mRNA_H-paniculata_contig3940.10244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3940.10244.1
Unique NamemRNA_H-paniculata_contig3940.10244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3940.10244.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.340e-13
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 RYTSYQGLPTDMRPQAGDVLAFKILSLNEETWTPELSAYREAEVAFFDPDTDCVRFLP 174
            RY  Y+ LPTDMRPQ  DVLAFK LSLNEETWTPELS YR AEV  FD  +  VR LP
Sbjct:  175 RYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLP 232
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BLAST of mRNA_H-paniculata_contig3940.10244.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.600e-12
Identity = 40/58 (68.97%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 RYTSYQGLPTDMRPQAGDVLAFKILSLNEETWTPELSAYREAEVAFFDPDTDCVRFLP 174
            RY  Y+ LPTDMRPQ  DVLAFK LSLNEETWTPELS YR AEV  FD  +  VR  P
Sbjct:  636 RYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRP 693
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3940.10244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI2.340e-1370.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE1.600e-1268.97Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3940contigH-paniculata_contig3940:2838..6808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1575
Cds size1431
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3940.10244.1prot_H-paniculata_contig3940.10244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3940 2871..6697 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930208.1123843-UTR-H-paniculata_contig3940:2837..28701622930208.1123843-UTR-H-paniculata_contig3940:2837..2870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3940 2838..2870 +
1691481191.234514-UTR-H-paniculata_contig3940:2837..28701691481191.234514-UTR-H-paniculata_contig3940:2837..2870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3940 2838..2870 +
1622930208.1540828-UTR-H-paniculata_contig3940:6697..68081622930208.1540828-UTR-H-paniculata_contig3940:6697..6808Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3940 6698..6808 +
1691481191.2747965-UTR-H-paniculata_contig3940:6697..68081691481191.2747965-UTR-H-paniculata_contig3940:6697..6808Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3940 6698..6808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930208.126007-CDS-H-paniculata_contig3940:2870..29661622930208.126007-CDS-H-paniculata_contig3940:2870..2966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3940 2871..2966 +
