prot_H-paniculata_contig3940.10244.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3940.10244.1
Unique Nameprot_H-paniculata_contig3940.10244.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length477
Homology
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BLAST of mRNA_H-paniculata_contig3940.10244.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.700e-9
Identity = 34/47 (72.34%), Postives = 35/47 (74.47%), Query Frame = 0 
Query:    1 MRPQAGDVLAFKILSLNEETWTPELSAYREAEVAFFDPDTDCVRFLP 47
            MRPQ  DVLAFK LSLNEETWTPELS YR AEV  FD  +  VR LP
Sbjct:  186 MRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLP 232
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BLAST of mRNA_H-paniculata_contig3940.10244.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.820e-8
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0 
Query:    1 MRPQAGDVLAFKILSLNEETWTPELSAYREAEVAFFDPDTDCVRFLP 47
            MRPQ  DVLAFK LSLNEETWTPELS YR AEV  FD  +  VR  P
Sbjct:  647 MRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRP 693
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3940.10244.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI8.700e-972.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE8.820e-870.21Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3940contigH-paniculata_contig3940:2871..6697 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3940.10244.1mRNA_H-paniculata_contig3940.10244.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3940 2838..6808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3940.10244.1 ID=prot_H-paniculata_contig3940.10244.1|Name=mRNA_H-paniculata_contig3940.10244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=477bp
MRPQAGDVLAFKILSLNEETWTPELSAYREAEVAFFDPDTDCVRFLPPGE
RSASGSSTTSAVGAATTNGVSTISTGNKHANKTTVETYAKQNNDPQPGSP
VHDTANGSGGGGGGLEIDGGKQKKDNVRSSPASSSSPLPPPLPEIGIHTG
GAMAGGESSTRTPSPQHSQNSKEVQEQGGGGRVGGTDDFTGSGRNGVDGG
GNNKGSNDVSCSAGATIPDDGICRMNKGGQKATDVGRSQGGLGQGEEEGR
REGEAAEGKVRIQENQEEKKDEGEGMEDDIIEWSTLTAIRVLSGPSIAEL
EKRRQAMEKWSSLLVPETAVAVAAAGSGSPSTSVGPAGEPVINSDASLAA
GAGGGSGGDGSSGTVKDDGRTTAASTPFTQLPSSHKQQKQPPSEAGGSVE
STVQGRGNGGRASAGGGGSSKRSGKKKKRGGAAVGVARFMAALTNTSITP
PLPGNGSSAATAAAVSASVAAPSSVS*
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