mRNA_H-paniculata_contig3943.10249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3943.10249.1
Unique NamemRNA_H-paniculata_contig3943.10249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 158 bits (400), Expect = 4.040e-41
Identity = 87/226 (38.50%), Postives = 133/226 (58.85%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LEL+HTDI GP+   S  + ++ + F+DD+SR   VY L+ KS+A    K+FK  + K +GLHI+ +RSD+G EFT + F+ F  ++GI+   +   +PQQNGVAER  R++ +M +S + + N+ + + AE V  A+Y LNR+P R   G+TP E   G      ++H              + R KLDDK    +F+GYD  S  Y++YNP+  ++ +SR   F
Sbjct:  175 LELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRK--PGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEF 398          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 158 bits (399), Expect = 5.750e-41
Identity = 94/226 (41.59%), Postives = 130/226 (57.52%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LE+VHTDIAGP D  S     + + F+DD+SR   +Y L+ KS+AL  LK+FK    K +G +++ LRSD+G E+T K F  F  E+GI H+ +A YTPQQNGVAER  R++ +M +S +    + R + AE VR A+Y LNR P +     TP E   G      + H                R+KLDD+    +F+GYDE S +YR+YNP  K + +SR   F
Sbjct:  390 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQK--PGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 613          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 157 bits (396), Expect = 1.520e-40
Identity = 93/226 (41.15%), Postives = 130/226 (57.52%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LE+VHTDIAGP D  S     + + F+DD+SR   +Y L+ KS+AL  L++FK    K +G +++ LRSD+G E+T K F  F  E+GI H+ +  YTPQQNGVAER  R++ +M +S +    + R + AE VR A+Y LNR P +     TP E   G      + H              Q R+KLDD+    +F+GYDE S +YR+YNP  K + +SR   F
Sbjct: 1311 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQK--PGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 1534          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A2K3L574_TRIPR (Copia-type reverse transcriptase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L574_TRIPR)

HSP 1 Score: 156 bits (395), Expect = 1.820e-40
Identity = 92/224 (41.07%), Postives = 134/224 (59.82%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHG---TA*HQSLTHS--------QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LEL+HTDI GP+  ESF  + + I F+DD+SR   VY L+ KS+A    K+FK  + KA   HI+ +RSD+G E+T  AF  +  E GI+   +A Y+PQQNGVAER  R+V +M +S + + NM +++ AE V+ A+Y  NR P      +TP E   G   T  H  +  S        Q+R KL+DK    +F+GYDE++  Y++++P +K V +SR  R 
Sbjct:  509 LELIHTDICGPITPESFSGKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATDRHIKAVRSDRGGEYTSTAFMKYCEEQGIRRFLTAPYSPQQNGVAERKNRTVLDMVRSMLKSKNMSKQFWAEAVQCAIYVQNRCPHAKLEDQTPQEVWSGQKPTVSHLKVFGSVAYAHLPDQRRTKLEDKSQKYIFIGYDEKTKGYKLFDPISKKVIVSRDVRI 732          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E)

HSP 1 Score: 155 bits (392), Expect = 4.730e-40
Identity = 87/224 (38.84%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE----KRHGTA*HQ---SLTHS----QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LEL+HTD+ GP+  +S  + ++ + F+DD+SR   VY L+ KS+     K+FK ++ K +GL I+ +RSD+G EFT K F  +  +NGI+ + +   +PQQNGVAER  R++ EM +S + +  + +   AE V  A+Y LNR+P +  SG+TP E    ++ G +  +   S+ H+    ++R KLDDK    +F+GYD  S  Y++YNP+ K   +SR   F
Sbjct:  526 LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVF 749          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA)

HSP 1 Score: 155 bits (392), Expect = 4.860e-40
Identity = 87/224 (38.84%), Postives = 133/224 (59.38%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*-------HQSLTH----SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LEL+HTD+ GP+   S  + ++ + F+DD+SR   VY L+ KS+     K+FK ++ K +GL I+ LRSD+G EFT K F+ +  +NGI+ + +   +PQQNGVAER  R++ EM +S + +  + + + AE V  A+Y  NR+P R  SG+TP E   G            S+ H     ++R KLDDK    +F+GYD  S  Y++YNP+++   +SR   F
Sbjct:  459 LELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVF 682          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 155 bits (392), Expect = 5.060e-40
Identity = 87/224 (38.84%), Postives = 133/224 (59.38%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*-------HQSLTH----SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LEL+HTD+ GP+   S  + ++ + F+DD+SR   VY L+ KS+     K+FK ++ K +GL I+ LRSD+G EFT K F+ +  +NGI+ + +   +PQQNGVAER  R++ EM +S + +  + + + AE V  A+Y  NR+P R  SG+TP E   G            S+ H     ++R KLDDK    +F+GYD  S  Y++YNP+++   +SR   F
Sbjct:  525 LELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVF 748          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H0W6_ARATH)

HSP 1 Score: 153 bits (387), Expect = 6.700e-40
Identity = 86/224 (38.39%), Postives = 136/224 (60.71%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE----KRHGTA*HQ---SLTHS----QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            +EL+HTD+ GP+  +S  + ++ + F+DD+SR   VY L+ KS+     K+FK ++ K +GL I+ +RSD G EFT K F  +  +NGI+ + +   +PQQNGVAER  R++ EM +S + +  + +   AE V  A+Y LNR+P +  SG+TP E    ++ G +  +   S+ H+    ++R KLDDK    +F+GYD  S  Y++YNP+ K   +SR   F
Sbjct:   24 VELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 247          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH)

HSP 1 Score: 154 bits (390), Expect = 9.310e-40
Identity = 87/224 (38.84%), Postives = 136/224 (60.71%), Query Frame = 1
Query:    1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE----KRHGTA*HQ---SLTHS----QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
            LEL+HTD+ GP+  +S  + ++ + F+DD+SR   VY L+ KS+     K+FK ++ K +GL I+ +RSD G EFT K F  +  +NGI+ + +   +PQQNGVAER  R++ EM +S + +  + +   AE V  A+Y LNR+P +  SG+TP E    ++ G +  +   S+ H+    ++R KLDDK    +F+GYD  S  Y++YNP+ K   +SR   F
Sbjct:  527 LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151TPH7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TPH7_CAJCA)

HSP 1 Score: 146 bits (369), Expect = 1.210e-38
Identity = 87/222 (39.19%), Postives = 125/222 (56.31%), Query Frame = 1
Query:    1 LELVHTDIAGPV-DESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSR 621
            LEL+HTDI GP+   S     + I F+DD+SRM  VY ++ KS+    LK+FK  + K +G  I+ LRSD+G+E+T   F  F  + GI+ + + +Y+PQQNGV+ER  R+V EM +S +    +   + AE V  A+Y LNR P R    +T  E   G     S  H              ++R KL+DKI  G+FLGY  +S  YR+YN + K + +SR
Sbjct:   97 LELIHTDICGPMRTSSLHNNRYFILFIDDFSRMTWVYFIKEKSEVFGILKKFKTLVEKQSGKQIKVLRSDRGKEYTSHEFDKFCEDEGIEQKLTVSYSPQQNGVSERKNRTVMEMARSMLKEKGLPNTFWAEVVYTAVYILNRCPTRTVQDKTLIEAWSGKK--PSTKHLRVFGSICYIHVLEEKRHKLEDKIVRGIFLGYSIQSKGYRVYNLQTKKLIISR 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0044644.040e-4138.50DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6A2WSU7_HIBSY5.750e-4141.59Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A2WXP0_HIBSY1.520e-4041.15Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A2K3L574_TRIPR1.820e-4041.07Copia-type reverse transcriptase-like protein (Fra... [more]
UPI000A29CC5E4.730e-4038.84uncharacterized protein LOC110224828 n=1 Tax=Arabi... [more]
A0A151TGQ2_CAJCA4.860e-4038.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RPT4_CAJCA5.060e-4038.84Retrovirus-related Pol polyprotein from transposon... [more]
V9H0W6_ARATH6.700e-4038.39Lectin receptor kinase (Fragment) n=1 Tax=Arabidop... [more]
Q9M197_ARATH9.310e-4038.84Copia-type reverse transcriptase-like protein n=6 ... [more]
A0A151TPH7_CAJCA1.210e-3839.19Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3943contigH-paniculata_contig3943:3428..4060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.5
Seed ortholog evalue6.2e-16
Seed eggNOG ortholog225117.XP_009356290.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37ITA@33090,3GHQJ@35493,4JTP0@91835,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size633
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3943.10249.1prot_H-paniculata_contig3943.10249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3943 3578..3967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930208.9065845-UTR-H-paniculata_contig3943:3427..35771622930208.9065845-UTR-H-paniculata_contig3943:3427..3577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3943 3428..3577 -
1691481191.682039-UTR-H-paniculata_contig3943:3427..35771691481191.682039-UTR-H-paniculata_contig3943:3427..3577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3943 3428..3577 -
1622930208.9506958-UTR-H-paniculata_contig3943:3967..40601622930208.9506958-UTR-H-paniculata_contig3943:3967..4060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3943 3968..4060 -
1691481191.7073333-UTR-H-paniculata_contig3943:3967..40601691481191.7073333-UTR-H-paniculata_contig3943:3967..4060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3943 3968..4060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930208.930905-CDS-H-paniculata_contig3943:3577..39671622930208.930905-CDS-H-paniculata_contig3943:3577..3967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3943 3578..3967 -
1691481191.6974459-CDS-H-paniculata_contig3943:3577..39671691481191.6974459-CDS-H-paniculata_contig3943:3577..3967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3943 3578..3967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3943.10249.1

>prot_H-paniculata_contig3943.10249.1 ID=prot_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRP
FRAENGIKHEFSAYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAET
VRMAMYCLNRAPMRPHSGRTPYEKRHGTA*
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mRNA from alignment at H-paniculata_contig3943:3428..4060-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3943.10249.1 ID=mRNA_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at H-paniculata_contig3943:3428..4060- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAGCTAGTGCATACCGACATCGCAGGACCGGTAGACGAATCTTTCGA GGAACGCCATTTCGCCATTTTCTTCGTGGACGACTACAGTCGAATGCGTA AGGTCTACGCACTGAGACACAAATCAGACGCGTTATGGGCTCTGAAACAG TTCAAGCAGAACATCGCGAAGGCAAATGGGCTACATATAGAACATCTTCG GTCAGATCAAGGAAGAGAGTTTACAGGAAAAGCGTTCCGACCATTTCGTG CGGAAAATGGCATAAAGCATGAATTTTCTGCCTACACACCGCAGCAAAAT GGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAGATGACCCAAAGTAA GATGATCACCGCCAACATGGGCCGCAGATATCGGGCGGAGACGGTGCGCA TGGCTATGTACTGCTTAAATCGCGCCCCGATGCGACCGCACAGCGGAAGA ACGCCGTATGAGAAACGGCACGGCACGGCATGACACCAAAGCTTGACCCA CTCACAGCAAAGACGCAAACTCGATGACAAAATATGGGTGGGGGTGTTTC TGGGGTACGATGAAGAAAGTCCGAGTTATCGCATATATAACCCGGAAAAT AAGAGCGTCCAGTTGAGCAGGAAAGCAAGATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig3943:3428..4060-

>mRNA_H-paniculata_contig3943.10249.1 ID=mRNA_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig3943:3428..4060- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAAGGTCTACGCACTGAGACACAAATCAGACGCGTTATGGGCTCT
GAAACAGTTCAAGCAGAACATCGCGAAGGCAAATGGGCTACATATAGAAC
ATCTTCGGTCAGATCAAGGAAGAGAGTTTACAGGAAAAGCGTTCCGACCA
TTTCGTGCGGAAAATGGCATAAAGCATGAATTTTCTGCCTACACACCGCA
GCAAAATGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAGATGACCC
AAAGTAAGATGATCACCGCCAACATGGGCCGCAGATATCGGGCGGAGACG
GTGCGCATGGCTATGTACTGCTTAAATCGCGCCCCGATGCGACCGCACAG
CGGAAGAACGCCGTATGAGAAACGGCACGGCACGGCATGAATGCGTAAGG
TCTACGCACTGAGACACAAATCAGACGCGTTATGGGCTCTGAAACAGTTC
AAGCAGAACATCGCGAAGGCAAATGGGCTACATATAGAACATCTTCGGTC
AGATCAAGGAAGAGAGTTTACAGGAAAAGCGTTCCGACCATTTCGTGCGG
AAAATGGCATAAAGCATGAATTTTCTGCCTACACACCGCAGCAAAATGGT
GTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAGATGACCCAAAGTAAGAT
GATCACCGCCAACATGGGCCGCAGATATCGGGCGGAGACGGTGCGCATGG
CTATGTACTGCTTAAATCGCGCCCCGATGCGACCGCACAGCGGAAGAACG
CCGTATGAGAAACGGCACGGCACGGCATGA
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