mRNA_H-paniculata_contig39337.10225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39337.10225.1
Unique NamemRNA_H-paniculata_contig39337.10225.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A7R9YAC1_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.790e-23
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   19 KRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            KR ELARFDLVH LNQLE KKKFQLV+R C+ LYA LG FHQCH+++AN EP+MR+LQ AL+ +RK
Sbjct:  319 KRHELARFDLVHELNQLEMKKKFQLVERVCNGLYAELGYFHQCHIVMANMEPRMRDLQLALQLARK 384          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-22
Identity = 48/75 (64.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 EVAMAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRKVST 225
            EVA++KKRFE+ARFD VHHL+QLETKKK ++V RTC+AL+AFL LF +C+ LVA+TE ++REL+ AL  SR+ S+
Sbjct:  154 EVALSKKRFEMARFDFVHHLSQLETKKKHEVVGRTCTALHAFLALFQRCNGLVASTEQRLRELECALTLSRQASS 228          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.650e-22
Identity = 54/101 (53.47%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    4 VAMAKKRFELARFDLVHHLNQLETKKKFQL------------------------------VDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            VA  ++RFEL+RFDLVHHLNQLETKKKFQL                              V+R CSALYAFLG FHQCH LVA  EP MR+LQ+AL  +RK
Sbjct:  506 VAATRRRFELSRFDLVHHLNQLETKKKFQLAVGQRLARQNKKRGTLSTGDAQRLAFAVDEVERVCSALYAFLGYFHQCHTLVATVEPSMRDLQHALHLARK 606          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A7S1U8B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8B4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.370e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   19 KRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            KR ELARFDLVH LNQLE +KKFQ+ +R C+ LYA LG FHQCH+++A  EP MR++Q+AL  +RK
Sbjct:  255 KRHELARFDLVHELNQLEMRKKFQIAERVCNGLYADLGFFHQCHIVMATLEPSMRDMQHALSVARK 320          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.720e-20
Identity = 46/72 (63.89%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 EVAMAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            EVA++KKRFE+ARFDLV HL+ LETKKK ++V RTC+AL+AFL LF +C+ LVA+TE ++REL+ AL  SR+
Sbjct:   37 EVALSKKRFEMARFDLVRHLSLLETKKKHEVVGRTCTALHAFLALFQRCNGLVASTEQRLRELECALTLSRQ 108          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A4D9CVE4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.010e-16
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   16 KKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            ++R+EL R DLV+ LNQLETKKKFQLV+R   ALYA+LG FHQ H  +A  EP MR+LQ  L  SR+
Sbjct:  489 RRRYELGRIDLVNTLNQLETKKKFQLVERVLCALYAYLGYFHQGHEALAAIEPSMRDLQCQLSLSRR 555          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A662XKE9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XKE9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.410e-15
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 EVAMAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            EV  A++RFELARFDLV +LN+L+  KKF LV+   S LYA LG FH CH LV   EP +RE Q  ++ SR+
Sbjct:  427 EVVQARRRFELARFDLVRYLNRLDCMKKFVLVECFNSTLYALLGHFHACHELVKAVEPALRERQEMMQVSRQ 498          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: D0N718_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N718_PHYIT)

HSP 1 Score: 77.0 bits (188), Expect = 1.150e-14
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 EVAMAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            +V  A++RFELARFDLV H+N+++  KKF LV+   S LYA LG FH CH L+ + EP +R  Q  ++ SRK
Sbjct:  704 DVVTARRRFELARFDLVRHMNRVDCMKKFVLVECFNSILYAQLGHFHACHELIKSVEPSLRRRQEMMQLSRK 775          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: A0A0P1ANE9_PLAHL (Arf-gap with coiled-ank repeat and ph domain-containing protein 2-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANE9_PLAHL)

HSP 1 Score: 76.6 bits (187), Expect = 1.560e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 EVAMAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            EV +A++RFELARFDLV ++N++++ KK+ LV+   S +YA LG FH CH LV + EP +R+ Q  L+ SRK
Sbjct:  362 EVLIARRRFELARFDLVRYMNRIDSMKKYVLVECFNSIMYAQLGHFHACHELVKSIEPSLRKRQEMLQVSRK 433          
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Match: H3GSJ5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GSJ5_PHYRM)

HSP 1 Score: 76.3 bits (186), Expect = 2.140e-14
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 EVAMAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLVANTEPQMRELQNALEQSRK 216
            +V +A++RFELARFDLV ++N+++  KKF LV+   S LYA LG FH CH LV + EP +R+ Q  ++ SRK
Sbjct:  360 DVVVARRRFELARFDLVRYMNRIDCMKKFVLVECFNSILYAQLGHFHACHELVKSVEPTLRKRQEMMQVSRK 431          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39337.10225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7R9YAC1_9STRA8.790e-2371.21Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5L2J8_9PHAE1.200e-2264.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCL2_9STRA1.650e-2253.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U8B4_9STRA3.370e-2163.64Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7FVG0_ECTSI1.720e-2063.89Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A4D9CVE4_9STRA2.010e-1661.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A662XKE9_9STRA2.410e-1555.56Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D0N718_PHYIT1.150e-1451.39Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A0P1ANE9_PLAHL1.560e-1451.39Arf-gap with coiled-ank repeat and ph domain-conta... [more]
H3GSJ5_PHYRM2.140e-1451.39Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39337contigH-paniculata_contig39337:82..321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue8.2e-16
Seed eggNOG ortholog2880.D7FVG0
Preferred nameAGD4
KEGG koko:K12489
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0003674,GO:0005096,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007275,GO:0007389,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010051,GO:0010087,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030234,GO:0030695,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035091,GO:0042221,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0097708,GO:0098657,GO:0098772,GO:0099402,GO:1905392
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons1
Model size240
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.1516652-CDS-H-paniculata_contig39337:81..3121622930206.1516652-CDS-H-paniculata_contig39337:81..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39337 82..312 -
1691481190.2626941-CDS-H-paniculata_contig39337:81..3121691481190.2626941-CDS-H-paniculata_contig39337:81..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39337 82..312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.1675184-UTR-H-paniculata_contig39337:312..3211622930206.1675184-UTR-H-paniculata_contig39337:312..321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39337 313..321 -
1691481190.2758427-UTR-H-paniculata_contig39337:312..3211691481190.2758427-UTR-H-paniculata_contig39337:312..321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39337 313..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39337.10225.1prot_H-paniculata_contig39337.10225.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39337 82..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39337.10225.1

>prot_H-paniculata_contig39337.10225.1 ID=prot_H-paniculata_contig39337.10225.1|Name=mRNA_H-paniculata_contig39337.10225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MAKKRFELARFDLVHHLNQLETKKKFQLVDRTCSALYAFLGLFHQCHLLV
ANTEPQMRELQNALEQSRKVSTVYMV*
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mRNA from alignment at H-paniculata_contig39337:82..321-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39337.10225.1 ID=mRNA_H-paniculata_contig39337.10225.1|Name=mRNA_H-paniculata_contig39337.10225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig39337:82..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGGCGATGGCCAAGAAGCGATTCGAGCTGGCGCGGTTCGATCTGGT GCACCACCTTAATCAGCTCGAAACGAAGAAGAAGTTTCAGCTGGTCGACA GGACCTGCTCCGCCCTGTACGCCTTCCTGGGACTGTTCCACCAGTGCCAC TTGCTCGTCGCCAACACGGAGCCGCAGATGCGAGAGCTTCAGAACGCCTT GGAACAGTCCAGAAAGGTGAGTACTGTGTACATGGTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig39337:82..321-

>mRNA_H-paniculata_contig39337.10225.1 ID=mRNA_H-paniculata_contig39337.10225.1|Name=mRNA_H-paniculata_contig39337.10225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig39337:82..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAGAAGCGATTCGAGCTGGCGCGGTTCGATCTGGTGCACCACCT
TAATCAGCTCGAAACGAAGAAGAAGTTTCAGCTGGTCGACAGGACCTGCT
CCGCCCTGTACGCCTTCCTGGGACTGTTCCACCAGTGCCACTTGCTCGTC
GCCAACACGGAGCCGCAGATGCGAGAGCTTCAGAACGCCTTGGAACAGTC
CAGAAAGGTGAGTACTGTGTACATGGTGTAAATGGCCAAGAAGCGATTCG
AGCTGGCGCGGTTCGATCTGGTGCACCACCTTAATCAGCTCGAAACGAAG
AAGAAGTTTCAGCTGGTCGACAGGACCTGCTCCGCCCTGTACGCCTTCCT
GGGACTGTTCCACCAGTGCCACTTGCTCGTCGCCAACACGGAGCCGCAGA
TGCGAGAGCTTCAGAACGCCTTGGAACAGTCCAGAAAGGTGAGTACTGTG
TACATGGTGTAA
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