mRNA_H-paniculata_contig39381.10235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39381.10235.1
Unique NamemRNA_H-paniculata_contig39381.10235.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39381.10235.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.410e-7
Identity = 40/101 (39.60%), Postives = 51/101 (50.50%), Query Frame = 1 
Query:  313 RRVKPRAHYKQSTCGKLLGQLRELYDPKDSDEFDPGLDLMVNFRARFRTPYDCFLNMMDEIEGVYGKKPWFETGKSDVSRRPGVPIRLKVLGVLQVLGRGN 615
            R  +PR  Y +S  G  L Q+  L   + S            FRA FR PY+ FL  ++ +      +P F   + DV  R  VP+ LKVLGVLQVLGRGN
Sbjct:  131 RESRPRPDYNKSAWGLRLAQMESL---RCSHNLAQHSREARAFRADFRVPYEFFLEFVEMV------RPVFPAREHDVCGRLCVPLELKVLGVLQVLGRGN 222
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BLAST of mRNA_H-paniculata_contig39381.10235.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.240e-6
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  412 DPGLDLMVNFRARFRTPYDCFLNMMDEIEGVYGKKPWFETGKSDVSRRPG---VPIRLKVLGVLQVLGRGN 615
            DP       FR RFR PY  FL+++DE++   GK P F T + ++  R     +P+ +KVL VL++LGRGN
Sbjct:   77 DPSTREAKQFRRRFRVPYPFFLSLVDEVKA--GKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGN 145
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BLAST of mRNA_H-paniculata_contig39381.10235.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.620e-6
Identity = 38/101 (37.62%), Postives = 49/101 (48.51%), Query Frame = 1 
Query:  313 RRVKPRAHYKQSTCGKLLGQLRELYDPKDSDEFDPGLDLMVNFRARFRTPYDCFLNMMDEIEGVYGKKPWFETGKSDVSRRPGVPIRLKVLGVLQVLGRGN 615
            R  + R  Y  S  G  L  L  L   + +    P       FR+ FR P++ F + +D +  V      F T   DV+ R  VP+ LKVLGVLQVLGRGN
Sbjct:   33 RETRERPDYSSSAWGVRLANLESL---RIAGRLVPSSREAKAFRSDFRVPHEFFRHFVDLVRTV------FPTATRDVAGRQCVPLELKVLGVLQVLGRGN 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39381.10235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0H2_9PHAE7.410e-739.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE1.240e-642.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE5.620e-637.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39381contigH-paniculata_contig39381:393..1655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size617
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.2109592-CDS-H-paniculata_contig39381:394..4301622930207.2109592-CDS-H-paniculata_contig39381:394..430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39381 395..430 -
1691481190.7563555-CDS-H-paniculata_contig39381:394..4301691481190.7563555-CDS-H-paniculata_contig39381:394..430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39381 395..430 -
1622930207.2225094-CDS-H-paniculata_contig39381:1076..16551622930207.2225094-CDS-H-paniculata_contig39381:1076..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39381 1077..1655 -
1691481190.7679808-CDS-H-paniculata_contig39381:1076..16551691481190.7679808-CDS-H-paniculata_contig39381:1076..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39381 1077..1655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39381.10235.1prot_H-paniculata_contig39381.10235.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39381 395..1655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39381.10235.1

>prot_H-paniculata_contig39381.10235.1 ID=prot_H-paniculata_contig39381.10235.1|Name=mRNA_H-paniculata_contig39381.10235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
TVSCEIKAGRKRCFITHAFPIHTKPAMDMVDIDDLDIDDGNTASVGDGDE
EMMAAGQAMLHRMHVATLAANACVDDVQAEEGPAEDGREMDGMFADVPQQ
ERLMRRVKPRAHYKQSTCGKLLGQLRELYDPKDSDEFDPGLDLMVNFRAR
FRTPYDCFLNMMDEIEGVYGKKPWFETGKSDVSRRPGVPIRLKVLGVLQV
LGRGN
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mRNA from alignment at H-paniculata_contig39381:393..1655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39381.10235.1 ID=mRNA_H-paniculata_contig39381.10235.1|Name=mRNA_H-paniculata_contig39381.10235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1263bp|location=Sequence derived from alignment at H-paniculata_contig39381:393..1655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGTTTCCTGTGAGATCAAAGCTGGCCGGAAAAGGTGTTTCATCACGCA
CGCTTTCCCAATACACACTAAACCCGCTATGGATATGGTGGATATAGACG
ATCTGGATATAGACGATGGGAATACAGCATCTGTAGGTGATGGCGACGAG
GAGATGATGGCTGCGGGGCAAGCCATGCTCCACCGAATGCATGTGGCGAC
ACTGGCAGCAAACGCGTGCGTAGATGATGTGCAGGCGGAAGAGGGGCCAG
CGGAGGATGGTAGGGAGATGGATGGGATGTTTGCCGATGTTCCACAGCAG
GAGAGGCTAATGCGCAGGGTTAAACCTAGGGCCCATTACAAGCAGTCGAC
GTGTGGAAAGCTACTAGGGCAGCTGCGGGAGCTGTATGATCCGAAAGATA
GTGACGAGTTCGACCCTGGACTGGACCTCATGGTGAACTTTCGAGCTCGC
TTCCGCACCCCATACGACTGTTTCTTGAACATGATGGACGAGATCGAGGG
CGTCTATGGCAAGAAGCCATGGTTTGAAACGGGGAAGTCGGATGTCTCAA
GGCGCCCTGGTGTCCCCATCAGGCTAAAGGTATGCCCGTTATTGTTAAAG
TAGGTGCCAATAGCAGGTAGCATGTGCTGCGGGTGTGCGGGGGGGGGTAT
TGCCGTGGTGTAGTACAGTAGAGTAGGCCGTTCGTCGGCGGTCTTCGTAC
GAGGAGTACAGTACCGCCTATACTGTACTGACTGCTCTTTCCTGATTCAT
TCCCGTCCTGGCCGCCACTAATCATGCTCTCTGTACTCTTCTGTGTGCTG
AGTCTGTTGTTGCTGCTACTGATGTTTCCGCCGTTGACGTGACCACTTGT
TACTGTACAGTACGGTGAGTACTTGTTACTGTACGATGCCGTGAGTACTT
GTTCCTGCTGTACCGTTAAAACTTATTACTACTGTACTGGACGGCGGTCG
TCTGAATATAGGGTTGCTGCTGCTGCTGTTTCGACCCCTACAGTACTTGC
TACTGTACTGTACGGAGAGTACTTGTTACTGTACGGTACGGTGGTACAAG
TACCGTGTGTGTGTTTTGCCAGGACGAATGCTTTTGTGCTCCACCTAGCA
TCATGCGAGTCCCCACTAATGATTATCTAGATTGCTCTCCGCGTGTCGCC
TCCATGGAAAAGGAGGCTAATCTCCACGGGTTTTTCGCTCCGTGTACGCT
TGTCAACATTCCCCTTGTGCCGCAGGTCCTGGGGGTCTTGCAAGTGTTGG
GGAGAGGCAACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig39381:393..1655-

>mRNA_H-paniculata_contig39381.10235.1 ID=mRNA_H-paniculata_contig39381.10235.1|Name=mRNA_H-paniculata_contig39381.10235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig39381:393..1655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGTTTCCTGTGAGATCAAAGCTGGCCGGAAAAGGTGTTTCATCACGCA
CGCTTTCCCAATACACACTAAACCCGCTATGGATATGGTGGATATAGACG
ATCTGGATATAGACGATGGGAATACAGCATCTGTAGGTGATGGCGACGAG
GAGATGATGGCTGCGGGGCAAGCCATGCTCCACCGAATGCATGTGGCGAC
ACTGGCAGCAAACGCGTGCGTAGATGATGTGCAGGCGGAAGAGGGGCCAG
CGGAGGATGGTAGGGAGATGGATGGGATGTTTGCCGATGTTCCACAGCAG
GAGAGGCTAATGCGCAGGGTTAAACCTAGGGCCCATTACAAGCAGTCGAC
GTGTGGAAAGCTACTAGGGCAGCTGCGGGAGCTGTATGATCCGAAAGATA
GTGACGAGTTCGACCCTGGACTGGACCTCATGGTGAACTTTCGAGCTCGC
TTCCGCACCCCATACGACTGTTTCTTGAACATGATGGACGAGATCGAGGG
CGTCTATGGCAAGAAGCCATGGTTTGAAACGGGGAAGTCGGATGTCTCAA
GGCGCCCTGGTGTCCCCATCAGGCTAAAGACAGTTTCCTGTGAGATCAAA
GCTGGCCGGAAAAGGTGTTTCATCACGCACGCTTTCCCAATACACACTAA
ACCCGCTATGGATATGGTGGATATAGACGATCTGGATATAGACGATGGGA
ATACAGCATCTGTAGGTGATGGCGACGAGGAGATGATGGCTGCGGGGCAA
GCCATGCTCCACCGAATGCATGTGGCGACACTGGCAGCAAACGCGTGCGT
AGATGATGTGCAGGCGGAAGAGGGGCCAGCGGAGGATGGTAGGGAGATGG
ATGGGATGTTTGCCGATGTTCCACAGCAGGAGAGGCTAATGCGCAGGGTT
AAACCTAGGGCCCATTACAAGCAGTCGACGTGTGGAAAGCTACTAGGGCA
GCTGCGGGAGCTGTATGATCCGAAAGATAGTGACGAGTTCGACCCTGGAC
TGGACCTCATGGTGAACTTTCGAGCTCGCTTCCGCACCCCATACGACTGT
TTCTTGAACATGATGGACGAGATCGAGGGCGTCTATGGCAAGAAGCCATG
GTTTGAAACGGGGAAGTCGGATGTCTCAAGGCGCCCTGGTGTCCCCATCA
GGCTAAAGGTCCTGGGGGTCTTGCAAGTGTTGGGGAGAGGCAACGTCCTG
GGGGTCTTGCAAGTGTTGGGGAGAGGCAAC
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