mRNA_H-paniculata_contig39455.10251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39455.10251.1
Unique NamemRNA_H-paniculata_contig39455.10251.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: D8LN35_ECTSI (FAD dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN35_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.360e-19
Identity = 57/117 (48.72%), Postives = 64/117 (54.70%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAAN-------------------SSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANAVE 1415
            RYWP VEE+KLVPDYSGIRPKL GP   +                         DE          P ++   G ADF+IQG   HGV GLVNL GIESPGLTASLAIA+HV   +E
Sbjct:   75 RYWPGVEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXDEEHRQYPPVPRPGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLE 191
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A839VMH1_9BURK (L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Herbaspirillum sp. Sphag64 TaxID=2587029 RepID=A0A839VMH1_9BURK)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-17
Identity = 48/93 (51.61%), Postives = 56/93 (60.22%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHV 1400
            +YWPA+ +  L P Y+GIRPKL+GP                              PADF+IQGPS HGV GLVNLFGIESPGLT+SLAIAE+V
Sbjct:   35 QYWPALPDGALQPGYAGIRPKLSGPGEP---------------------------PADFMIQGPSEHGVPGLVNLFGIESPGLTSSLAIAENV 100
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A530B3Y3_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530B3Y3_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 1.710e-17
Identity = 50/101 (49.50%), Postives = 56/101 (55.45%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANAVETTT 1424
            +YWP + +  L   YSGIRPKL+GP  ANS                           DF+IQ  + HGV GLVNLFGIESPGLTASLAIAEHV   V  TT
Sbjct:    2 KYWPDLPDGSLQAGYSGIRPKLSGPGDANS---------------------------DFVIQDAATHGVDGLVNLFGIESPGLTASLAIAEHVMGIVAPTT 75
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A2E4NM98_9PROT (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4NM98_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 3.110e-17
Identity = 48/98 (48.98%), Postives = 56/98 (57.14%), Query Frame = 3 
Query: 1125 YWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANAVET 1418
            YWP +E+  LVP Y GIRPK+ GP          +EA                  ADF++QGP AHG+ GLVNL GIESPGLTASLAIAE V   + T
Sbjct:    4 YWPGLEDGALVPGYCGIRPKITGP---------GEEA------------------ADFVVQGPRAHGIPGLVNLLGIESPGLTASLAIAERVREELNT 74
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A537XDJ1_9PROT (FAD-dependent oxidoreductase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537XDJ1_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 6.440e-17
Identity = 45/95 (47.37%), Postives = 55/95 (57.89%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVAN 1406
            RYWP + +  L+P YSGIRPK+  P  A                             DFLIQGP+ HGV+GL+NLFGIESPGLT+SLAIA+HV +
Sbjct:   41 RYWPTLPDGALMPSYSGIRPKIVPPAVATQ---------------------------DFLIQGPADHGVAGLINLFGIESPGLTSSLAIADHVGD 108
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A530AAW9_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530AAW9_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 6.640e-17
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVA 1403
            +YWP + +  L P YSGIRPKL+GP  A+S                           DF+IQ  +AHG+ GLVNLFGIESPGLT+SLA+AEHVA
Sbjct:    7 KYWPELADGSLQPAYSGIRPKLSGPGEASS---------------------------DFVIQDAAAHGIQGLVNLFGIESPGLTSSLAVAEHVA 73
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A528XT57_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A528XT57_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 7.440e-17
Identity = 47/93 (50.54%), Postives = 54/93 (58.06%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHV 1400
            +YWP + +  L P YSGIRPKL+GP  AN                            DF+IQ  +AHGV GLVNLFGIESPGLT+SLAIAEHV
Sbjct:   22 KYWPELADGSLQPAYSGIRPKLSGPGEAN---------------------------GDFVIQDATAHGVEGLVNLFGIESPGLTSSLAIAEHV 87
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: UPI001BCD6F75 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Pseudomonas lalucatii TaxID=1424203 RepID=UPI001BCD6F75)

HSP 1 Score: 93.2 bits (230), Expect = 8.580e-17
Identity = 51/94 (54.26%), Postives = 58/94 (61.70%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVA 1403
            RY+P ++ ++L P YSGIRPKLAGP                              PADFLIQGP AHG++GLVNLFGIESPGLTASLAIAE VA
Sbjct:  299 RYFPGLDSSRLTPGYSGIRPKLAGPGEP---------------------------PADFLIQGPGAHGLAGLVNLFGIESPGLTASLAIAERVA 365
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: A0A2N1WC83_9GAMM (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-9 TaxID=2013805 RepID=A0A2N1WC83_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-16
Identity = 48/98 (48.98%), Postives = 55/98 (56.12%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANAVE 1415
            RYWP + +  L P YSGIRPK++GP  A                            ADF I GP+ HGV+GLVNLFGIESPGLTA LAIAEHV   +E
Sbjct:   53 RYWPGLPDDALQPAYSGIRPKISGPGEA---------------------------AADFRIDGPAQHGVAGLVNLFGIESPGLTACLAIAEHVCGLLE 123
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BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Match: L2HDH_ACCSB (L-2-hydroxyglutarate dehydrogenase n=2 Tax=Candidatus Accumulibacter TaxID=327159 RepID=L2HDH_ACCSB)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-16
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query: 1122 RYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANAVETT 1421
            RYWPA+ +A L P Y+GIRPK+ GP A                             ADFLIQGP+ HG++GLVNLFGIESPGLTA LAIAE  A+A + T
Sbjct:  307 RYWPALPDAALTPAYAGIRPKIVGPGAP---------------------------AADFLIQGPAQHGIAGLVNLFGIESPGLTACLAIAERAADAADGT 379
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39455.10251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN35_ECTSI5.360e-1948.72FAD dependent oxidoreductase n=1 Tax=Ectocarpus si... [more]
A0A839VMH1_9BURK1.180e-1751.61L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Herbaspi... [more]
A0A530B3Y3_9HYPH1.710e-1749.50FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me... [more]
A0A2E4NM98_9PROT3.110e-1748.98FAD-dependent oxidoreductase (Fragment) n=1 Tax=Rh... [more]
A0A537XDJ1_9PROT6.440e-1747.37FAD-dependent oxidoreductase (Fragment) n=2 Tax=Al... [more]
A0A530AAW9_9HYPH6.640e-1748.94FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me... [more]
A0A528XT57_9HYPH7.440e-1750.54FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me... [more]
UPI001BCD6F758.580e-1754.26NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Pseudo... [more]
A0A2N1WC83_9GAMM1.030e-1648.98FAD-dependent oxidoreductase (Fragment) n=1 Tax=Ga... [more]
L2HDH_ACCSB1.430e-1650.00L-2-hydroxyglutarate dehydrogenase n=2 Tax=Candida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39455contigH-paniculata_contig39455:55..1896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.9e-19
Seed eggNOG ortholog2880.D8LN35
KEGG koko:K10742,ko:K14327,ko:K20298
KEGG Pathwayko03013,ko03015,ko03030,map03013,map03015,map03030
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2-hydroxyglutarate dehydrogenase activity
EggNOG OGsCOG0579@1,KOG2665@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03032,ko04131
Exons1
Model size1842
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39455.10251.1prot_H-paniculata_contig39455.10251.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39455 1161..1481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930209.1393664-UTR-H-paniculata_contig39455:54..11601622930209.1393664-UTR-H-paniculata_contig39455:54..1160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39455 55..1160 +
1691481191.7640636-UTR-H-paniculata_contig39455:54..11601691481191.7640636-UTR-H-paniculata_contig39455:54..1160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39455 55..1160 +
1622930209.177376-UTR-H-paniculata_contig39455:1481..18961622930209.177376-UTR-H-paniculata_contig39455:1481..1896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39455 1482..1896 +
