mRNA_H-paniculata_contig38727.10117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A6H5LFZ8_9PHAE (Diaminopimelate epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LFZ8_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.490e-42 Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVVR 243
+V++R H+KMVVWERGCGITQACGTGACALVVA+VL GLADR+CTVTLPGGDL IEWRESDGKVYMTGPA+LAF GDAVVR
Sbjct: 253 QVLNRGHVKMVVWERGCGITQACGTGACALVVASVLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQGDAVVR 333
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A835YU85_9STRA (Diaminopimelate epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU85_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.280e-35 Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVVR 243
+V+SR HLKM VWERG G T ACGTGACALVVAAVLNGLADR+CTVTLPGGDL+I+WRE+D KVYMTGPA F+G V+
Sbjct: 224 QVLSRSHLKMKVWERGAGATLACGTGACALVVAAVLNGLADRKCTVTLPGGDLVIDWREADNKVYMTGPATPVFSGSVRVQ 304
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A8J5XME3_DIALT (Diaminopimelate epimerase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XME3_DIALT) HSP 1 Score: 125 bits (314), Expect = 2.100e-33 Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
KV+SR HL+M VWERG G T ACGTGACAL+VAAVLNGLA+R+ TV+LPGGDL IEWRESDGK+ MTGPA+LA+TG
Sbjct: 227 KVLSRTHLQMRVWERGAGATLACGTGACALLVAAVLNGLAERRATVSLPGGDLEIEWRESDGKITMTGPAELAYTG 302
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A0D2IWC9_9CHLO (Diaminopimelate epimerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IWC9_9CHLO) HSP 1 Score: 115 bits (289), Expect = 9.020e-32 Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVV 240
+V++R H++MVVWERG G T ACGTGACA VVA VL G DRQC V LPGG L IEWRESD +YMTGPA+LAF+G V
Sbjct: 37 EVLTRSHVRMVVWERGAGRTLACGTGACATVVAGVLEGKVDRQCRVDLPGGPLHIEWRESDNHIYMTGPAELAFSGSVPV 116
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A7S0NVQ4_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NVQ4_9EUKA) HSP 1 Score: 114 bits (286), Expect = 1.660e-31 Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
+V+SR HLKM VWERG G T ACGTGACAL+VAAVL GLA+R TV+LPGGDLLI+WRE KVYMTGPA F G
Sbjct: 22 QVLSRTHLKMKVWERGAGPTLACGTGACALLVAAVLGGLAERTATVSLPGGDLLIDWREDSNKVYMTGPAVPVFDG 97
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A7S2GTM2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GTM2_9EUKA) HSP 1 Score: 115 bits (287), Expect = 1.090e-30 Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
+V+S HLKMVVWERG G T ACGTGACAL VAAVL G A+R CTV+LPGGDL IEW E+D K+YMTGPA+ F G
Sbjct: 100 QVLSPTHLKMVVWERGAGPTLACGTGACALTVAAVLAGKAERSCTVSLPGGDLEIEWSEADNKIYMTGPAERVFAG 175
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A7N0U528_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U528_KALFE) HSP 1 Score: 114 bits (284), Expect = 2.230e-30 Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDA 234
+V+S HLKM VWERG G T ACGTGACALVVAAVL G A RQCTV LPGG L IEWRE+D +YMTGPA++ + G A
Sbjct: 88 QVLSPTHLKMRVWERGAGATLACGTGACALVVAAVLEGRASRQCTVDLPGGPLEIEWREADNHIYMTGPAEVVYYGSA 165
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A2K1JXK3_PHYPA (Diaminopimelate epimerase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JXK3_PHYPA) HSP 1 Score: 119 bits (297), Expect = 2.530e-30 Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVVR 243
+V SR+HLKM VWERG G TQACGTGACA+VVAAV G A+R+CTV LPGG L IEWRESD +YMTGPAK F G V+
Sbjct: 299 EVFSRNHLKMRVWERGAGATQACGTGACAVVVAAVKEGRAERRCTVDLPGGPLEIEWRESDNHIYMTGPAKRVFQGTVVLE 379
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A0A9CS69_ARUDO (Pco102509 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CS69_ARUDO) HSP 1 Score: 111 bits (278), Expect = 5.690e-30 Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAV 237
+V+SR HLKM VWERG G T ACGTGACA+V+AAVL G A+R+C V LPGG L IEWRE D VYMTGPA+ F G +
Sbjct: 47 QVLSRSHLKMRVWERGAGATLACGTGACAVVIAAVLEGRAERKCIVDLPGGPLEIEWREDDNHVYMTGPAEAIFYGSII 125
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: UPI000B8C7317 (diaminopimelate epimerase, chloroplastic-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C7317) HSP 1 Score: 113 bits (283), Expect = 5.870e-30 Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
+V SR HLKM VWERG G T ACGTGACA+VVAAVL G +DR+CTV LPGG L IEWRE D VYMTGPA++ F G
Sbjct: 111 EVFSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGHSDRKCTVDLPGGPLDIEWREEDNHVYMTGPAEVVFYG 186 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig38727.10117.1 >prot_H-paniculata_contig38727.10117.1 ID=prot_H-paniculata_contig38727.10117.1|Name=mRNA_H-paniculata_contig38727.10117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDback to top mRNA from alignment at H-paniculata_contig38727:484..729+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig38727.10117.1 ID=mRNA_H-paniculata_contig38727.10117.1|Name=mRNA_H-paniculata_contig38727.10117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig38727:484..729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig38727:484..729+ >mRNA_H-paniculata_contig38727.10117.1 ID=mRNA_H-paniculata_contig38727.10117.1|Name=mRNA_H-paniculata_contig38727.10117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig38727:484..729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |