mRNA_H-paniculata_contig39344.10227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39344.10227.1
Unique NamemRNA_H-paniculata_contig39344.10227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177USG4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177USG4_9BASI)

HSP 1 Score: 87.4 bits (215), Expect = 6.570e-18
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            PSTF +A+S E  + W  +M  +Y+ L++ GT    +PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:  308 PSTFAQALSREDKDEWKASMDDEYKSLIEMGTWELCHPPPGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGVDYDETFAPVARLSALRMMV 405
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BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A392PKJ6_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PKJ6_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 1.710e-17
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+T+ EA   EH   W  AM  + E L + GT    + P + KPI+S W+Y+ K   DG +   KVRLVA+G  Q++GLD+ DTF+P + ++T  IL+
Sbjct:    5 PNTYDEAYKSEH---WQSAMRAELEALAKNGTWKFVDLPSHVKPISSKWVYKGKHKSDGSIERYKVRLVAKGYNQIEGLDFLDTFSPVAKMSTVRILL 99
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177VSV6_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VSV6_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 2.310e-17
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF +A+S E  + W  +M  +Y  L++ GT    +PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:  573 PTTFAQALSREDRDEWKASMDDEYRSLIEMGTWELCHPPPGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGFTQVEGIDYDETFAPVARLSALRMMV 670
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177U3B2_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177U3B2_9BASI)

HSP 1 Score: 85.5 bits (210), Expect = 2.980e-17
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF EA++ E  + W  +M  +Y+ L++  T    +PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:   21 PATFAEALAREDRDEWKASMNDEYKSLIEMRTWELAHPPQGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGFSQVEGIDYDETFAPVARLSALRMMV 118
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177T2W4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177T2W4_9BASI)

HSP 1 Score: 85.5 bits (210), Expect = 3.040e-17
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF EA+S E    W  +M  +Y+ LV+  T    +PP   K I   W+Y+ K DP+G  T  K RLVA+G  QV+G+DYD+TFAP + ++   IL+
Sbjct:  133 PATFAEAMSREDRAEWQHSMNDEYKSLVEMKTWELCHPPPGRKLIGCKWVYKVKLDPEGRATRRKSRLVAQGFSQVEGIDYDETFAPVARLSALRILL 230
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177U3X5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177U3X5_9BASI)

HSP 1 Score: 85.5 bits (210), Expect = 3.160e-17
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF +A+S E  + W  +M  +Y+ L++ GT    +PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:  600 PTTFAQALSREDKDEWKASMDDEYKSLMEMGTWELCHPPPGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGVDYDETFAPVARLSALRMMV 697
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177TB99_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TB99_9BASI)

HSP 1 Score: 85.1 bits (209), Expect = 4.390e-17
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF +A+S E  + W  +M  +Y+ L++ GT     PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct: 1385 PTTFAQALSREDRDEWKASMDDEYKSLMEMGTWELCQPPPGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGVDYDETFAPVARLSALRMMV 1482
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177TZH5_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177TZH5_9BASI)

HSP 1 Score: 84.7 bits (208), Expect = 5.700e-17
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF +A+S E    W  +M  +Y+ L++ GT    +PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:  144 PTTFAQALSREDRADWKASMDDEYKSLIEMGTWELCHPPAGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGIDYDETFAPVARLSALRMMV 241
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177UFG2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177UFG2_9BASI)

HSP 1 Score: 84.7 bits (208), Expect = 5.860e-17
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+TF +A+S E    W  +M  +Y+ L++ GT    +PP   K I   W+Y+ KTDP+G     K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:  511 PTTFAQALSREDRADWKASMDDEYKSLIEMGTWELCHPPAGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGIDYDETFAPVARLSALRMMV 608
[Close]
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Match: A0A177U600_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U600_9BASI)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-16
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWIYEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILV 294
            P+ F EA+S E    W  +M  +Y+ L++  T    +PP   K I   W+Y+ KTDP+G  T  K RLVA+G  QV+G+DYD+TFAP + ++   ++V
Sbjct:  165 PARFAEALSREDKEDWKASMDDEYKSLIEMQTWELCHPPPGRKLIGCRWVYKVKTDPEGRATRKKSRLVAQGFSQVEGIDYDETFAPVARLSALRMMV 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39344.10227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177USG4_9BASI6.570e-1841.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392PKJ6_9FABA1.710e-1741.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A177VSV6_9BASI2.310e-1740.82Integrase catalytic domain-containing protein n=2 ... [more]
A0A177U3B2_9BASI2.980e-1739.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177T2W4_9BASI3.040e-1742.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U3X5_9BASI3.160e-1740.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A177TB99_9BASI4.390e-1740.82Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A177TZH5_9BASI5.700e-1740.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177UFG2_9BASI5.860e-1740.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U600_9BASI1.070e-1640.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39344contigH-paniculata_contig39344:1558..1869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue7.9e-14
Seed eggNOG ortholog102107.XP_008238300.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37UIU@33090,3GY7W@35493,4JWFD@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.4842153-CDS-H-paniculata_contig39344:1557..18691622930206.4842153-CDS-H-paniculata_contig39344:1557..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39344 1558..1869 +
1691481190.438285-CDS-H-paniculata_contig39344:1557..18691691481190.438285-CDS-H-paniculata_contig39344:1557..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39344 1558..1869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39344.10227.1prot_H-paniculata_contig39344.10227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39344 1558..1869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39344.10227.1

>prot_H-paniculata_contig39344.10227.1 ID=prot_H-paniculata_contig39344.10227.1|Name=mRNA_H-paniculata_contig39344.10227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
PSTFKEAVSCEHINVWHKAMTTKYERLVQTGTLNRENPPDNNKPINSMWI
YEWKTDPDGVVTDAKVRLVARGNKQVQGLDYDDTFAPTSSIATNSILVKW
GPKY
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mRNA from alignment at H-paniculata_contig39344:1558..1869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39344.10227.1 ID=mRNA_H-paniculata_contig39344.10227.1|Name=mRNA_H-paniculata_contig39344.10227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig39344:1558..1869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCTACTTTCAAGGAGGCCGTAAGTTGTGAACACATTAATGTATGGCA
CAAAGCCATGACCACAAAATACGAACGTTTAGTACAAACAGGTACTCTTA
ATCGGGAAAACCCTCCTGATAATAATAAACCAATCAATTCCATGTGGATA
TATGAGTGGAAAACAGACCCTGACGGGGTGGTAACGGATGCAAAGGTCAG
ACTAGTAGCCCGTGGAAACAAGCAAGTTCAAGGTCTAGACTATGATGACA
CATTCGCACCAACATCATCAATTGCTACTAACAGCATATTGGTGAAATGG
GGACCCAAGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig39344:1558..1869+

>mRNA_H-paniculata_contig39344.10227.1 ID=mRNA_H-paniculata_contig39344.10227.1|Name=mRNA_H-paniculata_contig39344.10227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig39344:1558..1869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCTACTTTCAAGGAGGCCGTAAGTTGTGAACACATTAATGTATGGCA
CAAAGCCATGACCACAAAATACGAACGTTTAGTACAAACAGGTACTCTTA
ATCGGGAAAACCCTCCTGATAATAATAAACCAATCAATTCCATGTGGATA
TATGAGTGGAAAACAGACCCTGACGGGGTGGTAACGGATGCAAAGGTCAG
ACTAGTAGCCCGTGGAAACAAGCAAGTTCAAGGTCTAGACTATGATGACA
CATTCGCACCAACATCATCAATTGCTACTAACAGCATATTGGTGAAATGG
GGACCCAAGTATCCATCTACTTTCAAGGAGGCCGTAAGTTGTGAACACAT
TAATGTATGGCACAAAGCCATGACCACAAAATACGAACGTTTAGTACAAA
CAGGTACTCTTAATCGGGAAAACCCTCCTGATAATAATAAACCAATCAAT
TCCATGTGGATATATGAGTGGAAAACAGACCCTGACGGGGTGGTAACGGA
TGCAAAGGTCAGACTAGTAGCCCGTGGAAACAAGCAAGTTCAAGGTCTAG
ACTATGATGACACATTCGCACCAACATCATCAATTGCTACTAACAGCATA
TTGGTGAAATGGGGACCCAAGTAT
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