1691481191.2510014-CDS-H-paniculata_contig3940:2870..29661691481191.2510014-CDS-H-paniculata_contig3940:2870..2966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3940 2871..2966 +
1622930208.137776-CDS-H-paniculata_contig3940:5362..66971622930208.137776-CDS-H-paniculata_contig3940:5362..6697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3940 5363..6697 +
1691481191.2677-CDS-H-paniculata_contig3940:5362..66971691481191.2677-CDS-H-paniculata_contig3940:5362..6697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3940 5363..6697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3940.10244.1

>prot_H-paniculata_contig3940.10244.1 ID=prot_H-paniculata_contig3940.10244.1|Name=mRNA_H-paniculata_contig3940.10244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=477bp
MRPQAGDVLAFKILSLNEETWTPELSAYREAEVAFFDPDTDCVRFLPPGE
RSASGSSTTSAVGAATTNGVSTISTGNKHANKTTVETYAKQNNDPQPGSP
VHDTANGSGGGGGGLEIDGGKQKKDNVRSSPASSSSPLPPPLPEIGIHTG
GAMAGGESSTRTPSPQHSQNSKEVQEQGGGGRVGGTDDFTGSGRNGVDGG
GNNKGSNDVSCSAGATIPDDGICRMNKGGQKATDVGRSQGGLGQGEEEGR
REGEAAEGKVRIQENQEEKKDEGEGMEDDIIEWSTLTAIRVLSGPSIAEL
EKRRQAMEKWSSLLVPETAVAVAAAGSGSPSTSVGPAGEPVINSDASLAA
GAGGGSGGDGSSGTVKDDGRTTAASTPFTQLPSSHKQQKQPPSEAGGSVE
STVQGRGNGGRASAGGGGSSKRSGKKKKRGGAAVGVARFMAALTNTSITP
PLPGNGSSAATAAAVSASVAAPSSVS*
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mRNA from alignment at H-paniculata_contig3940:2838..6808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3940.10244.1 ID=mRNA_H-paniculata_contig3940.10244.1|Name=mRNA_H-paniculata_contig3940.10244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3971bp|location=Sequence derived from alignment at H-paniculata_contig3940:2838..6808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACACGAGTTATCAGGGGCTGCCGACGGACATGCGCCCTCAGGCGGG
CGACGTGCTCGCGTTCAAGATCCTGTCGCTCAACGAGGAAACTTGGACTC
CCGAACTTTCCGCGTACCGAGAAGCTGAGGTACGAATAAAATGCGGTTTA
TTGGTCATTATCCGTTGTTTGAATATTTAGATCTAAATATATATATGTAC
AGCACTTCTTCTGTGCCATTAATGAGTCACTTGAGTTCACATAGGGTGCT
AGCGGTCTCGTCTATATATGTACATAGATGGGTTCTTTTTTTGAAATCCG
GCATGTTTTTTGTGGGGGTTGGAACCCGAATTTTTGCAGAAATTGTAAAG
CCCACGGGAGATGTGCTCGCGGCGCAAGAGCACCCTGCCCCCAAAAGGCC
ATAGTTTTCCACATGTTCCGCAATCTTTTGTGGGCCGCGGCACCCTCACC
CTGAGCCTGTCACAAAATGGCCAAAGAATGGTCGACTCTTTGGGGTCGAG
TGTAATTCCACCTGTATTTTTAGGAATTAATCAGATCTCAAAATATTAGA
TTTAAAACCCACGTTTTTGTGGCTTTGAAACGATGTATCGCACGCCAAGT
TCCGCTATGTGGTAGATTCGAAAGCATGAACCGGTCAAGATGAGCGAGTT
TAATTATGGCACAGAGGAACTACAAACTTAGTTCGTATGTATTATATGCT
AGGGCTTCTGCGGCAAAGATCCGGCATGAATGGCGCGAAAGGGGTTAGGG
ACAGCCATTGGTTCATGTAAATAACCCTGAATCAGGATTTCTCAAAATCG
CTTGTCATCAAAAAAAAGAAGAAGAAAAGATTCCACCCCGGTATGCAATG
AACGAACGTGGACAGTTTGCGCTCTTTTCCTTTCGCTTGGCGTCAATCAA
GCACAGTCGGGAGAGAGGCTAAAAATGGTCGTGGATTCAAATAGTTCTGA
ATAAATGCAGTTGACTGAGTACACTAAAATGAAGTGATTGTCTAGTTGGA
GTAAATAGTTGTCCGGGGCGTACACAAGTGGCCAGAGAGGAGTGAGCACC
TTTGCATGATGGCACTGGGGAGGGGGGGGATGATAAAAAAAAAAAAAGAG
GCACAATTTTCCACGTTGTGGCCCGCCCGTTTGGGTTCAACATTTGTACA
GGCACTTTTTTGTGAGGTTCCTATTTGTTATAACGGCATGATCAACGCCA
CATGTGTAACGCGTCAACGAAATGTTTTACATCGAGATTGTATGGGGTTT
ACGTGAAGAGCCGCGCTGGCGCCGACGCCCAAAGGGTCAGAGGCACATAC
CCGTAAGACCCTTTGGTTGTGCTCTCCTCTGGAATTGTGCGTCATATCCG
CTCTTGTCCTGACGAACGACATTGCTACTGCCGAAAAGTGCATCTATTGA
CAAATTTCGACTAGATCTTCCCAATCGCGCAACTTTGGCATCGCACTAGT
ACTGTAGTTTTTGAGAGAATCTGGCCTGAAAAAGCGCCTCGAGGGAGGGA
CGTAGTCAAAGGGGTTTTACAGGTACCTTAAGGTGTGCAGAGCAAAAGGC
ACAATGCCTCCAAGTTGTTGGCAAGTTGTTCGTTTCACGGCGGGCTTACT
TGGTACAGTGGCCGTCGTGTTGAGCCACCGTACAGTCATTCAGTTGCACC
TTCAGCCGAACAACTTATGTGTCTGGTTTGGCTGGTGCACTGGTATAGTA
CGTTATAGACACACTACAGACACACCTACCGCCCAATGATCAGAAGAACG
CGAGTGCTAGCCGGCGTCGTCTAGCTCGTGGAGAATCGAAAATTGCCTTG
GTGTTTGAAAAACGTTTTGGCTGCTCATTTTTTGTTAGGTCATGCAGCTA
CGCTGACGAGCTCACTCGGAGATTAATACGTGTGTCGAGGGTGTTCCCGT
CAACGACGACTGGCTGGCTATTACTAATGTCCTAATCACAAAAGAAAACG
CTTCAGGGGCGGGAGGGGGCAAGTCTGTGTTGACCGTCAACACGAATATA
CTCGGGATTAGTCCATTCTCCCTTATTCATGTCTGTCGTGCATTCAGCAG
TTCAAGAAAACATTTTTTCCCTTCCCTTTTTTTTTTTTGCCAAAAATGGA
AGTATTCGTCATATTGCATATGTATTATGTATTATATATCCCAAACTTTG
CCCCCCCCCCCCCCCCCCGTACGAAGACGAGCATATATTCGCGACGAAGC
TTGAAGGTATTCACCTGAAGGTTCAGGATGTGCGGGCACACGGAAGAGAC
CATTTGCCCCCTATTTTGTCCGTTTTACTAGTGTTTTTAGTTGGAGCAGT
GAGTACTAGATGGTCCGGGGTGCATACAATTAAACGTGTTTATGCTGAAC
CTTGAGGCGAATACTTTTATCTGTGTTTGGAACTTTCGTCAGGAATCCCC
CAAGTATTCGTCCTTGTCCAGGGAGGGTGCGAACTTCCAACCAGTTGAAT
TTAGGAGACTACGCTACTAGAAAATTTTAACCTTGCCTTGATTGGCTGAT
TTACCATTGCACAAAATATGACCAGGTGGCCTTCTTTGACCCAGACACGG
ATTGCGTACGCTTTTTGCCGCCCGGCGAACGGAGCGCGTCCGGTAGCAGT
ACTACGAGCGCCGTCGGAGCGGCAACGACTAACGGTGTGTCTACTATCTC
GACTGGGAATAAACACGCCAATAAAACGACAGTGGAAACCTACGCCAAAC
AGAATAATGACCCACAGCCGGGATCCCCGGTACATGATACCGCCAATGGC
AGCGGCGGCGGTGGCGGTGGCCTGGAAATTGACGGAGGGAAGCAGAAAAA
AGACAACGTGAGGTCATCACCAGCGTCATCATCGTCACCATTACCACCAC
CACTACCAGAAATTGGTATCCACACCGGAGGTGCTATGGCAGGCGGCGAG
TCCTCCACAAGGACGCCCTCCCCCCAGCATAGTCAGAATAGTAAAGAGGT
CCAGGAGCAGGGGGGAGGGGGGCGGGTGGGTGGCACCGACGATTTTACTG
GCTCTGGACGAAACGGTGTGGACGGAGGAGGTAACAACAAAGGCAGCAAC
GACGTGAGCTGCAGCGCCGGTGCTACTATTCCTGATGATGGCATATGTAG
GATGAATAAGGGAGGACAGAAAGCAACAGACGTTGGACGGAGCCAGGGAG
GGTTAGGGCAGGGGGAGGAAGAGGGACGACGAGAAGGGGAAGCGGCAGAA
GGTAAAGTACGGATACAAGAAAACCAAGAAGAGAAAAAAGACGAAGGCGA
GGGGATGGAGGATGACATAATTGAGTGGAGCACTCTCACGGCGATTCGCG
TGTTGAGCGGCCCCTCGATAGCCGAGCTTGAAAAACGAAGGCAAGCCATG
GAAAAATGGAGTTCCTTGCTGGTGCCGGAGACCGCCGTCGCCGTCGCCGC
CGCCGGCTCAGGCTCACCATCAACGTCGGTAGGACCCGCCGGTGAGCCGG
TGATCAACAGTGACGCCTCGTTAGCGGCGGGGGCGGGCGGAGGCAGCGGC
GGTGATGGTTCGTCTGGGACGGTGAAAGACGACGGGAGAACAACTGCCGC
TTCGACGCCTTTCACGCAGCTGCCGTCCAGCCATAAGCAGCAAAAACAAC
CCCCCTCCGAGGCGGGGGGGAGCGTCGAGTCGACGGTCCAGGGCAGGGGC
AATGGTGGGCGTGCTAGCGCAGGAGGGGGGGGGTCGTCAAAACGTTCTGG
CAAGAAGAAAAAGCGGGGTGGTGCTGCTGTAGGAGTGGCGAGATTCATGG
CAGCATTGACGAATACGTCAATAACGCCTCCATTGCCGGGAAATGGAAGC
TCGGCCGCGACGGCGGCAGCGGTTTCTGCCTCTGTTGCTGCCCCTTCTTC
GGTGTCATGACCGGGGAATGCACTTTTGTTATGCCTAGCGTTTTGAGCGT
TGACTACGCATCTTGGAGAGGAAGAAGCGAGGCGGGGTGGGCGGGGGTAC
GTTTTACCACCACAAATGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig3940:2838..6808+

>mRNA_H-paniculata_contig3940.10244.1 ID=mRNA_H-paniculata_contig3940.10244.1|Name=mRNA_H-paniculata_contig3940.10244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2862bp|location=Sequence derived from alignment at H-paniculata_contig3940:2838..6808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCCTCAGGCGGGCGACGTGCTCGCGTTCAAGATCCTGTCGCTCAA
CGAGGAAACTTGGACTCCCGAACTTTCCGCGTACCGAGAAGCTGAGATGC
GCCCTCAGGCGGGCGACGTGCTCGCGTTCAAGATCCTGTCGCTCAACGAG
GAAACTTGGACTCCCGAACTTTCCGCGTACCGAGAAGCTGAGGTGGCCTT
CTTTGACCCAGACACGGATTGCGTACGCTTTTTGCCGCCCGGCGAACGGA
GCGCGTCCGGTAGCAGTACTACGAGCGCCGTCGGAGCGGCAACGACTAAC
GGTGTGTCTACTATCTCGACTGGGAATAAACACGCCAATAAAACGACAGT
GGAAACCTACGCCAAACAGAATAATGACCCACAGCCGGGATCCCCGGTAC
ATGATACCGCCAATGGCAGCGGCGGCGGTGGCGGTGGCCTGGAAATTGAC
GGAGGGAAGCAGAAAAAAGACAACGTGAGGTCATCACCAGCGTCATCATC
GTCACCATTACCACCACCACTACCAGAAATTGGTATCCACACCGGAGGTG
CTATGGCAGGCGGCGAGTCCTCCACAAGGACGCCCTCCCCCCAGCATAGT
CAGAATAGTAAAGAGGTCCAGGAGCAGGGGGGAGGGGGGCGGGTGGGTGG
CACCGACGATTTTACTGGCTCTGGACGAAACGGTGTGGACGGAGGAGGTA
ACAACAAAGGCAGCAACGACGTGAGCTGCAGCGCCGGTGCTACTATTCCT
GATGATGGCATATGTAGGATGAATAAGGGAGGACAGAAAGCAACAGACGT
TGGACGGAGCCAGGGAGGGTTAGGGCAGGGGGAGGAAGAGGGACGACGAG
AAGGGGAAGCGGCAGAAGGTAAAGTACGGATACAAGAAAACCAAGAAGAG
AAAAAAGACGAAGGCGAGGGGATGGAGGATGACATAATTGAGTGGAGCAC
TCTCACGGCGATTCGCGTGTTGAGCGGCCCCTCGATAGCCGAGCTTGAAA
AACGAAGGCAAGCCATGGAAAAATGGAGTTCCTTGCTGGTGCCGGAGACC
GCCGTCGCCGTCGCCGCCGCCGGCTCAGGCTCACCATCAACGTCGGTAGG
ACCCGCCGGTGAGCCGGTGATCAACAGTGACGCCTCGTTAGCGGCGGGGG
CGGGCGGAGGCAGCGGCGGTGATGGTTCGTCTGGGACGGTGAAAGACGAC
GGGAGAACAACTGCCGCTTCGACGCCTTTCACGCAGCTGCCGTCCAGCCA
TAAGCAGCAAAAACAACCCCCCTCCGAGGCGGGGGGGAGCGTCGAGTCGA
CGGTCCAGGGCAGGGGCAATGGTGGGCGTGCTAGCGCAGGAGGGGGGGGG
TCGTCAAAACGTTCTGGCAAGAAGAAAAAGCGGGGTGGTGCTGCTGTAGG
AGTGGCGAGATTCATGGCAGCATTGACGAATACGTCAATAACGCCTCCAT
TGCCGGGAAATGGAAGCTCGGCCGCGACGGCGGCAGCGGTTTCTGCCTCT
GTTGCTGCCCCTTCTTCGGTGTCATGAGTGGCCTTCTTTGACCCAGACAC
GGATTGCGTACGCTTTTTGCCGCCCGGCGAACGGAGCGCGTCCGGTAGCA
GTACTACGAGCGCCGTCGGAGCGGCAACGACTAACGGTGTGTCTACTATC
TCGACTGGGAATAAACACGCCAATAAAACGACAGTGGAAACCTACGCCAA
ACAGAATAATGACCCACAGCCGGGATCCCCGGTACATGATACCGCCAATG
GCAGCGGCGGCGGTGGCGGTGGCCTGGAAATTGACGGAGGGAAGCAGAAA
AAAGACAACGTGAGGTCATCACCAGCGTCATCATCGTCACCATTACCACC
ACCACTACCAGAAATTGGTATCCACACCGGAGGTGCTATGGCAGGCGGCG
AGTCCTCCACAAGGACGCCCTCCCCCCAGCATAGTCAGAATAGTAAAGAG
GTCCAGGAGCAGGGGGGAGGGGGGCGGGTGGGTGGCACCGACGATTTTAC
TGGCTCTGGACGAAACGGTGTGGACGGAGGAGGTAACAACAAAGGCAGCA
ACGACGTGAGCTGCAGCGCCGGTGCTACTATTCCTGATGATGGCATATGT
AGGATGAATAAGGGAGGACAGAAAGCAACAGACGTTGGACGGAGCCAGGG
AGGGTTAGGGCAGGGGGAGGAAGAGGGACGACGAGAAGGGGAAGCGGCAG
AAGGTAAAGTACGGATACAAGAAAACCAAGAAGAGAAAAAAGACGAAGGC
GAGGGGATGGAGGATGACATAATTGAGTGGAGCACTCTCACGGCGATTCG
CGTGTTGAGCGGCCCCTCGATAGCCGAGCTTGAAAAACGAAGGCAAGCCA
TGGAAAAATGGAGTTCCTTGCTGGTGCCGGAGACCGCCGTCGCCGTCGCC
GCCGCCGGCTCAGGCTCACCATCAACGTCGGTAGGACCCGCCGGTGAGCC
GGTGATCAACAGTGACGCCTCGTTAGCGGCGGGGGCGGGCGGAGGCAGCG
GCGGTGATGGTTCGTCTGGGACGGTGAAAGACGACGGGAGAACAACTGCC
GCTTCGACGCCTTTCACGCAGCTGCCGTCCAGCCATAAGCAGCAAAAACA
ACCCCCCTCCGAGGCGGGGGGGAGCGTCGAGTCGACGGTCCAGGGCAGGG
GCAATGGTGGGCGTGCTAGCGCAGGAGGGGGGGGGTCGTCAAAACGTTCT
GGCAAGAAGAAAAAGCGGGGTGGTGCTGCTGTAGGAGTGGCGAGATTCAT
GGCAGCATTGACGAATACGTCAATAACGCCTCCATTGCCGGGAAATGGAA
GCTCGGCCGCGACGGCGGCAGCGGTTTCTGCCTCTGTTGCTGCCCCTTCT
TCGGTGTCATGA
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