mRNA_H-paniculata_contig39380.10234.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.820e-25 Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 662
++L+++VDDIL TG ++L + + T++F +TD+GE+ I G++V R+ G L +SQ YV ++L RF M A P +PG + +L K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q ++ A K G P
Sbjct: 51 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 207
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.980e-25 Identity = 63/200 (31.50%), Postives = 102/200 (51.00%), Query Frame = 3
Query: 63 DIDIWVAPKPKCLEPYHRQWAEEYGLYTDHLGSLCVQ*RKQRHIMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 662
D D++V P P A+ +G++ V +L+++VDDIL TG ++L + + T++F +TD+GE+ I G++V R+ G L +SQ YV ++L RF M A P +PG + +L K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q ++ A K G P
Sbjct: 98 DRDVYVRPAPGTS-------AKNSATGEPMVGNIIV--------ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 282
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE) HSP 1 Score: 107 bits (266), Expect = 3.390e-25 Identity = 53/150 (35.33%), Postives = 89/150 (59.33%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNS 641
++L+++VDDIL TG ++L + + T++F +TD+GE+ I G++V R+ G L +SQ YV ++L RF M A P +PG + +L +K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q L + + +S
Sbjct: 51 VILTVYVDDILITGRDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYTDQPQDQILGPTDMKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQFFLSSTREDS 200
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.070e-24 Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAG 656
I L+L+VDD+L G V+ + +F +TDLGE SL+ GME+ R++ L +SQ Y SIL RF MS + PT +PG ++ +LLD ++YQ +VGSL++ Q R+DI + Q AR M+ P++ H+VA K AG
Sbjct: 113 IYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAG 267
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.340e-24 Identity = 55/157 (35.03%), Postives = 88/157 (56.05%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 662
++L+++VDDIL TG ++L + + T++F +TD+GE+ I G+ V R+ G L +SQ YV ++L RF M A P +PG + +L K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q ++ A K G P
Sbjct: 51 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 207
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.360e-24 Identity = 53/147 (36.05%), Postives = 87/147 (59.18%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVK 632
++L+++VDDIL TG ++L + + T++F +TD+GE+ I G++V R+ G L +SQ YV ++L RF M A P +PG + +L K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q ++ A K
Sbjct: 180 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAK 326
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.120e-23 Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAG 656
I L+L+VDD+L G V+ + +F +TDLGE SL+ GME+ R++ L +SQ Y SIL RF +S + PT +PG ++ +LLD ++YQ +VGSL++ Q R+DI + Q AR M+ P++ H+VA K AG
Sbjct: 1342 IYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAG 1496
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.300e-23 Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 662
++L+++VDDIL TG ++L + + T++F +TD+GE+ I G++V R+ G L +SQ YV ++L RF M A P +PG + +L K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q ++ A K G P
Sbjct: 378 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 534
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.370e-23 Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAG 656
+ L+L+VDD+L G + ++ + T +F +TD+GE+ L+ GME+ R++ G L +SQ Y SIL RF MS PT +PG ++ +LL + YQ +VG LI+ Q R+DI + Q R M+ P++ H+VA K AG
Sbjct: 650 VYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAG 804
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.370e-23 Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 3
Query: 192 IMLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 662
++L+++VDDIL TG ++L + + T++F +TD+GE+ I G++V R+ G L +SQ YV ++L RF M A P +PG + +L K YQ+M GS+++ QCTRFD+ + A+Q ++ S P Q ++ A K G P
Sbjct: 534 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 690 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39380.10234.1 >prot_H-paniculata_contig39380.10234.1 ID=prot_H-paniculata_contig39380.10234.1|Name=mRNA_H-paniculata_contig39380.10234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKback to top mRNA from alignment at H-paniculata_contig39380:853..1517- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig39380.10234.1 ID=mRNA_H-paniculata_contig39380.10234.1|Name=mRNA_H-paniculata_contig39380.10234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=665bp|location=Sequence derived from alignment at H-paniculata_contig39380:853..1517- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig39380:853..1517- >mRNA_H-paniculata_contig39380.10234.1 ID=mRNA_H-paniculata_contig39380.10234.1|Name=mRNA_H-paniculata_contig39380.10234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig39380:853..1517- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |