mRNA_H-paniculata_contig3939.10237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3939.10237.1
Unique NamemRNA_H-paniculata_contig3939.10237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3939.10237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3939contigH-paniculata_contig3939:1904..8126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size944
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3939.10237.1prot_H-paniculata_contig3939.10237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3939 2186..7683 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.3050053-UTR-H-paniculata_contig3939:1903..21851622930207.3050053-UTR-H-paniculata_contig3939:1903..2185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3939 1904..2185 -
1691481190.7891538-UTR-H-paniculata_contig3939:1903..21851691481190.7891538-UTR-H-paniculata_contig3939:1903..2185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3939 1904..2185 -
1622930207.3487644-UTR-H-paniculata_contig3939:7683..81261622930207.3487644-UTR-H-paniculata_contig3939:7683..8126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3939 7684..8126 -
1691481190.8291342-UTR-H-paniculata_contig3939:7683..81261691481190.8291342-UTR-H-paniculata_contig3939:7683..8126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3939 7684..8126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.320903-CDS-H-paniculata_contig3939:2185..22031622930207.320903-CDS-H-paniculata_contig3939:2185..2203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3939 2186..2203 -
1691481190.8062747-CDS-H-paniculata_contig3939:2185..22031691481190.8062747-CDS-H-paniculata_contig3939:2185..2203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3939 2186..2203 -
1622930207.3347216-CDS-H-paniculata_contig3939:7482..76831622930207.3347216-CDS-H-paniculata_contig3939:7482..7683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3939 7483..7683 -
1691481190.818215-CDS-H-paniculata_contig3939:7482..76831691481190.818215-CDS-H-paniculata_contig3939:7482..7683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3939 7483..7683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3939.10237.1

>prot_H-paniculata_contig3939.10237.1 ID=prot_H-paniculata_contig3939.10237.1|Name=mRNA_H-paniculata_contig3939.10237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MDEDALFAEFLGEIKSVAVAPVAEVGETVDDDAASVGEIEAAGETGAEGK
AEGANGADTNKRKGVIALVCMG*