1691481191.789669-UTR-H-paniculata_contig39455:1481..18961691481191.789669-UTR-H-paniculata_contig39455:1481..1896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39455 1482..1896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930209.1564512-CDS-H-paniculata_contig39455:1160..14811622930209.1564512-CDS-H-paniculata_contig39455:1160..1481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39455 1161..1481 +
1691481191.7808664-CDS-H-paniculata_contig39455:1160..14811691481191.7808664-CDS-H-paniculata_contig39455:1160..1481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39455 1161..1481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39455.10251.1

>prot_H-paniculata_contig39455.10251.1 ID=prot_H-paniculata_contig39455.10251.1|Name=mRNA_H-paniculata_contig39455.10251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MCCNDRYWPAVEEAKLVPDYSGIRPKLAGPQAANSSGGHSDEAQGDKRDG
ALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVAN
AVETTT*
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mRNA from alignment at H-paniculata_contig39455:55..1896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39455.10251.1 ID=mRNA_H-paniculata_contig39455.10251.1|Name=mRNA_H-paniculata_contig39455.10251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig39455:55..1896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAACATGTTTGGGCGAATGTCTGAATGTGGAAGCAGCGGAAAAGGTTT
TTGCCGCAGCCTTCCGAGGGTTAAAAAAAAGGAAAAAATCTTCCAGAGTT
ATGTCGATACCGGAAGACGGCCATGTTTGAACGAACAACACTCAGGGTAC
ACGTCGACGGTCAACCCCCCCTTTGCGATGCTCTACTCCGCATCATTATG
CACTCGAGGGAACATCCTGTCTGTGTGAAAATGGCATGCGAGTTATCGGT
CATTTACCCTCGCTGACGATTTGACGTGGGCGATAGATAGATATGACACA
ACGCATTGAACGCAGCCCTAGAAAATACGAGCTAATAAGAACACCCACCG
TTTTTTATCCTGATACCGTTAACTCGCATACAGAACTACTCCTCTTCAGT
AGCTCAGTGGGTCAGCGGGTCCGTGACTCAAATCCCCTCACCAGCTGCAG
ACAGGCCAATGGTGTACTTAACCCTTAGGAACCAAAATTCGTAAGGGTCG
GAATATAGATTTGCCAACGACCAGTGGTAAACACTGACGAAAATGTCGAC
GTATAGCCTCACCAGCTCTGGACAGATGGTTAGTACCGTGCATTTCAGGT
GCAAAAGGGGGTCCATTTTTTGCTGTTTCGAGACATCTATAATTTTGGAT
TAAGTGCAAAGGGAAAACAGGCAAACATCGGCTTTGTTCGTAACGACCAA
AAAACAACGCACTCCAAAACTGATTAATGGGAGCCAAAAATTCTTAGAGG
GTTAACATAGCCCCGCCCCCCCCTTTAGGCCTGGACACGCGAGGATTGGG
CCACATTTGACAATGTAGGACGGAGCGATTGGTCATCGGAAATCACTCTG
ATAGGAACAAAGTTCTGTCCTCCCTCGGACGCGTGGTCATCGGTCCAACA
ATAACAACTTCCAAATGCAAAACATGAGTACGCCGTCCCTCCCCCGCGCT
ACCACCATCACTACTATCGTTGTTACCATTGGCATCGTCATCACGTTAGC
CCATTGACTCACAGTGCTTCGTGAGCAGTAACGGACTCCAAAGGGACATA
TGTGACATGCGTGCCATGAGAACGACAAAGTGACAGCGACGCCTACGCCA
TGCGAAATGTGCTGTAACGACAGGTACTGGCCAGCTGTAGAGGAGGCCAA
GCTCGTGCCCGACTACAGCGGCATTCGGCCGAAGCTCGCTGGACCACAAG
CAGCCAATAGCAGCGGGGGACACTCAGACGAAGCCCAAGGCGACAAACGT
GACGGAGCATTGCCGAGTAGCACAAAAAAAAGTGGGCCCGCCGACTTCTT
AATACAAGGCCCTTCGGCCCACGGTGTGAGCGGGTTGGTGAACTTATTTG
GCATCGAGTCGCCTGGGCTGACAGCGTCGCTAGCGATCGCGGAACACGTT
GCGAATGCTGTCGAAACAACGACTTAGAATTGTATTCATATGCATATATC
TTGTCTTGAATGTCTCTGTGCTATTGTATTCATGTTCGGTCACTTCACCT
TTTGCATTGTGGGTGGTAATCAAAGTTGTTGTTTTTCGTGATGGACGAGC
TTGCGTGGGTGCGAATGGTATCGTTGCCATAGAGCGTGGTCTCAGCACGG
GTCTCTATATCTTATCGTAGTGCGGCGTCGATGGTACTCAAGCTGCTTGC
AGGGGCACGAGCTGGGCTAGGCAAGGCGGGTCGAAAACAGTGGACGGGTC
GAATATTATAGTCCGAACCAAATGCGTTCTGCAATGCGTAGTGTGGGTTC
CCTGCAACGTGGTTGCACCCTGGAATGCACCGCATGCTTATAATATCCAC
GGCCTGCCAGCGGCTACTAGGAGATAATTTGGTGTAAATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig39455:55..1896+

>mRNA_H-paniculata_contig39455.10251.1 ID=mRNA_H-paniculata_contig39455.10251.1|Name=mRNA_H-paniculata_contig39455.10251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig39455:55..1896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGTAACGACAGGTACTGGCCAGCTGTAGAGGAGGCCAAGCTCGT
GCCCGACTACAGCGGCATTCGGCCGAAGCTCGCTGGACCACAAGCAGCCA
ATAGCAGCGGGGGACACTCAGACGAAGCCCAAGGCGACAAACGTGACGGA
GCATTGCCGAGTAGCACAAAAAAAAGTGGGCCCGCCGACTTCTTAATACA
AGGCCCTTCGGCCCACGGTGTGAGCGGGTTGGTGAACTTATTTGGCATCG
AGTCGCCTGGGCTGACAGCGTCGCTAGCGATCGCGGAACACGTTGCGAAT
GCTGTCGAAACAACGACTTAGATGTGCTGTAACGACAGGTACTGGCCAGC
TGTAGAGGAGGCCAAGCTCGTGCCCGACTACAGCGGCATTCGGCCGAAGC
TCGCTGGACCACAAGCAGCCAATAGCAGCGGGGGACACTCAGACGAAGCC
CAAGGCGACAAACGTGACGGAGCATTGCCGAGTAGCACAAAAAAAAGTGG
GCCCGCCGACTTCTTAATACAAGGCCCTTCGGCCCACGGTGTGAGCGGGT
TGGTGAACTTATTTGGCATCGAGTCGCCTGGGCTGACAGCGTCGCTAGCG
ATCGCGGAACACGTTGCGAATGCTGTCGAAACAACGACTTAG
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