mRNA_H-paniculata_contig3943.10249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 158 bits (400), Expect = 4.040e-41 Identity = 87/226 (38.50%), Postives = 133/226 (58.85%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LEL+HTDI GP+ S + ++ + F+DD+SR VY L+ KS+A K+FK + K +GLHI+ +RSD+G EFT + F+ F ++GI+ + +PQQNGVAER R++ +M +S + + N+ + + AE V A+Y LNR+P R G+TP E G ++H + R KLDDK +F+GYD S Y++YNP+ ++ +SR F
Sbjct: 175 LELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRK--PGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEF 398
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 158 bits (399), Expect = 5.750e-41 Identity = 94/226 (41.59%), Postives = 130/226 (57.52%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LE+VHTDIAGP D S + + F+DD+SR +Y L+ KS+AL LK+FK K +G +++ LRSD+G E+T K F F E+GI H+ +A YTPQQNGVAER R++ +M +S + + R + AE VR A+Y LNR P + TP E G + H R+KLDD+ +F+GYDE S +YR+YNP K + +SR F
Sbjct: 390 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQK--PGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 613
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 157 bits (396), Expect = 1.520e-40 Identity = 93/226 (41.15%), Postives = 130/226 (57.52%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LE+VHTDIAGP D S + + F+DD+SR +Y L+ KS+AL L++FK K +G +++ LRSD+G E+T K F F E+GI H+ + YTPQQNGVAER R++ +M +S + + R + AE VR A+Y LNR P + TP E G + H Q R+KLDD+ +F+GYDE S +YR+YNP K + +SR F
Sbjct: 1311 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQK--PGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 1534
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A2K3L574_TRIPR (Copia-type reverse transcriptase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L574_TRIPR) HSP 1 Score: 156 bits (395), Expect = 1.820e-40 Identity = 92/224 (41.07%), Postives = 134/224 (59.82%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHG---TA*HQSLTHS--------QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LEL+HTDI GP+ ESF + + I F+DD+SR VY L+ KS+A K+FK + KA HI+ +RSD+G E+T AF + E GI+ +A Y+PQQNGVAER R+V +M +S + + NM +++ AE V+ A+Y NR P +TP E G T H + S Q+R KL+DK +F+GYDE++ Y++++P +K V +SR R
Sbjct: 509 LELIHTDICGPITPESFSGKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATDRHIKAVRSDRGGEYTSTAFMKYCEEQGIRRFLTAPYSPQQNGVAERKNRTVLDMVRSMLKSKNMSKQFWAEAVQCAIYVQNRCPHAKLEDQTPQEVWSGQKPTVSHLKVFGSVAYAHLPDQRRTKLEDKSQKYIFIGYDEKTKGYKLFDPISKKVIVSRDVRI 732
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E) HSP 1 Score: 155 bits (392), Expect = 4.730e-40 Identity = 87/224 (38.84%), Postives = 137/224 (61.16%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE----KRHGTA*HQ---SLTHS----QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LEL+HTD+ GP+ +S + ++ + F+DD+SR VY L+ KS+ K+FK ++ K +GL I+ +RSD+G EFT K F + +NGI+ + + +PQQNGVAER R++ EM +S + + + + AE V A+Y LNR+P + SG+TP E ++ G + + S+ H+ ++R KLDDK +F+GYD S Y++YNP+ K +SR F
Sbjct: 526 LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVF 749
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA) HSP 1 Score: 155 bits (392), Expect = 4.860e-40 Identity = 87/224 (38.84%), Postives = 133/224 (59.38%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*-------HQSLTH----SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LEL+HTD+ GP+ S + ++ + F+DD+SR VY L+ KS+ K+FK ++ K +GL I+ LRSD+G EFT K F+ + +NGI+ + + +PQQNGVAER R++ EM +S + + + + + AE V A+Y NR+P R SG+TP E G S+ H ++R KLDDK +F+GYD S Y++YNP+++ +SR F
Sbjct: 459 LELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVF 682
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA) HSP 1 Score: 155 bits (392), Expect = 5.060e-40 Identity = 87/224 (38.84%), Postives = 133/224 (59.38%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*-------HQSLTH----SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LEL+HTD+ GP+ S + ++ + F+DD+SR VY L+ KS+ K+FK ++ K +GL I+ LRSD+G EFT K F+ + +NGI+ + + +PQQNGVAER R++ EM +S + + + + + AE V A+Y NR+P R SG+TP E G S+ H ++R KLDDK +F+GYD S Y++YNP+++ +SR F
Sbjct: 525 LELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVF 748
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H0W6_ARATH) HSP 1 Score: 153 bits (387), Expect = 6.700e-40 Identity = 86/224 (38.39%), Postives = 136/224 (60.71%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE----KRHGTA*HQ---SLTHS----QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
+EL+HTD+ GP+ +S + ++ + F+DD+SR VY L+ KS+ K+FK ++ K +GL I+ +RSD G EFT K F + +NGI+ + + +PQQNGVAER R++ EM +S + + + + AE V A+Y LNR+P + SG+TP E ++ G + + S+ H+ ++R KLDDK +F+GYD S Y++YNP+ K +SR F
Sbjct: 24 VELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 247
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH) HSP 1 Score: 154 bits (390), Expect = 9.310e-40 Identity = 87/224 (38.84%), Postives = 136/224 (60.71%), Query Frame = 1
Query: 1 LELVHTDIAGPVD-ESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFSA-YTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYE----KRHGTA*HQ---SLTHS----QQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSRKARF 633
LEL+HTD+ GP+ +S + ++ + F+DD+SR VY L+ KS+ K+FK ++ K +GL I+ +RSD G EFT K F + +NGI+ + + +PQQNGVAER R++ EM +S + + + + AE V A+Y LNR+P + SG+TP E ++ G + + S+ H+ ++R KLDDK +F+GYD S Y++YNP+ K +SR F
Sbjct: 527 LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Match: A0A151TPH7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TPH7_CAJCA) HSP 1 Score: 146 bits (369), Expect = 1.210e-38 Identity = 87/222 (39.19%), Postives = 125/222 (56.31%), Query Frame = 1
Query: 1 LELVHTDIAGPV-DESFEERHFAIFFVDDYSRMRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPFRAENGIKHEFS-AYTPQQNGVAERSWRSVFEMTQSKMITANMGRRYRAETVRMAMYCLNRAPMRPHSGRTPYEKRHGTA*HQSLTH-------------SQQRRKLDDKIWVGVFLGYDEESPSYRIYNPENKSVQLSR 621
LEL+HTDI GP+ S + I F+DD+SRM VY ++ KS+ LK+FK + K +G I+ LRSD+G+E+T F F + GI+ + + +Y+PQQNGV+ER R+V EM +S + + + AE V A+Y LNR P R +T E G S H ++R KL+DKI G+FLGY +S YR+YN + K + +SR
Sbjct: 97 LELIHTDICGPMRTSSLHNNRYFILFIDDFSRMTWVYFIKEKSEVFGILKKFKTLVEKQSGKQIKVLRSDRGKEYTSHEFDKFCEDEGIEQKLTVSYSPQQNGVSERKNRTVMEMARSMLKEKGLPNTFWAEVVYTAVYILNRCPTRTVQDKTLIEAWSGKK--PSTKHLRVFGSICYIHVLEEKRHKLEDKIVRGIFLGYSIQSKGYRVYNLQTKKLIISR 316 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3943.10249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3943.10249.1 >prot_H-paniculata_contig3943.10249.1 ID=prot_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp MRKVYALRHKSDALWALKQFKQNIAKANGLHIEHLRSDQGREFTGKAFRPback to top mRNA from alignment at H-paniculata_contig3943:3428..4060- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3943.10249.1 ID=mRNA_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at H-paniculata_contig3943:3428..4060- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3943:3428..4060- >mRNA_H-paniculata_contig3943.10249.1 ID=mRNA_H-paniculata_contig3943.10249.1|Name=mRNA_H-paniculata_contig3943.10249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig3943:3428..4060- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |