prot_H-paniculata_contig39380.10234.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig39380.10234.1
Unique Nameprot_H-paniculata_contig39380.10234.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length157
Homology
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.580e-26
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 156
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G++V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L     K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q ++ A K       G P
Sbjct:   52 ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 207          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.860e-25
Identity = 53/149 (35.57%), Postives = 88/149 (59.06%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNS 149
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G++V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L    +K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q  L + + +S
Sbjct:   52 ILTVYVDDILITGRDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYTDQPQDQILGPTDMKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQFFLSSTREDS 200          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 5.210e-25
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    2 LSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAG 154
            L+L+VDD+L  G        V+ +   +F +TDLGE SL+ GME+ R++    L +SQ  Y  SIL RF MS + PT +PG  ++        +LLD    ++YQ +VGSL++  Q  R+DI +   Q AR M+ P++ H+VA K      AG
Sbjct:  115 LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAG 267          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.100e-25
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 156
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G++V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L     K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q ++ A K       G P
Sbjct:  127 ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 282          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.200e-24
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 156
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G+ V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L     K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q ++ A K       G P
Sbjct:   52 ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 207          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.240e-24
Identity = 53/146 (36.30%), Postives = 86/146 (58.90%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVK 146
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G++V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L     K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q ++ A K
Sbjct:  181 ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAK 326          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.440e-24
Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 0
Query:    2 LSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAG 154
            L+L+VDD+L  G   +    ++ + T +F +TD+GE+ L+ GME+ R++  G L +SQ  Y  SIL RF MS   PT +PG  ++        +LL     + YQ +VG LI+  Q  R+DI +   Q  R M+ P++ H+VA K      AG
Sbjct:  652 LTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAG 804          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.720e-24
Identity = 58/153 (37.91%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    2 LSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAG 154
            L+L+VDD+L  G        V+ +   +F +TDLGE SL+ GME+ R++    L +SQ  Y  SIL RF +S + PT +PG  ++        +LLD    ++YQ +VGSL++  Q  R+DI +   Q AR M+ P++ H+VA K      AG
Sbjct: 1344 LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAG 1496          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.840e-24
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 156
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G++V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L     K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q ++ A K       G P
Sbjct:  379 ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 534          
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.060e-24
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0
Query:    1 MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNKLTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVAAIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSSLFAGLP 156
            +L+++VDDIL TG  ++L    + + T++F +TD+GE+  I G++V R+   G L +SQ  YV ++L RF M  A P  +PG   +         +L     K YQ+M GS+++  QCTRFD+ + A+Q ++  S P Q ++ A K       G P
Sbjct:  535 ILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNP 690          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39380.10234.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAK0_9PHAE9.580e-2635.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRT7_9PHAE1.860e-2535.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE5.210e-2538.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGS8_9PHAE8.100e-2535.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUJ3_9PHAE1.200e-2435.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG29_9PHAE1.240e-2436.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE4.440e-2436.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE4.720e-2437.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF89_9PHAE5.840e-2435.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE6.060e-2435.26Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..81
e-value: 6.9E-11
score: 42.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..147
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 3..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39380contigH-paniculata_contig39380:853..1323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39380.10234.1mRNA_H-paniculata_contig39380.10234.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig39380 853..1517 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig39380.10234.1 ID=prot_H-paniculata_contig39380.10234.1|Name=mRNA_H-paniculata_contig39380.10234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MLSLFVDDILDTGPTEKLKMDVRNQFTNKFTITDLGEISLIHGMEVLRNK
LTGALQVSQHKYVLSILHRFNMSSATPTKSPGIKTDPGAASNVGSLLDVA
AIKEYQAMVGSLIFPTQCTRFDICFRAIQAARFMSAPTQRHLVAVKRNSS
LFAGLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like