mRNA_H-paniculata_contig3955.10272.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3955.10272.1
Unique NamemRNA_H-paniculata_contig3955.10272.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A6H5KNZ1_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNZ1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.440e-22
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TEEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSK--VAGTEAAGITQKIGAFSVRVE 171
            TEE  DSL PRPPVVSVMGHVDHGKTTLLDALRTSK  VAGTEAAGITQKIGAFSV V+
Sbjct:  435 TEETFDSLEPRPPVVSVMGHVDHGKTTLLDALRTSKAKVAGTEAAGITQKIGAFSVEVK 493
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A6N7F2P7_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F2P7_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    4 EEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRVE 171
            ++ A++L PRPPVV+VMGHVDHGKT+LLDALR + VAG EA GITQ IGA+ VR+E
Sbjct:  362 DDAAETLVPRPPVVTVMGHVDHGKTSLLDALRATNVAGGEAGGITQHIGAYQVRLE 417
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: UPI00131DA942 (translation initiation factor IF-2 n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI00131DA942)

HSP 1 Score: 83.6 bits (205), Expect = 2.480e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    4 EEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRVE 171
            E+ AD  APRPPVV++MGHVDHGKT+LLDALR++ VAG+E  GITQ IGA+ VR+E
Sbjct:  598 EDHADDTAPRPPVVTIMGHVDHGKTSLLDALRSADVAGSEHGGITQHIGAYQVRLE 653
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: G4ZWA2_PHYSP (Tr-type G domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZWA2_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 4.620e-17
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    7 EIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRV 168
            E   S   RPPVVSVMGHVDHGKTTLLDALR SKVA TEA GITQ+IGAFSV +
Sbjct:  368 EDCSSFPVRPPVVSVMGHVDHGKTTLLDALRKSKVAATEAGGITQRIGAFSVEL 421
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A0Q8MSZ2_9CAUL (Translation initiation factor IF-2 n=1 Tax=Phenylobacterium sp. Root700 TaxID=1736591 RepID=A0A0Q8MSZ2_9CAUL)

