mRNA_H-paniculata_contig3920.10204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3920.10204.1
Unique NamemRNA_H-paniculata_contig3920.10204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3920.10204.1 vs. uniprot
Match: D8LFG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG8_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.240e-7
Identity = 55/161 (34.16%), Postives = 75/161 (46.58%), Query Frame = 1 
Query:   67 DAAAQVKGLAEDEGSDSTTSLAAIVEQGRAKIERLQAEANRISVDLGDTTAPIADRISTGAAGLPEVAADRSKSVDLSGSGLTVVQDSAGKSSERFGRGADEALSGLRRGGKTVTQGVSRLSKIATVDANGVAESLGGGVTSGVPE--VRTEGSAFSSQVG 543
            D + QVK   E  GS S   +AA++EQGRA +E LQAEA+RIS  +     P+AD++S G+                             + SE FGRG D  L  +   G+ V QGVS +S  + V  +G+    G   TSG+    + T G A S   G
Sbjct:  371 DVSQQVKPFTEKVGSASEAGVAAVLEQGRASLENLQAEADRISAQVAS---PVADKLSAGS-----------------------------RLSEAFGRGRDGVLKAVGEAGRAVDQGVSAVSSRSAVVVDGLPALKG--QTSGLSARLLETSGRALSRATG 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3920.10204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFG8_ECTSI3.240e-734.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3920contigH-paniculata_contig3920:7015..12689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002230.1
Exons4
Model size956
Cds size954
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3920.10204.1prot_H-paniculata_contig3920.10204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3920 7015..12689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930203.219036-CDS-H-paniculata_contig3920:7014..74311622930203.219036-CDS-H-paniculata_contig3920:7014..7431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 7015..7431 -
1691481188.9112248-CDS-H-paniculata_contig3920:7014..74311691481188.9112248-CDS-H-paniculata_contig3920:7014..7431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 7015..7431 -
1622930203.2488325-CDS-H-paniculata_contig3920:9213..96031622930203.2488325-CDS-H-paniculata_contig3920:9213..9603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 9214..9603 -
1691481188.9240808-CDS-H-paniculata_contig3920:9213..96031691481188.9240808-CDS-H-paniculata_contig3920:9213..9603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 9214..9603 -
1622930203.2744036-CDS-H-paniculata_contig3920:11126..111921622930203.2744036-CDS-H-paniculata_contig3920:11126..11192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 11127..11192 -
1691481188.9340234-CDS-H-paniculata_contig3920:11126..111921691481188.9340234-CDS-H-paniculata_contig3920:11126..11192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 11127..11192 -
1622930203.2911966-CDS-H-paniculata_contig3920:12608..126891622930203.2911966-CDS-H-paniculata_contig3920:12608..12689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 12609..12689 -
1691481188.9433393-CDS-H-paniculata_contig3920:12608..126891691481188.9433393-CDS-H-paniculata_contig3920:12608..12689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3920 12609..12689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3920.10204.1

>prot_H-paniculata_contig3920.10204.1 ID=prot_H-paniculata_contig3920.10204.1|Name=mRNA_H-paniculata_contig3920.10204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
GKGGGETARGINGDGVVLAGTEDAAAQVKGLAEDEGSDSTTSLAAIVEQG
RAKIERLQAEANRISVDLGDTTAPIADRISTGAAGLPEVAADRSKSVDLS
GSGLTVVQDSAGKSSERFGRGADEALSGLRRGGKTVTQGVSRLSKIATVD
ANGVAESLGGGVTSGVPEVRTEGSAFSSQVGDLASRAASQAADTLAATTS
QLSTQISDSLARLSPPELDLSLNKAAEAARNTLARVSDITSFFPDGSPAA
ATTADARKFVAKVRSAVTTALGSSGGGSGGGLNTPGEKDLEYIAAAAALS
TAVLAARGAGGARARAQG
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mRNA from alignment at H-paniculata_contig3920:7015..12689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3920.10204.1 ID=mRNA_H-paniculata_contig3920.10204.1|Name=mRNA_H-paniculata_contig3920.10204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5675bp|location=Sequence derived from alignment at H-paniculata_contig3920:7015..12689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAAGGAGGGGGAGAGACAGCTAGGGGCATTAACGGCGACGGTGTTGT
GTTGGCGGGGACGGAAGATGCTGCAGCGCAGGTACTGTGTGCAGCTTTAC
CGTTCTGTAGTGTGATAACCTACTGTAAGGGTGCCGTAAGCTCCCCGATA
CTTGCCTACCATCCATATCCAGGGCTGTTCGTCGCCCATTCAAAACTATG
GAAATGTACGGTACAATATTGGGGTCTGAAGGTATGTTTTATTAGGTTTT
CTGATCCTTAAATTGCCTGGTGGGAACAAAGTCTCAAGATGATGATGATG
GTACCTCAAAAGAGTATGGTATATTATACTGGGGGCATGCCGTATATACT
GCATGCACCTCCGGCCGTGGTCCGAGAGTTGGTGTACGTAGCATTCAGTG
GTCACCAAGCAACGTTCATATCTTCTGTGGTTGTACTGGATTGTGAGTTT
GTTCTATTATCAAGTCATTTTGTTCACTCTTCCGTAGCAAATTGGTTCTT
TTTTTTCGGGGCAATTGTTTCTTATTTGGGGTATTTGTTCTTTGTTTTCA
GGTTGTATCTCTGTCCCCCCCCCCCCCTCCCCCCCGGCGCGCTCCAAGTC
TTTCTCGTGGTACATATACGCTGCTCGCAGCCTGAATATCCATCCAGTTT
CATCCTGCGTCGTAGGTGTCATGCTTGCTCAACGTTCTGCGTTATAGGTG
CATTTTGCCTCGTGTCGAAGTATGAGGTTAACTCCAAAGTACATAAGTCA
CCAACGCCCCCCCCCCTGCCCTCTCCCCCGAACGCCTGATACACCCCCCC
GATCGCTCAAATCAGACCCGCGGTCAGTCAGAGGACAATGATTCCCTAAC
CCGCAAAAACATCACGTATGTATCCCAGGTGGTTGATTGGAACATGGTCT
AGCACACTATTGCGCCGATTTGTGTTTGTAATTGACTATCTGTAGCCTAA
AACCCTCCCGAAGCACCTTACTTTTCTAGTGTTGGACTGTTTCTTTTTCT
CCCACACGTTAACCCGATCCTCCCTTTCCGCTATCTGATAATAGACATTA
GACATACTCCAGCAAAAGAAATTAGCGATCGTCGACAGGAAATAGGGTTT
GAAGGGGAAGTGACTTTCGCCCCAGCATCAGCGACCGCAAGTTCTCCATG
TAGACAACAGCTTCTAGCCGTATTATCCTGGACGCTCGGGTTATCAAAGC
GATGCGCACTTCCATTTCATCGTTCAGATAAAAACTTGAATAGAATTTAA
ATATTTCATGTACGTAGAGCCATTTGCTACAGAAAACAAGTAACTTTTGT
TATAAATGAGTTTGTCAGGGTCGTTTTCTAACGAGTAATGCGCACATCTC
CGTATTCGAAAACAGTAGCTCCTGGGGGCTGGGTATCACCCCTCTCCCTA
CTCCCGAGGACACGTGGTCGGTCAATGGTCTAACAACTATGGCCTGCAAA
ACATGAGTACCCCCCCCCCCCTCAACCCTTGATCCTTTTCTTGGCAGGTG
AAGGGATTGGCCGAGGATGAAGGAAGCGATTCCACGACCAGCTTGGCAGC
GATAGTTGAGCAGGTATGGAGTGACGAGGGTTGTAGATACGTAGGCTCAG
TTTGAGGGTCTACTGTAACCTCATGAGGTCATCATCCATTTTCGATATTC
AAAATAGTAAGATCAAAAGTAAGTATTTTCTCATCCGAGCTTTCATTTTT
CTCCAACGACTTTCGACGAGTTCTCGTGGTCGAATTGATGTTATTTACAT
GTTTTTGACAAAACAAAAAGTAGCGAAATCATCCCACCACTATAATAGGT
TATTGCCCTCGACGACTCGATACTACAGATTCACAGGTGCTGCACAACCT
GTCAGTCTAGAACGGGCGGAGCGAGGGGGGACTGATCTAGAGCTAGAGCT
TGATACGTATATTAGGTTTTGGTGTTTTTTGAAAGGTTTGGGGTAGGTTG
GGTTGCGGTTAGCTCACTGGAGTCGACCATATAGGAGTTGAACCATCTAC
TCGCTAGTCGTAGATCATTATCCGTGATGGTATGTTTGTATCGACTACTT
GCAGGCTGTTTTTTGCATCAGCACGTGTGATAAAGTGCTCTACAGAACAT
CCAAGCTTTTTTTTTGGCGTGGAACATGGGATAAGACTCTACCTGTATAT
GCAGCTTGTTTGGAGCATCGCCTTGGGGATGAATGTTTTGTTTACACTTG
ACACTTTTGCTTGTTTGCTAATCGCTACGTCCGAGTTCACGTAGTTATTC
CCCTCGAATGCAATTGCCCGCTGGCTGTCTCCATTTCGTTGGCTCTTGTG
ACATGGGGCTGTAGAGCTGCTGTATGTAGGGCATGGGGGAGTTCGTGAGG
AATATCCTGCAAGCTTGTTAACTTTGGTTGAAGAATTCACGCCCTACCGG
ATGTTCGCTGAATGAACCGGTAGTTGTAGTGGCCTAGAGCGAAAGTGCGT
GTGACCGTACTTGATCAAGAGTGCATAAGCAGATTATGCTCCAAACTGTA
TCACACATGAAGGGACATGTTAACTGCGTGTGGCACGGCGTTGTCTATGC
TTGTGCGCGACGATCAAAGTCCCGTGCGGTACTCCAGGTACTGCCACGCG
TGCCAAAAGGGCAACATTTGTTACTCGGGATGCTCCAAACCCAATGGCGA
ATCCGGTAGACGTAGGAACGTGAGGATGGATGATGAATCGTGGTTAGTAC
TGTAGCACTCTTGTGAAGCGTAGCCTGGCAGGAAAAATTTCGGCATACTC
TATCCCGGCATCGTAGGGATTCAATTCCAATGGTCAACAGACTACGGCAT
GGGTTTTCATGAACACCCCGCCCACTCACCCCCTACTTGCAGCTTGGTAT
TCTTAGGCACGCGCGGTGAATGGTTGAATAACTATGGAATGCAAAACGTG
AGTACGTCCTCTGCCCCCCTTCCCCCATGTTTTCGCGGTTCAATGCAACC
TAAGAAAATGTCAAGCCTAAAAATCGTCATTACCTATGCCACAGTCCAAA
AACATACGCCTCCTTCCTACCACGCTTGACCCTACCTCGCTCTCTGTCGC
TCTGTCTCCCCCGCACAACGCAAACGCGAAAATCAGGGCCGTGCTAAGAT
CGAACGCCTGCAGGCCGAAGCCAACCGGATCTCCGTAGATCTCGGTGACA
CCACTGCACCGATAGCCGACAGGATATCCACCGGTGCCGCCGGTCTCCCC
