mRNA_H-paniculata_contig3957.10277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI) HSP 1 Score: 273 bits (698), Expect = 1.320e-84 Identity = 136/214 (63.55%), Postives = 162/214 (75.70%), Query Frame = 3
Query: 237 AARSLSTALTTP----PASNIGGPSALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
A+RSLS TT PAS IG + IDDL N+DGYFEKDR+ KGDPGKREFTYFMLG RF+YASS RLILL+FL SW + +A A +E EL DI MG+++ WRGKP+ IKRR I E VL ++LRD ETD+ERCLKPEF++V+GICTHLGCVP DAG Y+G FCPCHGSHY+T+GRI GPAPLN+EIPPYKF+ K I++G
Sbjct: 39 ASRSLSAVTTTSSEVAPASYIGR-AGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMGTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMIVIGICTHLGCVPLPDAGDYNGSFCPCHGSHYETAGRIPKGPAPLNLEIPPYKFLTKTSILVG 251
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: A0A6V1WQS7_HETAK (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WQS7_HETAK) HSP 1 Score: 245 bits (625), Expect = 4.270e-74 Identity = 114/188 (60.64%), Postives = 146/188 (77.66%), Query Frame = 3
Query: 303 LIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
++DD++++D YFEKDRL KG+ KREFTYFMLG RF+YAS+ RL L++F+ S + + LA A E EL + MG T+++ WRGKPI I+RRT+++I T +V ELRD ETD ER K E++V+VGICTHLGCVP + AG+++GWFCPCHGSHYD SGRIR+GPAPLNMEIPPY FIE I+IG
Sbjct: 41 VVDDMSSQDHYFEKDRLAKGE-NKREFTYFMLGCSRFIYASAARLALIKFVSSMSASADVLALASVEVELGAVEMGKTITIKWRGKPIFIRRRTEQEIETSNAVSMSELRDPETDVERTRKQEWMVLVGICTHLGCVPLSGAGEFNGWFCPCHGSHYDLSGRIRIGPAPLNMEIPPYTFIEDEKILIG 227
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: A0A836CDL7_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDL7_9STRA) HSP 1 Score: 241 bits (614), Expect = 2.700e-72 Identity = 115/196 (58.67%), Postives = 150/196 (76.53%), Query Frame = 3
Query: 279 SNIGGPSALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
S +G P A D ++DG FEKDR+ G K EFTYF+LG GRFVYAS+ R+IL++F+ S + + LA A +E +LS +PMG +++ WRGKPI ++RRT+++I ER+V LRD ETD +R +KPE++V+VGICTHLGCVP ++AG+Y GWFCPCHGSHYD SGRIR GPAPLNMEIPPYKF+E+ I+IG
Sbjct: 48 SKLGNPLAEFD---SQDGAFEKDRVEPGTNHK-EFTYFLLGGGRFVYASTARVILIQFVASMSASADVLAMANAEVDLSPVPMGQGMTIKWRGKPIFVRRRTEDEIEAERNVPMHALRDEETDDDRTIKPEWLVLVGICTHLGCVPISNAGEYHGWFCPCHGSHYDLSGRIRKGPAPLNMEIPPYKFMEEEKIMIG 239
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: A0A2D4CB52_PYTIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CB52_PYTIN) HSP 1 Score: 239 bits (609), Expect = 7.980e-72 Identity = 110/198 (55.56%), Postives = 147/198 (74.24%), Query Frame = 3
Query: 273 PASNIGGPSALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
PA+ SA++DD ++ D YFEKDR+ GDP KR FTYFMLG R YA++ RL +++F+GS + + LA A +E +LS+I G+T+++ WRGKPI IK R++++IA V LRD ETD ER P+++VV+G+CTHLGCVP ++AG+Y GWFCPCHGSHYD SGRIR GPAPLN+EIPPY+FIE I++G
Sbjct: 23 PAAAFSTKSAVVDDFSSPDHYFEKDRIASGDPSKRAFTYFMLGGARVAYATAARLAVIKFVGSMSASADVLALATAEFDLSNIDEGATVTVKWRGKPIFIKHRSEKEIALSNDVNLSNLRDPETDAERVKDPKWLVVLGVCTHLGCVPTSNAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFIEDNKILLG 220
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: W2M1B7_PHYPR (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=10 Tax=Peronosporaceae TaxID=4777 RepID=W2M1B7_PHYPR) HSP 1 Score: 235 bits (600), Expect = 1.460e-70 Identity = 111/189 (58.73%), Postives = 138/189 (73.02%), Query Frame = 3
Query: 300 ALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
AL+D + D YFEKDR+ GDP KR FTYFMLG R YA++ RL +++F+GS + + LA A +E +LS I GST+++ WRGKPI IK RT ++I V LRD ETD R KPE++VV+G+CTHLGCVP +DAG+Y GWFCPCHGSHYD SGRIR GPAPLN+EIPPYKFIE I++G
Sbjct: 27 ALVDTYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEGSTVTVKWRGKPIFIKHRTAKEIDISNQVDVSNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDDKILLG 215
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: H3GII1_PHYRM (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3GII1_PHYRM) HSP 1 Score: 231 bits (590), Expect = 4.540e-69 Identity = 107/189 (56.61%), Postives = 140/189 (74.07%), Query Frame = 3
Query: 300 ALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
A+++ + D YFEKDR+ GDP KR FTYFMLG R YA++ RL +++F+GS + + LA A +E +LS+I GST+++ WRGKPI IK RT ++I V LRD ETD R KPE++VV+G+CTHLGCVP +DAG+Y GWFCPCHGSHYD SGRIR GPAPLN+EIPPY+F+E+ I++G
