mRNA_H-paniculata_contig394.10242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig394.10242.1
Unique NamemRNA_H-paniculata_contig394.10242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 8.090e-79
Identity = 149/228 (65.35%), Postives = 172/228 (75.44%), Query Frame = 2 
Query:  128 KPASKTKNAKSAPPPLKVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFV-VAKPDKTTDKNGALT---------------PVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKERGAKRMRDSQRAVVVGSS 763
            KP SK K+A+S+P  LKVVVRRLPH MKEE+F+EA+  AA++AGMG RGGSWDL++F  GKMSKKRGRVTGTAYL IDR RG  A DLSL KLRAA+ AS+     A+P  ++ K G+                 P VEAAPFQKLFKQKPKRD RVGTIEKD  YK+FCAAL  P   LP ADVQADI+ESEGKE+PKP NALLDFL+ERGA+R+RDSQRA  +GSS
Sbjct:   11 KPPSKAKSARSSPSLLKVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANA-DLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSS 237
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BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.140e-23
Identity = 76/210 (36.19%), Postives = 110/210 (52.38%), Query Frame = 2 
Query:  146 KNAKSAPP-PLKVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRG---GVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPK-----------PSNALLDFLKERGAKRMR 730
            K A++ PP P+K+VVRRL      E F   +   AAEA    R  ++ +++++ GK+SKKRG++TG  YL ++R  G     A D             +    A PD       A  P+VE AP+Q++F+ KP+RD   GT E+DPDY++FCAAL +P   LP ADVQ D + +                  P  AL+ +++ER A R R
Sbjct:   53 KEARAPPPAPIKIVVRRLSPYFTPEDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAGVTPAAAVDAVAXXXXXXXXXFDTHARADPD-------AARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQRAAXXXXXXXXXXXXXXXXGAPVAALVQYIRERRAARAR 255
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BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 6.810e-13
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 2 
Query:  176 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKM-SKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 712
            KVV+R++PHD+ EE     +  A   +    R   W    F  GK+    R    G  YL  D  +    A   + +L+ A + S++             G +T  V+ APFQK+ ++K +RD +VGTIEKDP+Y +F   LAKP   LP AD+  D K+    E  KP  AL+ +L ER
Sbjct:  114 KVVIRQIPHDVDEETVYARILDAHDVS----RSHIW---RFVPGKVRGNNRPPYPGRLYL--DFKKDTEXATSVVAQLKGAEITSSK-------------GTVTLDVDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAE--KPVAALVQYLNER 269
[Close]
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 1.350e-12
Identity = 64/179 (35.75%), Postives = 92/179 (51.40%), Query Frame = 2 
Query:  176 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 712
            KV+VR +PH M  ++ LE +     +A    R   W    F  GK+ +   RV     L +D  +    A   + KL   +++          K T K       V+ APFQK+ ++K ++D ++GTI++DPD+ +F   LAKP   LP ADV AD KESEG E  KP  AL+ +L ER
Sbjct:  100 KVLVRDIPHTMDLDKMLEVL-----DANGVARDSVW---RFVPGKV-RGNNRVPRPGRLYLDFKKETELAKTVITKLDGYVLSDV--------KDTPKLQ-----VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254
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BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: K3XC97_GLOUD (Smg4_UPF3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC97_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 8.590e-12
Identity = 66/180 (36.67%), Postives = 88/180 (48.89%), Query Frame = 2 
Query:  176 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKM-SKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 712
            KVVVR +PH   E+        A  EA    R   W    F  GK+    R   TG  YL + +          L + R  I A N  V+   D T D    L   VE AP+QK+ + K ++DA+VGTI++DP+Y +F   LAKP   LP A+V AD  E +  E  KP  AL+ ++ ER
Sbjct:   95 KVVVRNIPHTTDEDAIW-----ALVEAHGVTRESLW---RFVPGKVRGNNRQPTTGRMYLDLKK---------DLEQARRLIAALNGHVL---DVTADPPARLE--VEFAPYQKIPRDKQRKDAKVGTIDRDPEYLAFLEELAKPKEKLPSAEVVADTAEVDVAE--KPVAALVKYMNER 250
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BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: W2PRS1_PHYPN (Smg4_UPF3 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PRS1_PHYPN)

HSP 1 Score: 74.7 bits (182), Expect = 2.410e-10
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:  455 KTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 712
            +T DK+G     VE APFQK+ ++K ++DA+VGTI++DP+Y +F   LAKP   LP A+   DI E E  E  KP  AL+ +L ER
Sbjct:  160 ETKDKDGVKPLDVEFAPFQKVPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDIAEGETVE--KPVAALVKYLNER 243
[Close]
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: UPI0013901B14 (regulator of nonsense transcripts 3B n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901B14)

HSP 1 Score: 73.2 bits (178), Expect = 9.240e-10
Identity = 64/202 (31.68%), Postives = 95/202 (47.03%), Query Frame = 2 
Query:  104 GKKSTSKGKPASKTKNAKSAPPPLKVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVT-GTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLK 706
            GK  T KGK   KTK  K+     KVV+RRLP  +KEE+  E +                D  +F  G+MS   G V    AY+              ++K R     S+ F         +K      VVE AP+Q + ++K ++DA+ GTI++D DY+SF  +L + T  LP  +   +  E+  +++ K S  LL+FLK
Sbjct:    2 GKTETEKGKSPIKTKRDKAFFQ-TKVVIRRLPPSLKEEELKEYLGDLPEH----------DFFYFVDGQMSF--GPVLFSRAYINFKN-------QEDIIKFRDQFDGSSFF--------DNKGNEYPAVVEYAPYQGVPRKKNRKDAKCGTIDEDKDYQSFLQSLEEETEPLPSVESHLEEIEARKEDNSKKSTPLLEFLK 175
[Close]
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A3M6VSA1_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSA1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.590e-9
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 2 
Query:  176 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLI-HFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPV-VEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 712
            K+VVR +P    EE+  E +          G G   ++I  F  G+  +K  R    A L +D  +        +  L   +   N        +TTD    + P+ VE APFQK+ ++K ++DA+VGTI++DP+Y +F   LAKP   LP A+   D+ E E  E  KP  AL+ +L ER
Sbjct:   77 KLVVRNIPPTTSEEEVREMLK---------GYGIGHEVIWRFVPGRNRRKNNREPIPARLYLDLKKQPEKIKTLIAALHGQLFCFNV------KETTD----IKPLEVEFAPFQKIPREKQRKDAKVGTIDRDPEYVAFLNELAKPKDKLPSAEPVVDMAEGETVE--KPVAALVKYLNER 236
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BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A329S293_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S293_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.650e-9
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 2 
Query:  455 KTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 712
            +T DK GA    VE APFQK+ ++K ++DA+VGTI++DP+Y +F   LAKP   LP A+   D+ E E  E  K   AL+ +L ER
Sbjct:  160 ETKDKEGAKPLDVEFAPFQKIPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDMAEGETVE--KTVAALVKYLNER 243
[Close]
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A0D3FW67_9ORYZ (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3FW67_9ORYZ)

HSP 1 Score: 72.4 bits (176), Expect = 2.010e-9
Identity = 66/196 (33.67%), Postives = 98/196 (50.00%), Query Frame = 2 
Query:  176 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESE----GKEDPKPSNALLDFLKERGAKRMRDSQRAVV 751
            KVV+RRLP  + ++  +E V     +A  GGR   +D   F  G  S+K  R +   YL   +G   V          A +   + FV        +K      +VE AP Q++ K   K+DAR GTI KDP+Y  F  +++KP   LP A++Q + KE+E    GKE P  +  ++   ++R AK M  +Q+AVV
Sbjct:   16 KVVLRRLPPAIAQQAVVEQV-----DARFGGR---YDWSCFRPGNASQKNHRYS-RLYLNF-KGPEDVVEF-------AEVFNGHVFV-------NEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSM--AQQAVV 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCG9_ECTSI8.090e-7965.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7E8_9STRA2.140e-2336.19Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A2D4CDX7_PYTIN6.810e-1335.00Smg4_UPF3 domain-containing protein n=1 Tax=Pythiu... [more]
A0A8K1FA17_PYTOL1.350e-1235.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XC97_GLOUD8.590e-1236.67Smg4_UPF3 domain-containing protein n=1 Tax=Globis... [more]
W2PRS1_PHYPN2.410e-1047.67Smg4_UPF3 domain-containing protein n=8 Tax=Phytop... [more]
UPI0013901B149.240e-1031.68regulator of nonsense transcripts 3B n=1 Tax=Nemat... [more]
A0A3M6VSA1_9STRA1.590e-933.15Smg4_UPF3 domain-containing protein n=2 Tax=Perono... [more]
A0A329S293_9STRA1.650e-946.51Smg4_UPF3 domain-containing protein n=2 Tax=Phytop... [more]
A0A0D3FW67_9ORYZ2.010e-933.67Uncharacterized protein n=1 Tax=Oryza barthii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig394contigH-paniculata_contig394:17690..24009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog65071.PYU1_T014846
Preferred nameUPF3B
KEGG rclassRC00002
KEGG koko:K00968,ko:K14328
KEGG ReactionR01890,R02590
KEGG Pathwayko00440,ko00564,ko01100,ko03013,ko03015,ko05231,map00440,map00564,map01100,map03013,map03015,map05231
KEGG ModuleM00090,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000184,GO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005815,GO:0005829,GO:0005844,GO:0005856,GO:0006139,GO:0006259,GO:0006310,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0008406,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016567,GO:0017056,GO:0019222,GO:0019439,GO:0019538,GO:0022414,GO:0030539,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0036211,GO:0040035,GO:0042162,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0045727,GO:0046483,GO:0046661,GO:0046700,GO:0046907,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070478,GO:0070647,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1990904,GO:2000112
EggNOG free text desc.Smg-4/UPF3 family
EggNOG OGs1MGXT@121069,KOG1295@1,KOG1295@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-26_005010.1
EC2.7.7.15
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons4
Model size2296
Cds size1452
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig394.10242.1prot_H-paniculata_contig394.10242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig394 18452..23927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.5570958-UTR-H-paniculata_contig394:17689..184511622930207.5570958-UTR-H-paniculata_contig394:17689..18451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig394 17690..18451 -
1691481190.9200056-UTR-H-paniculata_contig394:17689..184511691481190.9200056-UTR-H-paniculata_contig394:17689..18451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig394 17690..18451 -
1622930207.686656-UTR-H-paniculata_contig394:23927..240091622930207.686656-UTR-H-paniculata_contig394:23927..24009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig394 23928..24009 -
1691481190.9987683-UTR-H-paniculata_contig394:23927..240091691481190.9987683-UTR-H-paniculata_contig394:23927..24009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig394 23928..24009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.5743124-CDS-H-paniculata_contig394:18451..194711622930207.5743124-CDS-H-paniculata_contig394:18451..19471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 18452..19471 -
1691481190.9428363-CDS-H-paniculata_contig394:18451..194711691481190.9428363-CDS-H-paniculata_contig394:18451..19471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 18452..19471 -
1622930207.5900245-CDS-H-paniculata_contig394:20192..203751622930207.5900245-CDS-H-paniculata_contig394:20192..20375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 20193..20375 -
1691481190.9596717-CDS-H-paniculata_contig394:20192..203751691481190.9596717-CDS-H-paniculata_contig394:20192..20375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 20193..20375 -
1622930207.608609-CDS-H-paniculata_contig394:21870..220231622930207.608609-CDS-H-paniculata_contig394:21870..22023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 21871..22023 -
1691481190.976901-CDS-H-paniculata_contig394:21870..220231691481190.976901-CDS-H-paniculata_contig394:21870..22023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 21871..22023 -
1622930207.626699-CDS-H-paniculata_contig394:23831..239271622930207.626699-CDS-H-paniculata_contig394:23831..23927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 23832..23927 -
1691481190.9885957-CDS-H-paniculata_contig394:23831..239271691481190.9885957-CDS-H-paniculata_contig394:23831..23927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig394 23832..23927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig394.10242.1

>prot_H-paniculata_contig394.10242.1 ID=prot_H-paniculata_contig394.10242.1|Name=mRNA_H-paniculata_contig394.10242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=484bp
MVSTEVKGKKSTSKGKPASKTKNAKSAPPPLKVVVRRLPHDMKEEQFLEA
VTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVA
ADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKP
KRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPS
NALLDFLKERGAKRMRDSQRAVVVGSSGGGSGSRRSGGTSTSSRSGGTGG
GASGSRSSGGVASSSASMPTENSSTPSDTAPRAPVTDPGSKAAKPKGAEK
EGRAGGGGKAGLRSNTPPPSSTQKLSGGSKSLSSAVAAAGNSSLVDGQSS
KGLSSAGSSSSGHAKTTGSGRESSGGGGGSSTNNRGRAAAKASSSKNSGG
SSSNSKSSSTTAVAKPSAILSKPKDNNATAGLVVSMMGASGGPTDSPRSS
TGSGGGGGRGSSRSKGSGGGKGRSSGKSAGGGH*
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mRNA from alignment at H-paniculata_contig394:17690..24009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig394.10242.1 ID=mRNA_H-paniculata_contig394.10242.1|Name=mRNA_H-paniculata_contig394.10242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6320bp|location=Sequence derived from alignment at H-paniculata_contig394:17690..24009- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTTCGTGGGCTGGGCGGTGGAATGAGAGAGCGTGCGATCACCAGAC
ACGGTCTCACCGATTTGTGAGGTGTGCCCACTATGGTAAGCACAGAAGTG
AAAGGGAAAAAATCCACCTCGAAGGGCAAGCCAGCATCCAAAACGAAGAA
TGCAAAGTCAGCTCCTCCTCCCCTGAAGGTGAGGCAGATCAAAGTGCTGT
CTATAGATACCTCTGGTATTGGGGAGATTGGGGTTATGTGCTGCTGATGT
ATCTGTGAGCTCACCTTTCATATTTGTTTGCCTTGATACACACAAGCCCA
TAGTCAGCACCAAGCATATTTTTTGTTCTAAAGAGGATCTGCTGCCATCT
TCACCTCGTGAGCGACAACAGTAGATGACCAATTATCGACCCTGTTCCGC
TGGCCTTCATACTTGCAGTTTCCGAGTACTTTAACAATAGGAAGAGGACT
AGAAAAGGGTACAGTTAAAATCGACTTCTCTGCCCGATGTCTCCAGTCAA
AATTGGTGATTATCTTGTGAGGCCGTCTTCGCAAATTCCAAATCACAGCA
TAAATGTAAATGTGTTTTTAATCGCACGCACACCGCTTTGACAGCATACT
TATGTCAAATGTAACTTTTGCCAACGAACATACACGAGCCCTGCCAACGA
AGTCAGGGCAAATATAAGCTCTGCTGACTCACAACATGGTTTATGGGTGG
TTAGGATTAGGGTTATTGATCGTCCATTGTACATTTTGTGTTTCTCTTTC
TTTCTCTTTCTCTCTTTTTCTTTCTTTTTCTTTCTTTTTCTCTCTTTTTC
ATAAATTTCCTCGATTTATTTTTGTTGAGTGTGGGCCTGTAGCACGATGA
ATTTTTGCCAGAAAGTTGCGAAACTGATGAAGCATGGGGATACAAATTGC
AGGCACAATTCGCACTCATCTATGTCCTAAATCTAAAATTTTGAAAAAGA
AGAAAAAGAAAGAGTAAGTAAGGGGGAAAAGGAAGTGTATTCTCTCATTC
AGAAATACCCTCAGAGCCCAGTAGATGTAGTCTGCGCTCGGGGCAGCGAA
GGACTACTCACTGGTTCAAGTAGTTGACAAGAAATGATACCTGAGTAAAT
ATTCAAGTCAGAGAGCTATTGACTGCAGTAGACAATTTTGAATCTACTAA
AGGCGTAACAACTTGGAGCCGAATGATAGCCCTGTTTTGATGTATTTTTT
GTTGATTATAGTTGAGATAGCCAGTGTTGTACAGGTACAGACTGCTGCAC
TATAATACCTTGTACTGTCTGTCTACTCCACGCTATCTGTTTTGTGTTGA
GCTGCCGCCGAGATCTACGCAGAAAGAAGGGTACATCTTGAAATCCAAAT
TAAATTAAACAACACGAACACTTTCCAATCAACGTCCGGCAAACAAATCA
GAATTGCCAGCTAACCTTCCAGTATTGATGTCTATATTCGCTGTCACCAT
TTCGTACTTGCACCTGTATGTGTTTGATTTTACCATGGTCCAGGCGGGTG
CACTTGTAATTTCATGCACGGTGCTTTACTGTATCCATACTTCACCCAAC
CACTTCTCAGCTTCGGGTAGCGCAACGCGCACGGAATAAAAAGGTGTCCT
TCCTTTCATTCAGAGATGACACGTCATGTTAACACAAGTGGCCGTGAGGC
ACAGGCCATTGATACTTGAGGTTGGAAAATCTTGCCGCAATTTTGCACGA
ATTTTAGGGGCGCCATTTAGAGGGATCTCGATTAAGTGTATGGACCTGTC
GCAGATAGACGAACGGGTATGTCGGATATGTTTGGCCACTTGGAAAATGT
AAATTGTTCAAATCTATGGTTGAAGAAAAACGCTTGATAAACCGCGTAGT
TGGCATCATCGTGCAATCATGCTGGCTCTCTGGGCGTAATTTTCGATTTT
TCCATTACCAGTGAACAATTCAAACTGAACTTATGTAAGGCTGGCTGGTG
CTGGCCGACCGAAACCACAACCCTGAAAAATAACAGGTAGTGGTGCGCCG
GCTGCCGCACGATATGAAAGAGGAGCAGTTCCTTGAGGCGGTGACGCCGG
CAGCCGCGGAAGCGGGCATGGGCGGACGAGGTGGCTCTTGGGACCTTATA
CACTTTGCTTCCGGCAAAATGAGCAAGAAGCGAGGCAGGGTAAGAAAGCG
TCGATCCCGACGTGGAACGTATTTTGTTTTGCCTGCTGACTTCCAGACCC
ACGCTTGATCCCCCCTCCAACACAAGCTGCGCAATAGGATCGCTTCCAGC
TCGTATGCCGAATTACTGCGGAGATTGAATGCCGGATACATAACAGACAG
GGGAGTTGTACTGGTATCGAGGGGCAAAAGGAACGTTATTCGACCGACCC
GAGTCTTCCCGCGAGTAGTTTCGGCCCAGGTGCATGGTGTGCACTCGCCG
TGAGAGTGATTTTTTCGGGTTAGAAGGGGAGGCATGAACGACTGACACCC
CGAAAACAACCCCACCTTTACCCACCGGAATTATCATTTGTAAGTCAACC
AACTTGCCACAGTTAGGAATTATGTAGCTCTTGCGCTCATATAGTAACTC
GATTGTACCCATATCGAGGTTATGCAACTGACTTGATGTGTACACTGATC
AGCAAAAATTGATCAAAACCAAGGGGGGGGGAGGGACTTATTTATTTATA
TTTGCAGCTTCTTCATGCATGCATACGTGTCACGCTAAGGTATGTTATGC
GTCGTGTACCTCAGAGTCGTGGAGAGTAACTGTGAATCAGCACCCCTTAA
GTATCAAAGGGGGGGTACGCCCTGTCACTGTTGAGTTACGTTTCGCCGGG
GCTTGGTCGTTGCCAAGTTGTGTCATGGAACTAGTGTCATTTTATATCTT
TTTGAACGCGACCAAATTTGGCTTGTTTGTGATTGCGTTTGCTCGGTCTG
TTGAGTTGTGCTCTGCCATCGCAGATAAAAGGTGCCTATTGTATTTTGAA
TTTCAAACGAGGCACGTGGTCTTATAGTGTACGGAAAGGGCACGAATTGA
GTCTGCCTTCCCAGATGGAACAGTCTTGCCCAACGTCTTCTGCATTATGT
ATTCTTGTTCAGTTATTCATTACTTTCACCCCCCCAAATCCATAACATGT
GTGGGAAAATATGTCATTTTGTCATCTGGGATGGCACCATACACCCAACT
CTATGTATATCTCTGTGTGTGTGTTAATGTTAGCTTCAATTCTAACAGAT
TGAGACTGCAAGGCGATGCATAGAATGATCGCACACTTCATAGAGCGGCG
TGTCATCTCCCAACCCGAATCAGTAATCCCGAGCGATACGAATGTTGATG
AGCTGAGGCCCCGCATTGTGGTTGGTACAGACTTTAGAGTGCACGATGTT
TGAGCTCCGCTGTGCAGATTATTTTACGCTCCGTTCGATCGGCATCATTT
TTTTACGATTGCTCCGTGTTTTCTGGGTTAACTTATGTATATATTATGTC
CTCGACATGTGACAAATGTCGAAAAAAAAAAAAATTGTACGTCGTGCTTC
ATTTGTTTTTTGCATTATTTGTGATTTGTGTTTTGCGGGGGGGGCGTTTC
TTGTTGTCATCGTCGTCATCGTCGTCATCGTCCTCTTCGTCCTCTTCGTC
CCTTCTTTTGCAAAACCGAAAACGTATTACACAGGTGACAGGGACGGCTT
ATCTTCGCATTGATCGCGGACGGGGAGGGGTAGCCGCCGACCTCAGCCTC
ATGAAGCTGCGGGCGGCAATCGTCGCATCCAACGAATTCGTCGTAGCCAA
GCCCGACAAAACGACGGACAAGAATGGGGCCCTTACCCCAGTGGTTGAGG
CTGCTCCCTTTCAAAAGGTAACACACGTTCTCGTCGGGTTTTCCTGTCTC
AACCATGACACGGGGACACCGACTGGGGGTGACTGGCGTTGAACGTAGCC
GTCCTTCGGGAAAATGTATGAATGGCTGGTGGAAATATTCCACATTTTCT
CCGTCGTACAGAATTGAACGAGAGAGAGAGAACAGGAGTCGGGTGTAAAC
GATTGAAAACCCGCAGGGGAAGCTTTCGGTCGTTCTGGTGTGTCTTTCGG
TGTGACCTTCGTCAGTAAGCTCTGAGGGTGCAACGTCACGGAACTTGCTC
AAGCTGCGCGCCGTGAGCTTGTCGTTGTGCCAAACGGGGTCTCCCAACAG
AGAGATACACTCGCCAGTCTACGCTTTGGACTACGTACTTCACGTTTGTG
CTTTGACCCCACACTTGCTCTTTTCGGCAGTTCGAAATACATGTTGTTAG
AAGAACTGTCTCGTAGCCATATCAAGGCGCAGGCGGCAATCGTCGTGTTG
GAGTCAAAACTCCTCATTGACGCATGGTCAATGGTAGTTGGACGAAGGCC
AAGGATGATCGAGTCGGCCACAGCAGCGCGAACTTTGTTGATCTCTACAC
CAGTACGTGAAAGAGGCGAGTAGCCTGCTGAGGAGCGGGGGCATCACCCC
CCCCCCCCCCTTCACGTCTGTGATGCTACAACAAGAAGCTTTCGTTCTGC
GCACACGCATGTTCCCCTCTTGTGTTAACTGTCCATAGCTATTCAAGCAG
AAACCTAAGCGGGATGCTCGCGTTGGCACCATTGAGAAGGACCCGGACTA
CAAGTCGTTCTGCGCGGCGCTGGCAAAACCCACGACGATGCTGCCTGGTG
CTGACGTTCAAGCGGACATTAAAGAATCCGAGGGCAAAGAAGACCCCAAG
CCGTCCAATGCACTCCTGGACTTCCTCAAGGAGCGAGGAGCGAAGCGAAT
GCGTGACAGCCAGCGCGCTGTGGTCGTCGGTAGCAGCGGTGGTGGCAGCG
GCAGCCGACGAAGCGGCGGGACCTCAACCAGCAGCCGGTCGGGAGGAACA
GGAGGGGGTGCGTCTGGCAGTCGTTCGTCCGGCGGCGTCGCCAGCAGTAG
TGCATCTATGCCCACCGAAAACTCGAGCACGCCGTCTGACACCGCTCCGC
GAGCCCCGGTGACAGACCCCGGTAGTAAGGCGGCGAAGCCGAAAGGTGCC
GAAAAGGAAGGGCGAGCAGGAGGGGGCGGGAAGGCTGGCTTGCGCTCGAA
CACGCCTCCCCCGTCATCTACCCAAAAACTATCCGGCGGCTCCAAGTCAT
TATCATCGGCCGTGGCGGCAGCTGGTAATTCCAGCTTGGTAGATGGGCAA
TCTAGTAAGGGTCTCTCGAGTGCAGGATCGAGCTCGAGCGGCCATGCGAA
GACGACGGGCAGCGGTCGAGAATCGAGCGGCGGCGGCGGCGGCAGCAGCA
CCAACAATAGGGGTAGGGCTGCTGCCAAAGCCTCGAGTAGCAAAAACAGT
GGTGGTAGCAGTAGCAATAGCAAGAGTAGTTCCACAACCGCTGTCGCGAA
GCCTTCCGCTATTCTGTCGAAACCCAAGGATAACAACGCAACTGCTGGCC
TCGTCGTCTCGATGATGGGTGCGAGTGGAGGACCCACAGATTCTCCCCGC
AGCAGTACCGGCAGCGGCGGTGGCGGGGGTCGAGGGAGCAGTCGCTCAAA
GGGCAGCGGCGGTGGAAAGGGCCGATCGAGTGGGAAATCTGCCGGCGGCG
GTCACTGAAGAGGCGGCAGCGGCGGCGGCAGAGAAGGGTAGAACCAACAG
TAGTCGTTTGTCATGTTGGTTGTGCTTAGTTGGTACCTCGAGCCCACAAC
GGAGGGCGCTACCGTGGTGTGTTCCAGCCAAACCGAAGTGTGAATATTTT
TCTTTTGGCCTGTTTTCGCAGATTGCAAGTGGGGGATTGGTGTTTACAGA
TAATTGATTTTGTTGTATTCGGTCTCATTTACTCAACAGCAGAAGACTTT
TCCAGGTTCAGCTTGAACGGTGCTTGGAATAGTGTCGGTAGTTCCGCAAG
TGGCGCCCACACGAGATGATGAGGGCGTAGAATAGAAACGAAATCCACAG
GTGAAGAGTTGTACATCACATGGTTGAACGCGGTGCACATGTGCACACGA
AGGCAACCAGCCGCAGCACGCGCTCTTGAATATATCTGATGGAGGACCAA
GACGCTGTCCGTTTTCGTAGGTTATCATGCTGCAAGTTTCGAATAGTAGC
CGCACCCAAAAACAATTTGGCTTGGCGTGTCGGAGTTACCGAAATATTTT
CTCTTTTCTAGATTTGTCGCGGAGAGTTGAATGCAGCTGGGCGTATTGTG
TATAGGTGTGCTTTTCATTCAAGTTTACGGTATGTCTTCGATACATCATA
TCTCATGGACATCCGTCGAGCCGTGTTTGCAGGTTTGATGAGCCCACTGC
AAGTCTGGATGCCTTGGTATACGAGTCCACCGGAAATCAGCGAAGCGCGT
TGAGCTCATAAGTATTTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig394:17690..24009-

>mRNA_H-paniculata_contig394.10242.1 ID=mRNA_H-paniculata_contig394.10242.1|Name=mRNA_H-paniculata_contig394.10242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2904bp|location=Sequence derived from alignment at H-paniculata_contig394:17690..24009- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAGCACAGAAGTGAAAGGGAAAAAATCCACCTCGAAGGGCAAGCC
AGCATCCAAAACGAAGAATGCAAAGTCAGCTCCTCCTCCCCTGAAGATGG
TAAGCACAGAAGTGAAAGGGAAAAAATCCACCTCGAAGGGCAAGCCAGCA
TCCAAAACGAAGAATGCAAAGTCAGCTCCTCCTCCCCTGAAGGTAGTGGT
GCGCCGGCTGCCGCACGATATGAAAGAGGAGCAGTTCCTTGAGGCGGTGA
CGCCGGCAGCCGCGGAAGCGGGCATGGGCGGACGAGGTGGCTCTTGGGAC
CTTATACACTTTGCTTCCGGCAAAATGAGCAAGAAGCGAGGCAGGGTAGT
GGTGCGCCGGCTGCCGCACGATATGAAAGAGGAGCAGTTCCTTGAGGCGG
TGACGCCGGCAGCCGCGGAAGCGGGCATGGGCGGACGAGGTGGCTCTTGG
GACCTTATACACTTTGCTTCCGGCAAAATGAGCAAGAAGCGAGGCAGGGT
GACAGGGACGGCTTATCTTCGCATTGATCGCGGACGGGGAGGGGTAGCCG
CCGACCTCAGCCTCATGAAGCTGCGGGCGGCAATCGTCGCATCCAACGAA
TTCGTCGTAGCCAAGCCCGACAAAACGACGGACAAGAATGGGGCCCTTAC
CCCAGTGGTTGAGGCTGCTCCCTTTCAAAAGGTGACAGGGACGGCTTATC
TTCGCATTGATCGCGGACGGGGAGGGGTAGCCGCCGACCTCAGCCTCATG
AAGCTGCGGGCGGCAATCGTCGCATCCAACGAATTCGTCGTAGCCAAGCC
CGACAAAACGACGGACAAGAATGGGGCCCTTACCCCAGTGGTTGAGGCTG
CTCCCTTTCAAAAGCTATTCAAGCAGAAACCTAAGCGGGATGCTCGCGTT
GGCACCATTGAGAAGGACCCGGACTACAAGTCGTTCTGCGCGGCGCTGGC
AAAACCCACGACGATGCTGCCTGGTGCTGACGTTCAAGCGGACATTAAAG
AATCCGAGGGCAAAGAAGACCCCAAGCCGTCCAATGCACTCCTGGACTTC
CTCAAGGAGCGAGGAGCGAAGCGAATGCGTGACAGCCAGCGCGCTGTGGT
CGTCGGTAGCAGCGGTGGTGGCAGCGGCAGCCGACGAAGCGGCGGGACCT
CAACCAGCAGCCGGTCGGGAGGAACAGGAGGGGGTGCGTCTGGCAGTCGT
TCGTCCGGCGGCGTCGCCAGCAGTAGTGCATCTATGCCCACCGAAAACTC
GAGCACGCCGTCTGACACCGCTCCGCGAGCCCCGGTGACAGACCCCGGTA
GTAAGGCGGCGAAGCCGAAAGGTGCCGAAAAGGAAGGGCGAGCAGGAGGG
GGCGGGAAGGCTGGCTTGCGCTCGAACACGCCTCCCCCGTCATCTACCCA
AAAACTATCCGGCGGCTCCAAGTCATTATCATCGGCCGTGGCGGCAGCTG
GTAATTCCAGCTTGGTAGATGGGCAATCTAGTAAGGGTCTCTCGAGTGCA
GGATCGAGCTCGAGCGGCCATGCGAAGACGACGGGCAGCGGTCGAGAATC
GAGCGGCGGCGGCGGCGGCAGCAGCACCAACAATAGGGGTAGGGCTGCTG
CCAAAGCCTCGAGTAGCAAAAACAGTGGTGGTAGCAGTAGCAATAGCAAG
AGTAGTTCCACAACCGCTGTCGCGAAGCCTTCCGCTATTCTGTCGAAACC
CAAGGATAACAACGCAACTGCTGGCCTCGTCGTCTCGATGATGGGTGCGA
GTGGAGGACCCACAGATTCTCCCCGCAGCAGTACCGGCAGCGGCGGTGGC
GGGGGTCGAGGGAGCAGTCGCTCAAAGGGCAGCGGCGGTGGAAAGGGCCG
ATCGAGTGGGAAATCTGCCGGCGGCGGTCACTGACTATTCAAGCAGAAAC
CTAAGCGGGATGCTCGCGTTGGCACCATTGAGAAGGACCCGGACTACAAG
TCGTTCTGCGCGGCGCTGGCAAAACCCACGACGATGCTGCCTGGTGCTGA
CGTTCAAGCGGACATTAAAGAATCCGAGGGCAAAGAAGACCCCAAGCCGT
CCAATGCACTCCTGGACTTCCTCAAGGAGCGAGGAGCGAAGCGAATGCGT
GACAGCCAGCGCGCTGTGGTCGTCGGTAGCAGCGGTGGTGGCAGCGGCAG
CCGACGAAGCGGCGGGACCTCAACCAGCAGCCGGTCGGGAGGAACAGGAG
GGGGTGCGTCTGGCAGTCGTTCGTCCGGCGGCGTCGCCAGCAGTAGTGCA
TCTATGCCCACCGAAAACTCGAGCACGCCGTCTGACACCGCTCCGCGAGC
CCCGGTGACAGACCCCGGTAGTAAGGCGGCGAAGCCGAAAGGTGCCGAAA
AGGAAGGGCGAGCAGGAGGGGGCGGGAAGGCTGGCTTGCGCTCGAACACG
CCTCCCCCGTCATCTACCCAAAAACTATCCGGCGGCTCCAAGTCATTATC
ATCGGCCGTGGCGGCAGCTGGTAATTCCAGCTTGGTAGATGGGCAATCTA
GTAAGGGTCTCTCGAGTGCAGGATCGAGCTCGAGCGGCCATGCGAAGACG
ACGGGCAGCGGTCGAGAATCGAGCGGCGGCGGCGGCGGCAGCAGCACCAA
CAATAGGGGTAGGGCTGCTGCCAAAGCCTCGAGTAGCAAAAACAGTGGTG
GTAGCAGTAGCAATAGCAAGAGTAGTTCCACAACCGCTGTCGCGAAGCCT
TCCGCTATTCTGTCGAAACCCAAGGATAACAACGCAACTGCTGGCCTCGT
CGTCTCGATGATGGGTGCGAGTGGAGGACCCACAGATTCTCCCCGCAGCA
GTACCGGCAGCGGCGGTGGCGGGGGTCGAGGGAGCAGTCGCTCAAAGGGC
AGCGGCGGTGGAAAGGGCCGATCGAGTGGGAAATCTGCCGGCGGCGGTCA
CTGA
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