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Homology
BLAST of mRNA_H-paniculata_contig3956.10275.1 vs. uniprot
Match: D8LM74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM74_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 4.590e-10 Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1 RELALLEQSNAALFTALAQTRAAPVHPVSHGLDARMHSVGGRRMEMDSKAARRLRAEAAAIQERERQRIHDSRRLAEQNKDLRNAVS 261
RELALLEQSNAALF ALAQTRA P + LDARM SVG R +++ A RLR EAA IQE +L E+ +DL+ VS
Sbjct: 81 RELALLEQSNAALFAALAQTRAMPASRLPPALDARMRSVGARE---EARDAARLR-EAAEIQEXXXXXXXXXHQLVERTRDLKQTVS 163
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 540 |
| Cds size | 537 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3956.10275.1 >prot_H-paniculata_contig3956.10275.1 ID=prot_H-paniculata_contig3956.10275.1|Name=mRNA_H-paniculata_contig3956.10275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
RELALLEQSNAALFTALAQTRAAPVHPVSHGLDARMHSVGGRRMEMDSKA
ARRLRAEAAAIQERERQRIHDSRRLAEQNKDLRNAVSDLQRQKSEIDRQM
EEKRLRREQRKAEARRREEKKQREEAKALREQMTSAAVEATRLRARLKAR
TTQEQRARAREALWRWRASAAASVAARER back to topmRNA from alignment at H-paniculata_contig3956:11311..13295- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3956.10275.1 ID=mRNA_H-paniculata_contig3956.10275.1|Name=mRNA_H-paniculata_contig3956.10275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1985bp|location=Sequence derived from alignment at H-paniculata_contig3956:11311..13295- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGAGCTTGCTCTTCTGGAGCAGTCCAACGCCGCCTTGTTCACGGCGTT
GGCTCAGACTCGCGCAGCGCCCGTCCACCCGGTCTCACATGGTCTCGATG
GTGAGGGCTTGCCTCGCTGTCCCCGTACCTTGAGTAAATTTACCAGTAGT
TTGTAAGGTCAGGGGGACGGGGCGGGGGCAGGTGGCACGGGGGGTTACGT
CGTTGAAGCAGCTTTAAGTGATCATACGACGAACGAGTTGTTTTATACAC
CCTTGCCAGTAATAAACATACATTACACAACAGTGGGGGGGCGTGGTCTA
ATCAGATGAGGAAACGCAGAAAGTTACGGTCTACCGACTAAACCGTTTCA
AAATTGGCGTTTATGCCGAATATGCGAGGGCCAAGCTTATCTGAGCATAC
CGCGAGTACAGCTCGGGTGCAGTAGAGAGTGTCACGTGTAATACTCTCGA
GGTTGGATAGTAAATCAATGCTCTGCTGAAATGTGCGCTTCGAGCAGCAA
TTGCCATAAGTCCCAACTGCCGCGTGACACATGTCCCGATAGCCTGAACA
CGGTTCTATAAACATTATGAAACAAGTTTTTGTTCTCCGGCCTCTGCTTT
GACTCCGTGCAGCAAGGATGCATTCTGTGGGAGGTCGAAGGATGGAGATG
GACAGCAAAGCCGCACGGCGTCTTCGCGCTGAGGCGGCGGCAATACAGGA
GCGAGAGCGTCAGCGAATACATGACAGTCGGCGCCTTGCGGAACAGAATA
AGGACCTGAGGAATGCCGTGTCTGATCTCCAGAGACAGGCGAGTATAGGG
GCACCAGCTGAACCGAACGCGGTGTAGTAGTCTTCTGTCGTCCCAATTTT
TTGCCTCTCGAGTTGTACCGTGGTAGGATTTGGCCCGGTAAACGACGTGT
CTAATGGTGTACTTTGTTATGGCGCGTTTTTCGTGACGAAAAGTTAGCGT
AGCGGCAAAGACCGCTTCATGCCGTTACGGTACGTTTCGTGTTCGTGTTT
TTTACACGTCAGGTCACTCACGGAGGACCGCCTACTGCTGTTCGCGCCTT
GTGCTCGAGTCTTGTGATGAAATTGAAAAGAAAAGAAGTTCTTCCACCAC
GTTTCGCCTTTTCTTACATTGGTATACATCACCACAGCCGCGACAGCCAA
TCTCTTTCCCCCCTCTTGTGTGCAGGGTTTGCCGAGTTCGATGCCTCACC
AAATCCTCATGTGTTCGGGCGGGCGTTCAAAGTCCCTATTTGTGATTGTT
TTGTTTCGCGATCAAACAACAGAAGAGTGAGATAGACCGGCAGATGGAGG
AGAAGCGACTGCGCCGCGAGCAACGAAAGGCGGAGGCTAGGCGGCGGGAG
GAGAAAAAGCAAAGGGAAGAAGCAAAAGCTCTCCGAGAGCAAATGACCTC
TGCCGCTGTTGAAGCCACTCGCCTCCGCGCCAGGCTCAAAGCACGAACGA
CGCAAGAGCAGCGCGCACGCGCAAGGGAAGCGCTATGGCGGTGAGTTTTT
ATTATTGGGCTTTTTTGTGGGGCTCCGAATGCAGGCGTGGTCGTCTGTAA
TTTTGTCCGACCTGCTGTTTGTGCCGCCTCAGCTATTGAAAGTCATGCGC
CCGCCTCCGGGGAAGCACAATACCAGCTGGTGTTTTTTTGTGGTACATGT
AGCAGGATTAAAGTGAAGCAGTTGTGCGACAACGGACACCACCGTAGCGC
GTGTTCAGGTTTCGTGTTTCGTACTCTTGGTGTTCCCTGAATGCTTTCGA
CCCAGGTAGCTTTCGCAAAAATCAACGTATCTATTCCTGTCAAGTCAACT
GCAGCACTCGGGACCTATGCAACCTTTGCTTTGCCTTCTTCCATTTCACT
TTCTCTCTCCACCTGTTACTGGCTCCTCATTTTCATTTCCTTCGGGGGTC
ATCTCCAATGGCGGGAACTTATTTTTTCCCTTTCGCGCAGCTGGCGTGCA
AGCGCTGCGGCATCCGTAGCCGCCCGAGAACGCAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3956:11311..13295- >mRNA_H-paniculata_contig3956.10275.1 ID=mRNA_H-paniculata_contig3956.10275.1|Name=mRNA_H-paniculata_contig3956.10275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig3956:11311..13295- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGAGCTTGCTCTTCTGGAGCAGTCCAACGCCGCCTTGTTCACGGCGTT
GGCTCAGACTCGCGCAGCGCCCGTCCACCCGGTCTCACATGGTCTCGATG
CGCGAGCTTGCTCTTCTGGAGCAGTCCAACGCCGCCTTGTTCACGGCGTT
GGCTCAGACTCGCGCAGCGCCCGTCCACCCGGTCTCACATGGTCTCGATG
CAAGGATGCATTCTGTGGGAGGTCGAAGGATGGAGATGGACAGCAAAGCC
GCACGGCGTCTTCGCGCTGAGGCGGCGGCAATACAGGAGCGAGAGCGTCA
GCGAATACATGACAGTCGGCGCCTTGCGGAACAGAATAAGGACCTGAGGA
ATGCCGTGTCTGATCTCCAGAGACAGCAAGGATGCATTCTGTGGGAGGTC
GAAGGATGGAGATGGACAGCAAAGCCGCACGGCGTCTTCGCGCTGAGGCG
GCGGCAATACAGGAGCGAGAGCGTCAGCGAATACATGACAGTCGGCGCCT
TGCGGAACAGAATAAGGACCTGAGGAATGCCGTGTCTGATCTCCAGAGAC
AGAAGAGTGAGATAGACCGGCAGATGGAGGAGAAGCGACTGCGCCGCGAG
CAACGAAAGGCGGAGGCTAGGCGGCGGGAGGAGAAAAAGCAAAGGGAAGA
AGCAAAAGCTCTCCGAGAGCAAATGACCTCTGCCGCTGTTGAAGCCACTC
GCCTCCGCGCCAGGCTCAAAGCACGAACGACGCAAGAGCAGCGCGCACGC
GCAAGGGAAGCGCTATGGCGAAGAGTGAGATAGACCGGCAGATGGAGGAG
AAGCGACTGCGCCGCGAGCAACGAAAGGCGGAGGCTAGGCGGCGGGAGGA
GAAAAAGCAAAGGGAAGAAGCAAAAGCTCTCCGAGAGCAAATGACCTCTG
CCGCTGTTGAAGCCACTCGCCTCCGCGCCAGGCTCAAAGCACGAACGACG
CAAGAGCAGCGCGCACGCGCAAGGGAAGCGCTATGGCGCTGGCGTGCAAG
CGCTGCGGCATCCGTAGCCGCCCGAGAACGCCTGGCGTGCAAGCGCTGCG
GCATCCGTAGCCGCCCGAGAACGC back to top
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