Sbjct: 28 AVVETYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEGSTVTVKWRGKPIFIKHRTAKEIDISNQVDVGNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYEFLEENKILLG 216
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: A0A5D6XVF7_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVF7_9STRA) HSP 1 Score: 231 bits (590), Expect = 4.690e-69 Identity = 105/189 (55.56%), Postives = 141/189 (74.60%), Query Frame = 3
Query: 300 ALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
A++DD ++ D YFEKDR+ GDP KR FTYF+LG R YA++ RL +++F+GS + + LA A +E +LS+I G+T+++ WRGKPI IK RT ++I +V LRD ETD R P+++VV+G+CTHLGCVP ++AG+Y GWFCPCHGSHYD SGRIR GPAPLN+EIPPYKF+E I++G
Sbjct: 29 AVVDDYSSPDHYFEKDRIAPGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEGATVTVKWRGKPIFIKHRTDKEIELSNAVNVSNLRDPETDAVRVQDPKWLVVLGVCTHLGCVPTSNAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFLENNKILLG 217
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: K3WIU0_GLOUD (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU0_GLOUD) HSP 1 Score: 229 bits (585), Expect = 2.570e-68 Identity = 103/189 (54.50%), Postives = 140/189 (74.07%), Query Frame = 3
Query: 300 ALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
A +D+ A+ D YFEKDR+ GDP KR FTYF+LG R YA++ RL +++F+GS + + LA A +E +LS+I G+T+++ WRGKPI IK RT ++I V L+D ETD R P++++V+G+CTHLGCVP ++AG+Y GWFCPCHGSHYD SGRIR GPAPLN+EIPPYKFIE+ +++G
Sbjct: 29 AAVDNFASPDHYFEKDRISAGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEGATVTVKWRGKPIFIKHRTDKEITISNEVNVANLKDPETDDVRVQNPKWLIVLGVCTHLGCVPTSNAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEENKVLLG 217
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: M4B2Y1_HYAAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2Y1_HYAAE) HSP 1 Score: 229 bits (585), Expect = 2.570e-68 Identity = 106/189 (56.08%), Postives = 138/189 (73.02%), Query Frame = 3
Query: 300 ALIDDLANKDGYFEKDRLPKGDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
A++D + D YFE DR+ GDP KR FTYFMLG R YA++ RL +++F+GS + + LA + +E +LS+I GST+++ WRGKPI IK RT ++I V LRD ETD R KPE++VV+G+CTHLGCVP ++AG+Y GWFCPCHGSHYD SGRIR GPAPLN+EIPPYKFIE +++G
Sbjct: 29 AVVDTYESPDRYFETDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALSTAEFDLSNISEGSTVTVKWRGKPIFIKHRTAKEIDISEQVDVSHLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSNAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDNKVLLG 217
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA) HSP 1 Score: 229 bits (585), Expect = 4.050e-68 Identity = 104/189 (55.03%), Postives = 139/189 (73.54%), Query Frame = 3
Query: 306 IDDLANKDGYFEKDRLPK--GDPGKREFTYFMLGMGRFVYASSFRLILLRFLGSWTLDKEALATAQSEAELSDIPMGSTLSMTWRGKPICIKRRTKEQIATERSVLPDELRDLETDQERCLKPEFVVVVGICTHLGCVPANDAGKYDGWFCPCHGSHYDTSGRIRLGPAPLNMEIPPYKFIEKYVIVIG 866
+D + + D Y+EKD+L K GDP KR+FTYF+LG RF+YAS+ RL+ L+F+ + + + LA A +E ++ DIP+G +++ WRGKPI I+ RT +I E +V +ELRD E D R +PE++++VGICTHLGCVP +AG Y GWFCPCHGSHYD SGRIR GPAPLNMEIPPYKF+ ++IG
Sbjct: 43 VDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3957.10277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3957.10277.1 >prot_H-paniculata_contig3957.10277.1 ID=prot_H-paniculata_contig3957.10277.1|Name=mRNA_H-paniculata_contig3957.10277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp MFRHAARRALVAPSAALRAAGAATATPSAPRAGVTAARSLSTALTTPPASback to top mRNA from alignment at H-paniculata_contig3957:849..9155- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3957.10277.1 ID=mRNA_H-paniculata_contig3957.10277.1|Name=mRNA_H-paniculata_contig3957.10277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8307bp|location=Sequence derived from alignment at H-paniculata_contig3957:849..9155- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3957:849..9155- >mRNA_H-paniculata_contig3957.10277.1 ID=mRNA_H-paniculata_contig3957.10277.1|Name=mRNA_H-paniculata_contig3957.10277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig3957:849..9155- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |