mRNA_H-paniculata_contig3923.10209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3923.10209.1
Unique NamemRNA_H-paniculata_contig3923.10209.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3923.10209.1 vs. uniprot
Match: A0A6H5JGM0_9PHAE (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGM0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.820e-20
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 RPEFRRSKAWGSELPPNAFTLVTTERFWTLCADSQGGVLQWLRMLSVAIDEDVAVVDDGETLFHVK 198
            RPE  R K    ELP NAFT+VTT+R WTL A+S+  VL+WLRM+SVA+DEDVAVVDDGE +F VK
Sbjct:  585 RPEIGRQKLPAVELPANAFTVVTTQRQWTLAAESRTAVLEWLRMISVAVDEDVAVVDDGEIMFEVK 650
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BLAST of mRNA_H-paniculata_contig3923.10209.1 vs. uniprot
Match: A0A7S3HC11_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC11_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-12
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   37 ELPPNAFTLVTTERFWTLCADSQGGVLQWLRMLSVAIDEDVAVVDDGETLFHVK 198
            + PP+ F +VTTER WTLCA+SQ    +WL++L+ A+DEDVA++ D E +F VK
Sbjct:  486 DTPPHCFDIVTTEREWTLCAESQDNAQRWLKLLTKAVDEDVAILPDEELVFKVK 539
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BLAST of mRNA_H-paniculata_contig3923.10209.1 vs. uniprot
Match: A0A482S2P2_9ARCH (PH domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2P2_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 3.300e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   19 SKAWGSELPPNAFTLVTTERFWTLCADSQGGVLQWLRMLSVAIDEDVAVVDDGETLFHVK 198
            +K+   + PP  F +VTTER WTLCA+SQ  V +WL++L+ A+DEDVA++ D E +F VK
Sbjct:  392 NKSDNPDTPPYCFDIVTTEREWTLCAESQENVQRWLQILTRAVDEDVAILPDEELVFKVK 451
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BLAST of mRNA_H-paniculata_contig3923.10209.1 vs. uniprot
Match: A0A7S3HBT1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBT1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-9
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   37 ELPPNAFTLVTTERFWTLCADSQGGVLQWLRMLSVAIDEDVAVVDDGETLFHVK 198
            + P + F +VT ER WTLCA++     QWL++L+ A+DEDVA++ D E +F VK
Sbjct:   24 DTPAHCFDIVTVEREWTLCAENADNEQQWLKLLTKAVDEDVAILPDEELVFKVK 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3923.10209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGM0_9PHAE1.820e-2066.67PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3HC11_9STRA2.420e-1253.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S2P2_9ARCH3.300e-1251.67PH domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S3HBT1_9STRA1.230e-948.15Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3923contigH-paniculata_contig3923:8183..8380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D8LG12
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2CETD@1,2S3H4@2759
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-21_005000.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930203.6900225-CDS-H-paniculata_contig3923:8182..83801622930203.6900225-CDS-H-paniculata_contig3923:8182..8380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3923 8183..8380 +
1691481189.128924-CDS-H-paniculata_contig3923:8182..83801691481189.128924-CDS-H-paniculata_contig3923:8182..8380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3923 8183..8380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3923.10209.1prot_H-paniculata_contig3923.10209.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3923 8183..8380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3923.10209.1

>prot_H-paniculata_contig3923.10209.1 ID=prot_H-paniculata_contig3923.10209.1|Name=mRNA_H-paniculata_contig3923.10209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
RPEFRRSKAWGSELPPNAFTLVTTERFWTLCADSQGGVLQWLRMLSVAID
EDVAVVDDGETLFHVK
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mRNA from alignment at H-paniculata_contig3923:8183..8380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3923.10209.1 ID=mRNA_H-paniculata_contig3923.10209.1|Name=mRNA_H-paniculata_contig3923.10209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig3923:8183..8380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCCGAGTTTAGGCGAAGCAAAGCATGGGGCTCAGAGCTACCACCCAA
CGCATTTACTCTGGTCACTACAGAACGGTTCTGGACGCTGTGCGCCGATT
CTCAGGGCGGAGTGTTGCAATGGCTGCGCATGCTCTCGGTAGCGATAGAT
GAAGATGTGGCTGTCGTCGACGACGGAGAAACTTTGTTCCACGTTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3923:8183..8380+

>mRNA_H-paniculata_contig3923.10209.1 ID=mRNA_H-paniculata_contig3923.10209.1|Name=mRNA_H-paniculata_contig3923.10209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig3923:8183..8380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCCGAGTTTAGGCGAAGCAAAGCATGGGGCTCAGAGCTACCACCCAA
CGCATTTACTCTGGTCACTACAGAACGGTTCTGGACGCTGTGCGCCGATT
CTCAGGGCGGAGTGTTGCAATGGCTGCGCATGCTCTCGGTAGCGATAGAT
GAAGATGTGGCTGTCGTCGACGACGGAGAAACTTTGTTCCACGTTAAGAG
ACCCGAGTTTAGGCGAAGCAAAGCATGGGGCTCAGAGCTACCACCCAACG
CATTTACTCTGGTCACTACAGAACGGTTCTGGACGCTGTGCGCCGATTCT
CAGGGCGGAGTGTTGCAATGGCTGCGCATGCTCTCGGTAGCGATAGATGA
AGATGTGGCTGTCGTCGACGACGGAGAAACTTTGTTCCACGTTAAG
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