mRNA_H-paniculata_contig39312.10224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39312.10224.1
Unique NamemRNA_H-paniculata_contig39312.10224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39312.10224.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 5.370e-5
Identity = 44/167 (26.35%), Postives = 72/167 (43.11%), Query Frame = 1 
Query: 1012 NEPGHLKMNFPQRMCLICKGIGHGESRHRLSAVFSSDRFRDIVEHGFTTTGAGQDEFAPVIELVEEDKPVPVDGCE--AFWVADSGVTAHMTPSNELMFDYETCSN-LFVPVANGETLPIEGYGKMLVWMKDRGQIHKFSLSCVAHVPGLDTNCFSLQIVVKQGLSV 1503
            N  G+ K N    +C  C+  GH ES          D+ +       TTTG  +  F        + +    D       W+ DSG + H TP   ++ DY+T    + V  A G+   I G G + + ++ +G     +L  V HVPG+D+N  S  +++ +G  +
Sbjct:  235 NSSGNSKSNL---LCTHCQRKGHVESTCWTKYPHLKDKSKP------TTTGEARVAFCATTRTARKAQSGKNDEYSNPKHWILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEI 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39312.10224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A535F6U2_9CHLR5.370e-526.35DDE-type integrase/transposase/recombinase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39312contigH-paniculata_contig39312:205..1821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1619
Cds size1155
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.0862722-UTR-H-paniculata_contig39312:204..6661622930206.0862722-UTR-H-paniculata_contig39312:204..666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39312 205..666 +
1691481190.240743-UTR-H-paniculata_contig39312:204..6661691481190.240743-UTR-H-paniculata_contig39312:204..666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39312 205..666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.1037312-CDS-H-paniculata_contig39312:666..18211622930206.1037312-CDS-H-paniculata_contig39312:666..1821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39312 667..1821 +
1691481190.2503412-CDS-H-paniculata_contig39312:666..18211691481190.2503412-CDS-H-paniculata_contig39312:666..1821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39312 667..1821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39312.10224.1prot_H-paniculata_contig39312.10224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39312 667..1821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39312.10224.1

>prot_H-paniculata_contig39312.10224.1 ID=prot_H-paniculata_contig39312.10224.1|Name=mRNA_H-paniculata_contig39312.10224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MIGGSGIGVPGYDTHTNPGPLEFGYPGRNGMTTFDNRILERRNIHFDSSK
GNAWWTFKNEIEVHARLNGFGHSFFRDPPLCMNPLNVGELRGLGVSEGRI
ESARRAYTILLNIVRDGVARHMVMTARSPSGAWRALDAHYSPKHTGARID
VHSKVNGTGGGTNSGNSYGNKKNVAETRVWFQCNEPGHLKMNFPQRMCLI
CKGIGHGESRHRLSAVFSSDRFRDIVEHGFTTTGAGQDEFAPVIELVEED
KPVPVDGCEAFWVADSGVTAHMTPSNELMFDYETCSNLFVPVANGETLPI
EGYGKMLVWMKDRGQIHKFSLSCVAHVPGLDTNCFSLQIVVKQGLSVCLK
EEGAAIALPNGNDLLCRKIGKHELLVATRFPPPPA
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mRNA from alignment at H-paniculata_contig39312:205..1821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39312.10224.1 ID=mRNA_H-paniculata_contig39312.10224.1|Name=mRNA_H-paniculata_contig39312.10224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-paniculata_contig39312:205..1821+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCAAACTCATCATTTCTATACTATAGATTCAACAGCGGGGAGCTGTGT
GAATCTAACTGTGGCCAGAGCATATCAACACGCTAGCGTGAGGTCTATCG
ATAGCCTGGTGGAGATACAGGGTTCATCATGAGTGGTGAAAGTAGGGTGC
AATCAGAGAGTGTGTCTGTGGAAGGCGAACAAGGAATTCGTAGACAGACG
ATGGGGGATGTAGATTTAAGGGAACAGCTTAAACAATTCACAACTATGGT
AGCTGGATTGGTGAAGGAGGCTTCGGGTAGGAGCACGGGAGGTGCTCTTC
GCTCTGGTCGCAAGGGCGAACTGGGACGCCCGGGAGCTGCATCGATGGAT
TTCGGTGCGGGCACAACAACACTCAGTGGGATGACCAATCTTGGGTTTGG
TCACCCAGGAGGGGGGGACAGAAGCAACGCGCGAAAGCGCATTAGGTGAC
TACGCCCCTGGTATGATAGGAGGCAGTGGTATTGGTGTCCCAGGTTATGA
TACTCATACTAATCCTGGACCATTAGAGTTTGGCTACCCAGGTCGGAATG
GGATGACAACTTTCGACAACAGAATACTGGAACGTAGAAATATACATTTT
GATAGTAGCAAGGGCAACGCATGGTGGACGTTCAAGAACGAGATTGAGGT
GCATGCCCGATTGAATGGTTTTGGACACTCTTTTTTCAGAGACCCACCTC
TATGCATGAACCCCCTTAATGTAGGAGAGTTACGTGGGTTAGGTGTGAGT
GAGGGAAGGATAGAGAGTGCTAGGCGTGCTTACACGATTCTGTTAAATAT
AGTAAGGGATGGAGTGGCGAGGCACATGGTCATGACGGCAAGATCGCCGT
CTGGTGCGTGGCGAGCTTTAGATGCGCATTATTCACCGAAACACACGGGT
GCCAGAATCGATGTTCACAGTAAGGTCAACGGCACCGGAGGAGGTACGAA
CAGCGGTAATTCTTACGGAAACAAGAAAAATGTCGCTGAAACTCGTGTTT
GGTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTTTCCTCAGCGC
ATGTGTCTGATCTGCAAAGGGATCGGTCATGGCGAGAGCAGGCACAGGTT
GTCAGCAGTGTTCTCTTCGGACAGGTTCAGGGACATCGTTGAACACGGTT
TCACGACCACAGGGGCAGGGCAGGACGAGTTTGCTCCGGTAATTGAGCTT
GTTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGCGTTTTGGGT
GGCCGACAGTGGGGTTACGGCCCACATGACTCCGTCTAACGAACTGATGT
TTGATTACGAAACCTGCAGTAATTTGTTTGTGCCGGTGGCTAACGGCGAA
ACGCTTCCGATTGAGGGATACGGTAAGATGTTGGTGTGGATGAAGGATCG
GGGCCAGATACACAAATTCAGCTTGAGTTGTGTAGCGCATGTTCCGGGTC
TGGACACGAATTGTTTCTCCCTACAGATTGTAGTGAAGCAGGGACTTTCT
GTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAATGA
TCTTTTGTGCAGAAAAATCGGAAAACATGAACTTTTGGTAGCGACTCGAT
TCCCGCCCCCACCTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig39312:205..1821+

>mRNA_H-paniculata_contig39312.10224.1 ID=mRNA_H-paniculata_contig39312.10224.1|Name=mRNA_H-paniculata_contig39312.10224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig39312:205..1821+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGGAGGCAGTGGTATTGGTGTCCCAGGTTATGATACTCATACTAA
TCCTGGACCATTAGAGTTTGGCTACCCAGGTCGGAATGGGATGACAACTT
TCGACAACAGAATACTGGAACGTAGAAATATACATTTTGATAGTAGCAAG
GGCAACGCATGGTGGACGTTCAAGAACGAGATTGAGGTGCATGCCCGATT
GAATGGTTTTGGACACTCTTTTTTCAGAGACCCACCTCTATGCATGAACC
CCCTTAATGTAGGAGAGTTACGTGGGTTAGGTGTGAGTGAGGGAAGGATA
GAGAGTGCTAGGCGTGCTTACACGATTCTGTTAAATATAGTAAGGGATGG
AGTGGCGAGGCACATGGTCATGACGGCAAGATCGCCGTCTGGTGCGTGGC
GAGCTTTAGATGCGCATTATTCACCGAAACACACGGGTGCCAGAATCGAT
GTTCACAGTAAGGTCAACGGCACCGGAGGAGGTACGAACAGCGGTAATTC
TTACGGAAACAAGAAAAATGTCGCTGAAACTCGTGTTTGGTTTCAATGTA
ATGAGCCAGGTCATCTGAAGATGAATTTTCCTCAGCGCATGTGTCTGATC
TGCAAAGGGATCGGTCATGGCGAGAGCAGGCACAGGTTGTCAGCAGTGTT
CTCTTCGGACAGGTTCAGGGACATCGTTGAACACGGTTTCACGACCACAG
GGGCAGGGCAGGACGAGTTTGCTCCGGTAATTGAGCTTGTTGAAGAGGAC
AAGCCAGTACCAGTAGATGGTTGTGAGGCGTTTTGGGTGGCCGACAGTGG
GGTTACGGCCCACATGACTCCGTCTAACGAACTGATGTTTGATTACGAAA
CCTGCAGTAATTTGTTTGTGCCGGTGGCTAACGGCGAAACGCTTCCGATT
GAGGGATACGGTAAGATGTTGGTGTGGATGAAGGATCGGGGCCAGATACA
CAAATTCAGCTTGAGTTGTGTAGCGCATGTTCCGGGTCTGGACACGAATT
GTTTCTCCCTACAGATTGTAGTGAAGCAGGGACTTTCTGTCTGTTTGAAG
GAGGAGGGTGCAGCAATTGCACTACCTAATGGGAATGATCTTTTGTGCAG
AAAAATCGGAAAACATGAACTTTTGGTAGCGACTCGATTCCCGCCCCCAC
CTGCTATGATAGGAGGCAGTGGTATTGGTGTCCCAGGTTATGATACTCAT
ACTAATCCTGGACCATTAGAGTTTGGCTACCCAGGTCGGAATGGGATGAC
AACTTTCGACAACAGAATACTGGAACGTAGAAATATACATTTTGATAGTA
GCAAGGGCAACGCATGGTGGACGTTCAAGAACGAGATTGAGGTGCATGCC
CGATTGAATGGTTTTGGACACTCTTTTTTCAGAGACCCACCTCTATGCAT
GAACCCCCTTAATGTAGGAGAGTTACGTGGGTTAGGTGTGAGTGAGGGAA
GGATAGAGAGTGCTAGGCGTGCTTACACGATTCTGTTAAATATAGTAAGG
GATGGAGTGGCGAGGCACATGGTCATGACGGCAAGATCGCCGTCTGGTGC
GTGGCGAGCTTTAGATGCGCATTATTCACCGAAACACACGGGTGCCAGAA
TCGATGTTCACAGTAAGGTCAACGGCACCGGAGGAGGTACGAACAGCGGT
AATTCTTACGGAAACAAGAAAAATGTCGCTGAAACTCGTGTTTGGTTTCA
ATGTAATGAGCCAGGTCATCTGAAGATGAATTTTCCTCAGCGCATGTGTC
TGATCTGCAAAGGGATCGGTCATGGCGAGAGCAGGCACAGGTTGTCAGCA
GTGTTCTCTTCGGACAGGTTCAGGGACATCGTTGAACACGGTTTCACGAC
CACAGGGGCAGGGCAGGACGAGTTTGCTCCGGTAATTGAGCTTGTTGAAG
AGGACAAGCCAGTACCAGTAGATGGTTGTGAGGCGTTTTGGGTGGCCGAC
AGTGGGGTTACGGCCCACATGACTCCGTCTAACGAACTGATGTTTGATTA
CGAAACCTGCAGTAATTTGTTTGTGCCGGTGGCTAACGGCGAAACGCTTC
CGATTGAGGGATACGGTAAGATGTTGGTGTGGATGAAGGATCGGGGCCAG
ATACACAAATTCAGCTTGAGTTGTGTAGCGCATGTTCCGGGTCTGGACAC
GAATTGTTTCTCCCTACAGATTGTAGTGAAGCAGGGACTTTCTGTCTGTT
TGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAATGATCTTTTG
TGCAGAAAAATCGGAAAACATGAACTTTTGGTAGCGACTCGATTCCCGCC
CCCACCTGCT
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