prot_H-paniculata_contig3943.10249.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3943.10249.1
Unique Nameprot_H-paniculata_contig3943.10249.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length130
Homology
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 98.2 bits (243), Expect = 3.040e-21
Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHG 127
            VY L +KSDA    K FK  + K  GL I+ LR+D+G EFT   F+ +   NGIK + + AYTPQQNGVAER  R+V  M +S ++  N+ R++  E V  A Y LNR P       TP E  +G
Sbjct:  527 VYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYG 651          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A1R3L622_ASPOF (Integrase catalytic domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L622_ASPOF)

HSP 1 Score: 93.6 bits (231), Expect = 3.770e-21
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE 123
            +Y L+ KS AL   K+FK+ + K +G HI+  RS++G E+T KAF  F  +  I H+ + AYTPQQNG+AER  R++  M +S + +  + + Y  E V  A+Y LNR P +    +TP E
Sbjct:   57 IYFLKEKSKALEKFKEFKEMVEKQSGYHIKMFRSNRGGEYTSKAFNNFNKQYRIIHQLTVAYTPQQNGIAERKNRTILNMVRSMLKSKYLPKTYWTEAVDCAVYLLNRCPTKSVKFKTPLE 177          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A4C1SFC4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SFC4_EUMVA)

HSP 1 Score: 97.4 bits (241), Expect = 5.210e-21
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHG 127
            +Y ++ K+      K +KQ + +  G  I+ LRSD GRE+  KAF  +  E+GI  + + AYTPQQNG+AER+ R++ EM+++ +I AN+G+   AE V  A+Y  NR+P +   G+TP+E  +G
Sbjct:  290 IYFMKSKNQVFGKFKIYKQQVERQMGRKIKMLRSDNGREYNNKAFDLYLQEHGIVRQLTVAYTPQQNGIAERANRTLVEMSRAMLIHANLGKHLWAEAVSTAVYLRNRSPTKALLGKTPFEVWYG 414          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A6D2I006_9BRAS (Integrase catalytic domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I006_9BRAS)

HSP 1 Score: 96.7 bits (239), Expect = 9.950e-21
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 0
Query:    5 YALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEK 124
            + L  KS+AL   K+FK  + + +G  +  LR+D+G E+  KAF  F  ENGIK + +A YTPQQNGVAER  RSV  MT+  ++  ++ RR+ AE V+ A++ LNR+P       TP EK
Sbjct:   62 FLLTEKSEALQVFKEFKAGVERESGQPLVCLRTDRGGEYCSKAFEEFCRENGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILNRSPSAALGDITPEEK 182          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 95.9 bits (237), Expect = 1.890e-20
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE 123
            VY L +KSDA    K FK  + K   L I+ LR+D+G EFT   F+ +   NGIK + +A YTPQQNGVAER  R+V  M +S ++  N+ R++ AE V  A Y LNR P       TP E
Sbjct:  223 VYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVE 343          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151SRN1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRN1_CAJCA)

HSP 1 Score: 90.5 bits (223), Expect = 6.630e-20
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE 123
            VY L  KS+AL+  K FK  + K +GL ++  R+D+G EFT   F  F   NGIK + + AYTPQQNGVAER  R++  + +S +   N+ + +  E V+  +Y LNR+P     G TP E
Sbjct:   89 VYFLLEKSEALYHFKCFKTLVEKESGLPVKVFRTDRGGEFTSSEFNEFCELNGIKRKLTTAYTPQQNGVAERKNRTIMNLVRSMLSEKNIPKTFWPEAVKWTVYVLNRSPTLAVKGMTPEE 209          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A1J3IBS4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IBS4_NOCCA)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-19
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE 123
            VY L  K +A    K+FK  + K +   ++ LR+D+G EFT   F  F    GI HE + AYTP+QNGVAER  R+V EM +S +   N+  ++ AE+VR A+Y LN +P +    RTPYE
Sbjct:  112 VYFLETKGEAFTMFKKFKSLVEKQSEQQLKVLRTDRGGEFTSTEFNKFCESEGIHHELTTAYTPEQNGVAERKNRTVVEMARSMLKQKNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYE 232          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: W8AQ86_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQ86_CERCA)

HSP 1 Score: 92.4 bits (228), Expect = 3.140e-19
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHG 127
            VY ++ KS+AL   K F  +  K  G  I+ +RSD GREF    F  + +E GI+H+ + AY+PQQNGVAER+ R++ EM +  +  + + +   AE V  A+Y  NR P       TPYEK HG
Sbjct:  513 VYFIKRKSEALNMFKLFTASAEKQTGRKIKSVRSDNGREFVNSEFEKYLSERGIRHQTTVAYSPQQNGVAERANRTIVEMARCMINESKLPQTMWAEAVSTAVYIRNRCPTNVLGQATPYEKWHG 637          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: B6REL8_9BRAS (Integrase n=1 Tax=Boechera divaricarpa TaxID=115915 RepID=B6REL8_9BRAS)

HSP 1 Score: 91.7 bits (226), Expect = 5.790e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE 123
            VY L+ K +A    K FK  + K +   ++ LR+D+G EFT   F  F  + GI HE + AYTP+QNGVAER   +V EM +S +   N+  ++ AE+VR A+Y LN +P +    RTPYE
Sbjct:  374 VYFLKSKGEAFDMFKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGIHHELTTAYTPEQNGVAERKNTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYE 494          
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: UPI0010AB2078 (uncharacterized protein LOC114827357 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AB2078)

HSP 1 Score: 90.9 bits (224), Expect = 1.030e-18
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    4 VYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE 123
            VY +R+KS+     K+FK  +   +GL I+ LRSD+G EFT   F+ F    G++ + + AYTPQQNGVAER  R+V EMT+S +    M   +  E V  ++Y LNR P +    +TP+E
Sbjct:  452 VYLMRNKSEVFSIFKKFKMMVELQSGLKIKRLRSDRGGEFTSLEFQEFCEGAGLQKQLTVAYTPQQNGVAERKNRTVVEMTKSMLHDKKMPLSFWGEAVNTSVYLLNRCPTKALEKKTPFE 572          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6P4L8_TRISU3.040e-2144.80Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A1R3L622_ASPOF3.770e-2141.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A4C1SFC4_EUMVA5.210e-2140.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2I006_9BRAS9.950e-2144.63Integrase catalytic domain-containing protein n=2 ... [more]
A0A2K3KY79_TRIPR1.890e-2045.45Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A151SRN1_CAJCA6.630e-2042.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3IBS4_NOCCA1.200e-1943.80Retrovirus-related Pol polyprotein from transposon... [more]
W8AQ86_CERCA3.140e-1941.60Retrovirus-related Pol polyprotein from transposon... [more]
B6REL8_9BRAS5.790e-1942.98Integrase n=1 Tax=Boechera divaricarpa TaxID=11591... [more]
UPI0010AB20781.030e-1842.15uncharacterized protein LOC114827357 n=1 Tax=Malus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..129
e-value: 9.8E-19
score: 69.3
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 5..79
e-value: 8.2E-13
score: 48.6
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..129
score: 15.276
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 34..112
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 34..112
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3943contigH-paniculata_contig3943:3578..3967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3943.10249.1mRNA_H-paniculata_contig3943.10249.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3943 3428..4060 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3943.10249.1 ID=prot_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRP
FRAENGIKHEFSAYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAET
VRMAMYCLNRAPMRPHSGRTPYEKRHGTA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf