mRNA_H-paniculata_contig3879.10126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3879.10126.1
Unique NamemRNA_H-paniculata_contig3879.10126.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3879.10126.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.990e-33
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1 
Query:    1 LPVGVGPKLAAGFGVGERYPQKVWANVKEQLDRRHTVSLRSARRSGPPSNFTPTKQARIREIFANNRTLTVEQLSSKLAKVGLEVGSSMLHNWLKAMGVTRVQQRITPSLSFHHKKNRVDFILNQVARDHRTFKTGFNTIHVDKTCFYLIRDKDKVRMFPGEE 489
            +P GV   +   +GVG++YP ++W  VK Q+D    + L +  RSG PS  TP+K A ++ + + NR+ T+ Q+S +L  +GLE G   +  W   +G  +   RI PSLS   K++R+DFI ++V      +    N +H+D++ FYL+R+K+KVR+F GE+
Sbjct:   16 IPKGVLDPICERYGVGKKYPSELWKRVKTQIDNTQELDLSNEERSGRPSLLTPSKIAALKTVNSQNRSSTLRQVSDQLTDLGLEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGED 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3879.10126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.990e-3337.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3879contigH-paniculata_contig3879:11560..12063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930189.5947907-CDS-H-paniculata_contig3879:11559..120631622930189.5947907-CDS-H-paniculata_contig3879:11559..12063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3879 11560..12063 +
1691481184.336671-CDS-H-paniculata_contig3879:11559..120631691481184.336671-CDS-H-paniculata_contig3879:11559..12063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3879 11560..12063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3879.10126.1prot_H-paniculata_contig3879.10126.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3879 11560..12063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3879.10126.1

>prot_H-paniculata_contig3879.10126.1 ID=prot_H-paniculata_contig3879.10126.1|Name=mRNA_H-paniculata_contig3879.10126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
LPVGVGPKLAAGFGVGERYPQKVWANVKEQLDRRHTVSLRSARRSGPPSN
FTPTKQARIREIFANNRTLTVEQLSSKLAKVGLEVGSSMLHNWLKAMGVT
RVQQRITPSLSFHHKKNRVDFILNQVARDHRTFKTGFNTIHVDKTCFYLI
RDKDKVRMFPGEEKIST*
back to top

mRNA from alignment at H-paniculata_contig3879:11560..12063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3879.10126.1 ID=mRNA_H-paniculata_contig3879.10126.1|Name=mRNA_H-paniculata_contig3879.10126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=504bp|location=Sequence derived from alignment at H-paniculata_contig3879:11560..12063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCGGTGGGCGTTGGGCCTAAACTTGCAGCGGGTTTTGGAGTGGGAGA
GAGGTATCCTCAGAAAGTATGGGCAAACGTGAAGGAACAACTGGATAGGA
GGCACACGGTCTCTCTGAGATCAGCACGACGATCTGGACCGCCGTCGAAC
TTCACACCCACGAAACAAGCCAGGATTCGGGAAATTTTCGCGAATAATCG
CACGTTGACCGTCGAACAACTCTCCTCCAAGCTAGCCAAAGTGGGTCTCG
AAGTCGGCAGCTCGATGCTTCACAACTGGCTGAAGGCCATGGGAGTAACG
AGGGTTCAGCAGCGCATCACCCCAAGCCTTTCTTTCCACCACAAGAAGAA
CCGGGTGGACTTCATCCTGAACCAGGTCGCCCGCGATCACAGAACGTTCA
AAACTGGCTTCAACACGATTCATGTCGACAAAACGTGCTTCTACCTGATC
CGCGACAAAGACAAGGTGCGGATGTTCCCGGGAGAGGAGAAGATCAGCAC
ATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3879:11560..12063+

>mRNA_H-paniculata_contig3879.10126.1 ID=mRNA_H-paniculata_contig3879.10126.1|Name=mRNA_H-paniculata_contig3879.10126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig3879:11560..12063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCGGTGGGCGTTGGGCCTAAACTTGCAGCGGGTTTTGGAGTGGGAGA
GAGGTATCCTCAGAAAGTATGGGCAAACGTGAAGGAACAACTGGATAGGA
GGCACACGGTCTCTCTGAGATCAGCACGACGATCTGGACCGCCGTCGAAC
TTCACACCCACGAAACAAGCCAGGATTCGGGAAATTTTCGCGAATAATCG
CACGTTGACCGTCGAACAACTCTCCTCCAAGCTAGCCAAAGTGGGTCTCG
AAGTCGGCAGCTCGATGCTTCACAACTGGCTGAAGGCCATGGGAGTAACG
AGGGTTCAGCAGCGCATCACCCCAAGCCTTTCTTTCCACCACAAGAAGAA
CCGGGTGGACTTCATCCTGAACCAGGTCGCCCGCGATCACAGAACGTTCA
AAACTGGCTTCAACACGATTCATGTCGACAAAACGTGCTTCTACCTGATC
CGCGACAAAGACAAGGTGCGGATGTTCCCGGGAGAGGAGAAGATCAGCAC
ATAACTCCCGGTGGGCGTTGGGCCTAAACTTGCAGCGGGTTTTGGAGTGG
GAGAGAGGTATCCTCAGAAAGTATGGGCAAACGTGAAGGAACAACTGGAT
AGGAGGCACACGGTCTCTCTGAGATCAGCACGACGATCTGGACCGCCGTC
GAACTTCACACCCACGAAACAAGCCAGGATTCGGGAAATTTTCGCGAATA
ATCGCACGTTGACCGTCGAACAACTCTCCTCCAAGCTAGCCAAAGTGGGT
CTCGAAGTCGGCAGCTCGATGCTTCACAACTGGCTGAAGGCCATGGGAGT
AACGAGGGTTCAGCAGCGCATCACCCCAAGCCTTTCTTTCCACCACAAGA
AGAACCGGGTGGACTTCATCCTGAACCAGGTCGCCCGCGATCACAGAACG
TTCAAAACTGGCTTCAACACGATTCATGTCGACAAAACGTGCTTCTACCT
GATCCGCGACAAAGACAAGGTGCGGATGTTCCCGGGAGAGGAGAAGATCA
GCACATAA
back to top