prot_H-paniculata_contig394.10242.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig394.10242.1
Unique Nameprot_H-paniculata_contig394.10242.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length484
Homology
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 8.010e-82
Identity = 149/228 (65.35%), Postives = 172/228 (75.44%), Query Frame = 0
Query:   16 KPASKTKNAKSAPPPLKVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFV-VAKPDKTTDKNGALT---------------PVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKERGAKRMRDSQRAVVVGSS 227
            KP SK K+A+S+P  LKVVVRRLPH MKEE+F+EA+  AA++AGMG RGGSWDL++F  GKMSKKRGRVTGTAYL IDR RG  A DLSL KLRAA+ AS+     A+P  ++ K G+                 P VEAAPFQKLFKQKPKRD RVGTIEKD  YK+FCAAL  P   LP ADVQADI+ESEGKE+PKP NALLDFL+ERGA+R+RDSQRA  +GSS
Sbjct:   11 KPPSKAKSARSSPSLLKVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANA-DLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSS 237          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.300e-24
Identity = 76/210 (36.19%), Postives = 110/210 (52.38%), Query Frame = 0
Query:   22 KNAKSAPP-PLKVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRG---GVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPK-----------PSNALLDFLKERGAKRMR 216
            K A++ PP P+K+VVRRL      E F   +   AAEA    R  ++ +++++ GK+SKKRG++TG  YL ++R  G     A D             +    A PD       A  P+VE AP+Q++F+ KP+RD   GT E+DPDY++FCAAL +P   LP ADVQ D + +                  P  AL+ +++ER A R R
Sbjct:   53 KEARAPPPAPIKIVVRRLSPYFTPEDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAGVTPAAAVDAVAXXXXXXXXXFDTHARADPD-------AARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQRAAXXXXXXXXXXXXXXXXGAPVAALVQYIRERRAARAR 255          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 2.980e-13
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 0
Query:   32 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKM-SKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 210
            KVV+R++PHD+ EE     +  A   +    R   W    F  GK+    R    G  YL  D  +    A   + +L+ A + S++             G +T  V+ APFQK+ ++K +RD +VGTIEKDP+Y +F   LAKP   LP AD+  D K+    E  KP  AL+ +L ER
Sbjct:  114 KVVIRQIPHDVDEETVYARILDAHDVS----RSHIW---RFVPGKVRGNNRPPYPGRLYL--DFKKDTEXATSVVAQLKGAEITSSK-------------GTVTLDVDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAE--KPVAALVQYLNER 269          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 5.590e-13
Identity = 64/179 (35.75%), Postives = 92/179 (51.40%), Query Frame = 0
Query:   32 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 210
            KV+VR +PH M  ++ LE +     +A    R   W    F  GK+ +   RV     L +D  +    A   + KL   +++          K T K       V+ APFQK+ ++K ++D ++GTI++DPD+ +F   LAKP   LP ADV AD KESEG E  KP  AL+ +L ER
Sbjct:  100 KVLVRDIPHTMDLDKMLEVL-----DANGVARDSVW---RFVPGKV-RGNNRVPRPGRLYLDFKKETELAKTVITKLDGYVLSDV--------KDTPKLQ-----VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: K3XC97_GLOUD (Smg4_UPF3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC97_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 3.530e-12
Identity = 66/180 (36.67%), Postives = 88/180 (48.89%), Query Frame = 0
Query:   32 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKM-SKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 210
            KVVVR +PH   E+        A  EA    R   W    F  GK+    R   TG  YL + +          L + R  I A N  V+   D T D    L   VE AP+QK+ + K ++DA+VGTI++DP+Y +F   LAKP   LP A+V AD  E +  E  KP  AL+ ++ ER
Sbjct:   95 KVVVRNIPHTTDEDAIW-----ALVEAHGVTRESLW---RFVPGKVRGNNRQPTTGRMYLDLKK---------DLEQARRLIAALNGHVL---DVTADPPARLE--VEFAPYQKIPRDKQRKDAKVGTIDRDPEYLAFLEELAKPKEKLPSAEVVADTAEVDVAE--KPVAALVKYMNER 250          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: W2PRS1_PHYPN (Smg4_UPF3 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PRS1_PHYPN)

HSP 1 Score: 74.7 bits (182), Expect = 1.040e-10
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  125 KTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 210
            +T DK+G     VE APFQK+ ++K ++DA+VGTI++DP+Y +F   LAKP   LP A+   DI E E  E  KP  AL+ +L ER
Sbjct:  160 ETKDKDGVKPLDVEFAPFQKVPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDIAEGETVE--KPVAALVKYLNER 243          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: UPI0013901B14 (regulator of nonsense transcripts 3B n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901B14)

HSP 1 Score: 73.2 bits (178), Expect = 3.910e-10
Identity = 64/202 (31.68%), Postives = 95/202 (47.03%), Query Frame = 0
Query:    8 GKKSTSKGKPASKTKNAKSAPPPLKVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVT-GTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLK 208
            GK  T KGK   KTK  K+     KVV+RRLP  +KEE+  E +                D  +F  G+MS   G V    AY+              ++K R     S+ F         +K      VVE AP+Q + ++K ++DA+ GTI++D DY+SF  +L + T  LP  +   +  E+  +++ K S  LL+FLK
Sbjct:    2 GKTETEKGKSPIKTKRDKAFFQ-TKVVIRRLPPSLKEEELKEYLGDLPEH----------DFFYFVDGQMSF--GPVLFSRAYINFKN-------QEDIIKFRDQFDGSSFF--------DNKGNEYPAVVEYAPYQGVPRKKNRKDAKCGTIDEDKDYQSFLQSLEEETEPLPSVESHLEEIEARKEDNSKKSTPLLEFLK 175          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A3M6VSA1_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSA1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.120e-10
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 0
Query:   32 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLI-HFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPV-VEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 210
            K+VVR +P    EE+  E +          G G   ++I  F  G+  +K  R    A L +D  +        +  L   +   N        +TTD    + P+ VE APFQK+ ++K ++DA+VGTI++DP+Y +F   LAKP   LP A+   D+ E E  E  KP  AL+ +L ER
Sbjct:   77 KLVVRNIPPTTSEEEVREMLK---------GYGIGHEVIWRFVPGRNRRKNNREPIPARLYLDLKKQPEKIKTLIAALHGQLFCFNV------KETTD----IKPLEVEFAPFQKIPREKQRKDAKVGTIDRDPEYVAFLNELAKPKDKLPSAEPVVDMAEGETVE--KPVAALVKYLNER 236          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A329S293_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S293_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.360e-10
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0
Query:  125 KTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPSNALLDFLKER 210
            +T DK GA    VE APFQK+ ++K ++DA+VGTI++DP+Y +F   LAKP   LP A+   D+ E E  E  K   AL+ +L ER
Sbjct:  160 ETKDKEGAKPLDVEFAPFQKIPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDMAEGETVE--KTVAALVKYLNER 243          
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Match: A0A0D3FW67_9ORYZ (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3FW67_9ORYZ)

HSP 1 Score: 72.4 bits (176), Expect = 8.290e-10
Identity = 66/196 (33.67%), Postives = 98/196 (50.00%), Query Frame = 0
Query:   32 KVVVRRLPHDMKEEQFLEAVTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVAADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKPKRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESE----GKEDPKPSNALLDFLKERGAKRMRDSQRAVV 223
            KVV+RRLP  + ++  +E V     +A  GGR   +D   F  G  S+K  R +   YL   +G   V          A +   + FV        +K      +VE AP Q++ K   K+DAR GTI KDP+Y  F  +++KP   LP A++Q + KE+E    GKE P  +  ++   ++R AK M  +Q+AVV
Sbjct:   16 KVVLRRLPPAIAQQAVVEQV-----DARFGGR---YDWSCFRPGNASQKNHRYS-RLYLNF-KGPEDVVEF-------AEVFNGHVFV-------NEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSM--AQQAVV 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig394.10242.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCG9_ECTSI8.010e-8265.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7E8_9STRA3.300e-2436.19Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A2D4CDX7_PYTIN2.980e-1335.00Smg4_UPF3 domain-containing protein n=1 Tax=Pythiu... [more]
A0A8K1FA17_PYTOL5.590e-1335.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XC97_GLOUD3.530e-1236.67Smg4_UPF3 domain-containing protein n=1 Tax=Globis... [more]
W2PRS1_PHYPN1.040e-1047.67Smg4_UPF3 domain-containing protein n=8 Tax=Phytop... [more]
UPI0013901B143.910e-1031.68regulator of nonsense transcripts 3B n=1 Tax=Nemat... [more]
A0A3M6VSA1_9STRA7.120e-1033.15Smg4_UPF3 domain-containing protein n=2 Tax=Perono... [more]
A0A329S293_9STRA7.360e-1046.51Smg4_UPF3 domain-containing protein n=2 Tax=Phytop... [more]
A0A0D3FW67_9ORYZ8.290e-1033.67Uncharacterized protein n=1 Tax=Oryza barthii TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 23..96
e-value: 9.0E-5
score: 25.0
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 31..210
e-value: 6.3E-23
score: 81.7
NoneNo IPR availablePANTHERPTHR13112:SF0FI21285P1coord: 29..467
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 29..467

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig394contigH-paniculata_contig394:18452..23927 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig394.10242.1mRNA_H-paniculata_contig394.10242.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig394 17690..24009 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig394.10242.1 ID=prot_H-paniculata_contig394.10242.1|Name=mRNA_H-paniculata_contig394.10242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=484bp
MVSTEVKGKKSTSKGKPASKTKNAKSAPPPLKVVVRRLPHDMKEEQFLEA
VTPAAAEAGMGGRGGSWDLIHFASGKMSKKRGRVTGTAYLRIDRGRGGVA
ADLSLMKLRAAIVASNEFVVAKPDKTTDKNGALTPVVEAAPFQKLFKQKP
KRDARVGTIEKDPDYKSFCAALAKPTTMLPGADVQADIKESEGKEDPKPS
NALLDFLKERGAKRMRDSQRAVVVGSSGGGSGSRRSGGTSTSSRSGGTGG
GASGSRSSGGVASSSASMPTENSSTPSDTAPRAPVTDPGSKAAKPKGAEK
EGRAGGGGKAGLRSNTPPPSSTQKLSGGSKSLSSAVAAAGNSSLVDGQSS
KGLSSAGSSSSGHAKTTGSGRESSGGGGGSSTNNRGRAAAKASSSKNSGG
SSSNSKSSSTTAVAKPSAILSKPKDNNATAGLVVSMMGASGGPTDSPRSS
TGSGGGGGRGSSRSKGSGGGKGRSSGKSAGGGH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR005120UPF3_dom
IPR039722Upf3