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mRNA from alignment at H-paniculata_contig3939:1904..8126-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3939.10237.1 ID=mRNA_H-paniculata_contig3939.10237.1|Name=mRNA_H-paniculata_contig3939.10237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6223bp|location=Sequence derived from alignment at H-paniculata_contig3939:1904..8126- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGATTGATCACGGGATACAGTTGCTCCCTACTTCGCTGTGGTGAAAG
CTCTCTCTCTCTCTCTCTGGTGATTCACTCACGGGCTTCCATTTCTGTGC
GATCTCCTTTAGTTGAGAATCAAAGTCGTAAGTGTTGGCGGAAATACACG
GCAAAAAGAGAAGAGAGGTATTCCCTCACTATCATCATCCTTCGTGTTTT
CGACTGACAGCACTACTGCATAATCCTACTGTGTGTAGTACTGTACGGCA
CTACAAGGGCGTAGCAGGCAGCCAGGAGAAGGAGAGCGAGAGAGACATAC
AGGAAGCCAAACTGCATATTCAGGCATCTTCGGTGTGGGTTTGAATCAAG
TGTCCTAAATCGCGGAAGCACAGTGCTGTCAAGGTTGTTTTTTATTTTCT
CCTCTTGCCCCAGCTATCGACAGGCACTGGTGAGGCGGGCAGCATGGACG
AGGATGCGCTGTTTGCGGAGTTCTTGGGAGAGATCAAAAGCGTTGCCGTT
GCTCCCGTAGCCGAGGTAGGCGAGACTGTCGATGATGATGCAGCATCTGT
TGGGGAGATCGAGGCGGCGGGAGAAACTGGCGCAGAAGGGAAGGCGGAGG
GGGCAAACGGGGCAGACACAAACAAGCGAAAGGGAGTCATTGCGGTAAGG
CCTTGTCCACCGCTCTATGTGTCTCTCCTTTGAAAGCATGATAACACGGT
AAGACACACAATCTGACGTAGGCGAACGTCATGCCCTTGTGAGGGCAGCC
GGAGAACAGCAGGACCCTCCTAAATGTGACACGATTCAGAAGTAATGTAC
CAATTGTTGCGCACGAGCACAGTTCGTACCACTGTCAAACTGTCAGCTCT
GAAGCACACATGGTGTCTTCTGTTTTATGTCTAGTAGGCGCCCCCACCTG
AGCTCCCGGTCTGATATGCGATACAGTGGGTGTACGGATTTAAAAGAGGG
TGGTAACAGCCGGAAAACCCTATCTTACATCCTCATCCTCTCTTGCTTGA
TTCAAGAGAGAGAAAACTGAGCTGGAAGAAGCTTGTGTGCATCTCGGCCA
AAAAAAGTGTTAACAATAAACGACAACATTTCGTAGTCGTGTGCTGAAGT
CGGCTTGATAGAAACCCAGATGGTGTCAAGTAGATGATGTACAGCACATG
TCATTTTCCACTTGCCTGCTCGATTTAAGAGAGGTGTGGCCTGCGCACTC
CAAAACCTTTCTTAAATCTTGATTTCTCTTGAATAAATCGCACCTAAACC
TGTACACCTACCTCTGTATTTGGTACATTGTATACTGAATAGAGTACCTG
CGACACTAGGTAGCCCTAGATAAGGGACCCCAAGACTGCAGCAGTTCAAT
CCGGCCCACATGACGTTGCAACCATGCCGCGCGCGGCGGGAGTAGCATGT
ACACGACAGCTTTAGGTCATGAGAAAAGTGTAGTTCTGCTGTGTGCAGTG
CTTGAGATTTACGCTCTCGTTTGTCCTATTTCCTCGCAATTAATTTCAGT
AGTATGTACTACACAGAACACGCCAACGTTCAACACATTTTAAATTAGTC
ATATACCATATCAGGATGGCGCGTAACTCATAAGCTCCCACGGGACTGAA
CTGGTCCTCTATAACGTGGCGGTACCTTATATAGGAAATCCTCTAAGGTA
CCGGTCCGATATTAGTTTCCTTATGGAACCTGGCGCTATGGGACCTACCT
TACGTAGGGTCACCTACTGACAATATTAAAAATAACTGGCAAACTCGCCC
TCATTTTGTTGTTACATCGAGTAACCGCCGGTGTGTGCACATGTGTCGAG
GTTCCTGGGAGAAGCGGTGAGGACAGTAGATAGTAGTTAGAACGGATGAG
CGGATGAACTTGCTTCAATATGCGTAGAAGATCTACTTGTAACCCAGCTC
CGAAGAGAATGTTCCTGAACGTACAGTCCCAAGAGTGTCGGCATTTGTAC
ATTGAGGACCGTTTGACAAGCGGGACGTAAGCATATACCGTAATGAGCGT
ATTACATGAACACAAAAAACGTTATCTACCAAACGCCAAATCCAGCCCAG
AAAGAAAATGAAGCTGCCCTTACCTCCGCATCGCAAGGCGATTGTAACGC
ACACTTCGCATATTTAGGCAGTACATAACACAGAACATATTGACGGCACT
GTGGTACAGACAGGCCAAAGTTCAGTTATTACGTACCTGTAGTGCTTTTA
CACTGTATACAGATCAAACAAATTCCTGTGATGCACATTTTGTCCTACAT
GTCATTCGGTATCGATCTTAGCCAACAAGAGGTACTACAGAGCAGAGGCC
AGGGCTACCTCGAGCACTCACGGCACACGTCGTGGCGATTTAATTGTGGG
TGGAAAATGGGGGCTGAAGTGTGCGTTTCTTGAAGGAAAGAGAAAAACTG
ACCCAGACTGTCGGCTCGCAAGCGTGACAGTGCGTTGGTAAGTGAAACTC
AGTGCTACTCAGGGTATAATCCCCAATCACGTGCCGGGCACATTGCAGCT
CAGCGACATGCTGACGAAGTGGCTGCCTCGTATTCTGCACAGATGAGTTG
GAATTCTTCATGGCCCATATTTTTCAGCAGAAAATTCAATGTGCGTTCTG
AAGAATGTATGTCAGATTCTCCTCGTTATTGATGTTGGCTAGCCCAGCGA
ATGAAAACTTGGGCTCGGAAATAGCACCGCGGTCAGGAGTTCGTATGTTA
CTCTGAACTGCTCCGCCATGAGCATGTTTCCCCCGGAGCGAGGCTGATTC
CCTGAGCCCACGGCAGACGGATGCCCCACAACGCATTAAGTTGATCCCAT
CTCCCGCTGTGGATAACCAAGACTCTACTTTCCACCGCGCGAATATCTGA
TGGTGACATCTGAATACCTGGGAATAGCACGTTGCGGCGATCTAGACGTT
TAGATTGATGGTCTTCTCTTTTTTTTCTTTTTTCCTTCTTATTTCACGTA
ACTATTTAGTGGTTGGATATTAGCTCTAATACTCTGTTGTGTAGAATACG
AGGCAACCCCTTCGATATCATGTCGCTGGGTTGCAATGTACCCGGTACGT
GATCGGGGATAATTCTCCCCTGCTCGATCCAGCACTTCAGGAGCTAGAAC
CGCTACAACGTGTATCTCGTTCTCTCTCTTGCTACTCCCGTGGTGACGAA
AAACAGCCCGCTCTGCCTGTCAGTAAAAAGCTCGAAAGTCAGGTACAGTG
CTCCCAGCTCCCTCAACATCCCCAGCTGTTACATTCCCTCCTTGCTGCAT
TGAACCATTGTTTCAACTTCAGCCTCGGCTGATGACCGCGTGATGATATT
CTGCGTTTATATGAAGTTGATCGGCCCTCCCGATAGCATAAATAGCGATT
CACTCGCTGATTTTCCCGAAGAAGGGTTTGCCTTGCCGTGAGTTGCGTCG
CAGAAAACCCTCAGCTTGCTGAATTCCCCTTTCTGTACGTAATGACGAGG
TCCGGTCTCCCCCAGAATTAGCTTTGAGCTCGCTTGGTGCTTGCCATGTG
CACTCTTGCTGGCCTGGAGGCGCTCCGACTAGTCGACAAACTATGAAACA
GCGATCGTAACGAGTTCACTGCGCTACATTCAGCAGGGCCTGTACCAGGC
TTGGGTAATTCCTTGTCTCGGCTGCATCCAAGTAGATTCTCCTTGCGATT
CGTTCGGGACCTTTCCTTCCAGACCAGGTGTAGCAACTGCGTTACAGTTG
GACATCCCGAACCTCTCCAGAATATCTGATGCGTATTTACGTTTCGATAA
TATTGATGGCTCCTGCCTCCTCATCTTTTAGAATCTCCGTTCCCAGCAAC
CTCGATACCTGGCCCTGCGATGCCATCTGGAACGTGTCGTGCAGTAACTT
CTGCAGAATGGCCAGCAGTTCTGCTGATGTGGCTGTCAATACGATGTTGT
CGACGTACACTGATAATATCTTGTAGTTTCGCCACTGCCGTATGTATACA
CATGGGTCAGATGCCATAGATTTGAATGCTAGTTGGTGAGGTCGGTCTCG
ATCCTTCGGTTTCGGATTGAAGCGCTTTGCCCTAGGCCATACAGGGACTT
TTTCAGTAGTTAAACAAGCGTCAACCCGGTCTTGGGGTCCCACTTTTGAT
GGCCTAGTGCCTGTGTCGCAAAGATCTCTTCCTTTACGTTGTGTTGAAGA
AACGCTGTCACCAGATCCATCTGTATCACGTCCTAGTTATGTGCTGCTGC
AAGGACTCTTTGTAGCCGGTAACTGAGCAGTCTGCATGTTGGTGCAAACG
TTCCCCGCAGAAGGTCTTACCCATGGTCCTGAGAATACCCTCTGACGCAA
ATTCTGGCCTTGACCCTCCCGTCTGCGTTGACCTGGTTACCCACCGAGTA
CTGAGGACATATGAGTCGGGTGGAACGGGTTCTATTGGCACCAGTATCGA
TACGTCGTGCTGCTGATGACTAGCCAGCTCCTTCTCCTCTGCCGCTCTGC
ATTCAGCTGCCAACTGTGAGGCCGCTGCTTCATGGTGGCTTGAAGGTATC
GGGATGCTTGATGGTGTCACTAGTTTACCTGCTGTCCATGCTTGTGCGGT
AGAGTTCTCGGTGAAATCCGTAAACTTGCTGTTGATTGAGTATGGCCTCG
ACTCTCCACCGTCGAATCCCTCGCCTACTGCTCCTTCCCTTCCTGCTGAT
TGAGTTGGTGATATCTACAAATCAAACATTACGGGATTCCAGGACTGGTG
CCGTGGATGGCTTGTAAACTCGATATATTTTTGTCACCTCCGTCGCCGAG
CAGCCGCCCTCCCAAGCCTTCCCCTGCTTGTTGGTATGTGTTTTCGATGT
GAACGAATGCCCGAGCGCCGATAGCTCGAAGGAATGATAGATCCACCGTT
TCGTCGTACAGTTTGAAAAGAATGGCATATCGTAGTCAAGTGTCTTGTGG
AGTAACCTGTTGCTCAATCAGATCGACGTTGCTACGATCTCGTTCCATAG
ATACCGAGGTAAAAGCCCGGGTGTCGTGGAGCATGCATGTTGTCATTTGC
ATGATTGTCCTCCTGTATCTTTGCTGGAGAGTGTAGGGCATGAATTCTTG
GACTAACCCGGTGGTTTTGCAGGACTCCCTCCCGTAGCTGGAGATGAACT
CCGTGCTTCTGTCTGAACGCAATCGCTATGATCTCCAGTCATACGGAATC
ATTAGATCCTTGAAGTCGAAGATGGTCCTGAGTGTCTCGTCCTTCTTCCG
GAGGACGTATACCGCCGTGAATCTTGAGTGTTGGTCAGTGAACTTACACA
GTGATCCTGTTATCTTGTGGTCTGCTGTTTTCGGGTGGTTCTGTTGTGGC
GACTCTATATGTACCCCAGGGTGGAACCACAGTCGTAAAGTCCACTCCTA
GCGCTTCGTTTGCTCTGCCCGCCTTCGTAATCTCCTCGCTTGGGTGTCCC
AGTCTCTTCTGCCACATTTCCGTGTCCGTCGTAGTCCACATCGCCGAAGC
TGTGCCGCCAGTCACTGGTAATACTGTACTTGCCGCAGCTGCTCGGTGAT
ATTTATTGGCCTCCTTCCTTATGTCTATTTCCAAGTCGAGGATAAATAAA
TCCGTTCAAGCAAGGTTGAGGAATGCCCTGGCGTTGAAATGAGAGTTTTC
TGAGATGACTGCTCCCACTCCTTACTTCCTCGCACATGGGGATGAAAATA
GATGACGACCCATCTAGAAACCGTTGTGATGTTCATGTTGAATTCCCGTG
GGTTGCCGAGATGGTCTCTGGCGATGACAGTAAGTCCGCCATTACCGGTG
TCATACCGTACGCCTCGACCCGTAGTTACTACCATCGAAGGGTTCAGGCA
GAGAAGTAGTGCCACTTTCAGGGATGCCGTAAAGTCGATGAAATGCTGTG
TTGCTCCACTGTCTACTGTCATGTAAAGCTTGAGCTTCAGCTCCCTCTGC
GCCCCTGGTTCCTTCGTTTGTAGCTGGTGTGCATGGGCTGATGACTGAAG
AGCGCGGTAGTTGGTGCAGCCGGCGGCATGATCGGGTACTACACCGTAGC
AGCCAATGTAGGTGTTGTCCGGGTTGGACAGTAATTGAGGCCGGAAGTTG
ATAAATGGCTTAGAATGATGCCGCTTGTTTTCTTTTGTCTGTCTGGTGTT
TGCGCTCCTGTTGTAGGTTTTTGCCCATCCGATGCTGCCCATTATTCCGC
CCGTAGTTGTGTCCTGCAGGTTGTGTCGTCGTGTAGGTGTGTCTTGTGTA
GAGAGCATCACGTCCCTTTCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3939:1904..8126-

>mRNA_H-paniculata_contig3939.10237.1 ID=mRNA_H-paniculata_contig3939.10237.1|Name=mRNA_H-paniculata_contig3939.10237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig3939:1904..8126- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAGGATGCGCTGTTTGCGGAGTTCTTGGGAGAGATCAAAAGCGT
TGCCGTTGCTCCCGTAGCCGAGGTAGGCGAGACTGTCGATGATGATGCAG
CATCTGTTGGGGAGATCGAGGCGGCGGGAGAAACTGGCGCAGAAGGGAAG
GCGGAGGGGGCAAACGGGGCAGACACAAACAAGCGAAAGGGAGTCATTGC
GATGGACGAGGATGCGCTGTTTGCGGAGTTCTTGGGAGAGATCAAAAGCG
TTGCCGTTGCTCCCGTAGCCGAGGTAGGCGAGACTGTCGATGATGATGCA
GCATCTGTTGGGGAGATCGAGGCGGCGGGAGAAACTGGCGCAGAAGGGAA
GGCGGAGGGGGCAAACGGGGCAGACACAAACAAGCGAAAGGGAGTCATTG
CGCTGGTGTGCATGGGCTGACTGGTGTGCATGGGCTGA
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