HSP 1 Score: 82.8 bits (203), Expect = 4.620e-17
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 EEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRVE 171
            E++ D L PRPPVV+VMGHVDHGKT+LLDALR++ VAG E  GITQ IGA+ VR+E
Sbjct:  536 EDVDDHLLPRPPVVAVMGHVDHGKTSLLDALRSADVAGGERGGITQHIGAYQVRLE 591
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A3R7KIT9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KIT9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.670e-17
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   31 RPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRV 168
            RPPVVSVMGHVDHGKTTLLDALR SKVA TEA GITQ+IGAFSV +
Sbjct:  372 RPPVVSVMGHVDHGKTTLLDALRKSKVAATEAGGITQRIGAFSVEL 417
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A7X9IJS1_9DELT (Translation initiation factor IF-2 n=1 Tax=SAR324 cluster bacterium TaxID=2024889 RepID=A0A7X9IJS1_9DELT)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 TEEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRVE 171
            TEE A +L PRPPVV+VMGHVDHGKTTLLD +R + VA  EA GITQ IGA+SV V+
Sbjct:  345 TEEDASNLQPRPPVVTVMGHVDHGKTTLLDYIRKTSVAAREAGGITQHIGAYSVNVK 401
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A2E5P9M5_9PROT (Translation initiation factor IF-2 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5P9M5_9PROT)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-16
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    4 EEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRVE 171
            E+ A SLAPRPPVV+VMGHVDHGKT+LLDA+RT+ VA  EA GITQ IGA+ V  E
Sbjct:  368 EDDAASLAPRPPVVTVMGHVDHGKTSLLDAMRTTDVAAGEAGGITQHIGAYQVETE 423
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: H3GK30_PHYRM (Tr-type G domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GK30_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   31 RPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRV 168
            RPP+VSVMGHVDHGKTTLLDALR SKVA TEA GITQ+IGAFSV +
Sbjct:  358 RPPIVSVMGHVDHGKTTLLDALRKSKVAATEAGGITQRIGAFSVEM 403
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BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Match: A0A849WTG9_9PROT (Translation initiation factor IF-2 n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=A0A849WTG9_9PROT)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 EEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIGAFSVRV 168
            E+ A+SL PRPP+V+VMGHVDHGKT+LLDA+R +KVA  EA GITQ IGA+SV V
Sbjct:  406 EDSAESLRPRPPIVTVMGHVDHGKTSLLDAIRNAKVAEGEAGGITQHIGAYSVMV 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3955.10272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNZ1_9PHAE2.440e-2288.14Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A6N7F2P7_9PROT1.810e-1769.64Translation initiation factor IF-2 n=1 Tax=Alphapr... [more]
UPI00131DA9422.480e-1769.64translation initiation factor IF-2 n=1 Tax=Cauloba... [more]
G4ZWA2_PHYSP4.620e-1777.78Tr-type G domain-containing protein n=6 Tax=Phytop... [more]
A0A0Q8MSZ2_9CAUL4.620e-1769.64Translation initiation factor IF-2 n=1 Tax=Phenylo... [more]
A0A3R7KIT9_9STRA8.670e-1786.96Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A7X9IJS1_9DELT1.180e-1670.18Translation initiation factor IF-2 n=1 Tax=SAR324 ... [more]
A0A2E5P9M5_9PROT1.180e-1671.43Translation initiation factor IF-2 n=1 Tax=Rhodosp... [more]
H3GK30_PHYRM1.180e-1684.78Tr-type G domain-containing protein n=1 Tax=Phytop... [more]
A0A849WTG9_9PROT1.180e-1670.91Translation initiation factor IF-2 n=1 Tax=Bdellov... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3955contigH-paniculata_contig3955:913..1092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog67593.Physo127908
Preferred nameMTIF2
KEGG koko:K02519
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032543,GO:0032790,GO:0032984,GO:0032988,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070124,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:2000112
EggNOG free text desc.Translation-initiation factor 2
EggNOG OGs3QA66@4776,COG0532@1,KOG1145@2759
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930211.5762308-CDS-H-paniculata_contig3955:912..10921622930211.5762308-CDS-H-paniculata_contig3955:912..1092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3955 913..1092 -
1691481192.8312812-CDS-H-paniculata_contig3955:912..10921691481192.8312812-CDS-H-paniculata_contig3955:912..1092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3955 913..1092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3955.10272.1prot_H-paniculata_contig3955.10272.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3955 913..1092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3955.10272.1

>prot_H-paniculata_contig3955.10272.1 ID=prot_H-paniculata_contig3955.10272.1|Name=mRNA_H-paniculata_contig3955.10272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
TEEIADSLAPRPPVVSVMGHVDHGKTTLLDALRTSKVAGTEAAGITQKIG
AFSVRVEIL*
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mRNA from alignment at H-paniculata_contig3955:913..1092-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3955.10272.1 ID=mRNA_H-paniculata_contig3955.10272.1|Name=mRNA_H-paniculata_contig3955.10272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig3955:913..1092- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGAAGAAATAGCGGATAGCCTGGCTCCGAGGCCACCGGTAGTGAGCGT
TATGGGTCACGTTGACCATGGCAAGACAACGCTCCTTGATGCCCTTCGGA
CCTCCAAGGTTGCCGGCACGGAGGCGGCGGGTATCACGCAGAAGATCGGC
GCGTTCTCGGTGAGGGTTGAGATTTTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3955:913..1092-

>mRNA_H-paniculata_contig3955.10272.1 ID=mRNA_H-paniculata_contig3955.10272.1|Name=mRNA_H-paniculata_contig3955.10272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig3955:913..1092- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGAAGAAATAGCGGATAGCCTGGCTCCGAGGCCACCGGTAGTGAGCGT
TATGGGTCACGTTGACCATGGCAAGACAACGCTCCTTGATGCCCTTCGGA
CCTCCAAGGTTGCCGGCACGGAGGCGGCGGGTATCACGCAGAAGATCGGC
GCGTTCTCGGTGAGGGTTGAGATTTTGTGAACGGAAGAAATAGCGGATAG
CCTGGCTCCGAGGCCACCGGTAGTGAGCGTTATGGGTCACGTTGACCATG
GCAAGACAACGCTCCTTGATGCCCTTCGGACCTCCAAGGTTGCCGGCACG
GAGGCGGCGGGTATCACGCAGAAGATCGGCGCGTTCTCGGTGAGGGTTGA
GATTTTGTGA
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