GAGGTCGCCGCGGACCGGTCCAAGAGTGTCGACTTGTCCGGCAGCGGCCT
AACGGTGGTTCAGGATTCCGCTGGGAAAAGTTCGGAGCGATTCGGGCGCG
GGGCGGACGAAGCGCTGTCTGGGTTACGGCGGGGTGGAAAGACGGTGACG
CAGGGAGTTTCACGGCTGTCCAAGATCGCCACTGTTGATGCGAATGGCGT
GGCTGAGTCGTTAGGGGGCGGGGTGACTTCTGGGGTGCCGGAGGTGCGAA
CCGAGGGTTCTGCTTTTTCCTCGCAGGTAAGGTTTACGTTCTTTTTGCGT
TTGTTTTTCATGTGTGTGTGTGTGTGTGTTTGCTTTTTTTCGTGTGTGTG
TGTGTGTGTGTTTGCTTTTTTTCGTGTGTGTGCGCGTTCTCGGTGTCTGT
TTGTGCCTTTGTGCTTTTGTGCTACACATATATTTATTTTTTTTCGGGAT
TTTGTGTTTTTAGTAGGAAAAACAAGAGGTTGAAGCGTTTCTGTAAGAGT
GAGGTTAGTTGTCATACTGGCATGCCGACCGTGAACAGTCGTTACGTCGG
GTCAGAAAGTGCTGTGAGACATGCCTACTGCCAGCTTGCGTATCGTATGA
GCAGTTGAACGGCATTGAAAGTTTTGGTGTTTACTTGTTCCGATACCGCG
CGCTTTACCTTTCACCCGGGCCACCGTGTGTGCGTGTGTGTCTGTGTGTG
CACGTGTTTTTGGTATGGTGGGCTCTCCATGAAACCCTGCACTGTTATTG
TGCCGTGAATCGCACACACAGGCCAACGGCAAGAAAGGCAAGAGTTCCCC
GTGTCTTCTACTGCGGCCCCCATATTTAAGTAGCGGGTGGATTTTAGGGA
CTACGTTGCAGCTGCATCAATTTTGATGTTTTGAGCGAGAACAACCAGTG
TGTGTTCGCCCCCAGCATGGACTACTACATATAGTACTCTAGCTTTGGTT
TGCACGTGGTTACTGGATTTTTAGTCATGGATTGGTAGAAAAAGTATAAA
AGTTACATCTTGGAGTTTTATAAAGGATAGTAATTTACCACTTTTTAATG
GATTTTTTGGTCGTCCTTGTATCTAAATTAGCGGAGAAAGTCACGTTTTG
TGGTTCAACTTCAAACATATTTCACGAATTTAGTTATAACTCATTTTTTG
TGGCCATATTTGGTTCTGAATTGAGACGAAACATGGCATGTATTCGAATT
ATCCAAGAGTTGAAATTTTCGGTCGGTATCATGTACAGGTTGTGTGAGGT
TGTAGCAGTAGCTCCCATATGCACTACAACGCAAATTGGCCATACTGTCG
CACAGGGAGGGGTCGGAAGGAGGGGGGGGTTACCCAAAATAACAAGAGTA
ATTCTGCTTTTCTTATGTCATACAAAGTTTACTGATGAGTGTACGTAGTC
ACGAGTTTAAGCTATACAACGTCAGCGGGAGACATGCCCTTAAACTTGAA
ATTGAAACATTGTAGGTTTTCGCAGATGGCAGGGCGGGTTGGCTTTTCCC
GGAGCTCTGTTTCCCCTCCCCGCGCGCCCCCCCGCGCGCCTCCGCCCGCC
CGCCCTCCCCCCACGTCTTCTCGTTTCACGGTTGTGTGGGCCCGCCGTGA
TCTTGCAATATATGATGATGGTGACTCTATAGTAGTAGAACAAACCATAG
CTACATACTATTCTGAAGCACCATTCGAATCGAGTATACCACACTGTTGT
TTTGGGACATGCTCATCGTCATGTCGAAAGCACTCAGGTATAGGGCAGAA
AAAATTCGATGAGGGTTTCTTGGTCAACTACAAATGACGAAATCCGAAAA
GTCGACGAAGGTATCAAGTACAGCTAGCTATCAAACCGAAAATTCGATGA
ATGTTTAAGGGTCAGCTTATTATGAAATTCGATTTGGGCGTGAACGTGTA
GCCGGGCCTTTACGGCTCCTTCATCCAAGGTGTCCGAGGTGCATATACTT
AGCAGTTTCAACCTGCAGCACAAGCCATCGCAGACAGACAGACCGGCAGA
CAAACCCACACGCTCACACGCTTCCCCTATACACTCATATCAATCGTGCG
ATATGTAGGTGGGCGACTTGGCGAGCCGAGCCGCGTCGCAAGCCGCCGAC
ACCCTGGCCGCCACGACGAGCCAACTCTCGACCCAAATCTCCGACAGCCT
GGCACGTCTCTCACCGCCGGAGCTAGACCTCAGCTTGAACAAGGCCGCCG
AGGCTGCTCGAAACACGCTAGCGCGGGTCTCCGACATTACTTCTTTCTTT
CCCGATGGCTCCCCGGCGGCGGCAACAACTGCAGATGCTAGGAAGTTTGT
CGCGAAGGTTCGATCAGCCGTTACCACCGCCCTCGGCAGCAGCGGTGGCG
GTAGCGGCGGCGGGTTAAATACTCCCGGGGAGAAAGACCTAGAGTACATC
GCGGCGGCCGCCGCGTTGTCGACGGCCGTTTTGGCGGCGAGGGGTGCCGG
CGGTGCGAGGGCGCGCGCGCAGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig3920:7015..12689-

>mRNA_H-paniculata_contig3920.10204.1 ID=mRNA_H-paniculata_contig3920.10204.1|Name=mRNA_H-paniculata_contig3920.10204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig3920:7015..12689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAAGGAGGGGGAGAGACAGCTAGGGGCATTAACGGCGACGGTGTTGT
GTTGGCGGGGACGGAAGATGCTGCAGCGCAGGGGAAAGGAGGGGGAGAGA
CAGCTAGGGGCATTAACGGCGACGGTGTTGTGTTGGCGGGGACGGAAGAT
GCTGCAGCGCAGGTGAAGGGATTGGCCGAGGATGAAGGAAGCGATTCCAC
GACCAGCTTGGCAGCGATAGTTGAGCAGGTGAAGGGATTGGCCGAGGATG
AAGGAAGCGATTCCACGACCAGCTTGGCAGCGATAGTTGAGCAGGGCCGT
GCTAAGATCGAACGCCTGCAGGCCGAAGCCAACCGGATCTCCGTAGATCT
CGGTGACACCACTGCACCGATAGCCGACAGGATATCCACCGGTGCCGCCG
GTCTCCCCGAGGTCGCCGCGGACCGGTCCAAGAGTGTCGACTTGTCCGGC
AGCGGCCTAACGGTGGTTCAGGATTCCGCTGGGAAAAGTTCGGAGCGATT
CGGGCGCGGGGCGGACGAAGCGCTGTCTGGGTTACGGCGGGGTGGAAAGA
CGGTGACGCAGGGAGTTTCACGGCTGTCCAAGATCGCCACTGTTGATGCG
AATGGCGTGGCTGAGTCGTTAGGGGGCGGGGTGACTTCTGGGGTGCCGGA
GGTGCGAACCGAGGGTTCTGCTTTTTCCTCGCAGGGCCGTGCTAAGATCG
AACGCCTGCAGGCCGAAGCCAACCGGATCTCCGTAGATCTCGGTGACACC
ACTGCACCGATAGCCGACAGGATATCCACCGGTGCCGCCGGTCTCCCCGA
GGTCGCCGCGGACCGGTCCAAGAGTGTCGACTTGTCCGGCAGCGGCCTAA
CGGTGGTTCAGGATTCCGCTGGGAAAAGTTCGGAGCGATTCGGGCGCGGG
GCGGACGAAGCGCTGTCTGGGTTACGGCGGGGTGGAAAGACGGTGACGCA
GGGAGTTTCACGGCTGTCCAAGATCGCCACTGTTGATGCGAATGGCGTGG
CTGAGTCGTTAGGGGGCGGGGTGACTTCTGGGGTGCCGGAGGTGCGAACC
GAGGGTTCTGCTTTTTCCTCGCAGGTGGGCGACTTGGCGAGCCGAGCCGC
GTCGCAAGCCGCCGACACCCTGGCCGCCACGACGAGCCAACTCTCGACCC
AAATCTCCGACAGCCTGGCACGTCTCTCACCGCCGGAGCTAGACCTCAGC
TTGAACAAGGCCGCCGAGGCTGCTCGAAACACGCTAGCGCGGGTCTCCGA
CATTACTTCTTTCTTTCCCGATGGCTCCCCGGCGGCGGCAACAACTGCAG
ATGCTAGGAAGTTTGTCGCGAAGGTTCGATCAGCCGTTACCACCGCCCTC
GGCAGCAGCGGTGGCGGTAGCGGCGGCGGGTTAAATACTCCCGGGGAGAA
AGACCTAGAGTACATCGCGGCGGCCGCCGCGTTGTCGACGGCCGTTTTGG
CGGCGAGGGGTGCCGGCGGTGCGAGGGCGCGCGCGCAGGGTGTGGGCGAC
TTGGCGAGCCGAGCCGCGTCGCAAGCCGCCGACACCCTGGCCGCCACGAC
GAGCCAACTCTCGACCCAAATCTCCGACAGCCTGGCACGTCTCTCACCGC
CGGAGCTAGACCTCAGCTTGAACAAGGCCGCCGAGGCTGCTCGAAACACG
CTAGCGCGGGTCTCCGACATTACTTCTTTCTTTCCCGATGGCTCCCCGGC
GGCGGCAACAACTGCAGATGCTAGGAAGTTTGTCGCGAAGGTTCGATCAG
CCGTTACCACCGCCCTCGGCAGCAGCGGTGGCGGTAGCGGCGGCGGGTTA
AATACTCCCGGGGAGAAAGACCTAGAGTACATCGCGGCGGCCGCCGCGTT
GTCGACGGCCGTTTTGGCGGCGAGGGGTGCCGGCGGTGCGAGGGCGCGCG
CGCAGGGT
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