mRNA_H-paniculata_contig38369.10050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38369.10050.1
Unique NamemRNA_H-paniculata_contig38369.10050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A4Y9YHS6_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YHS6_9AGAM)

HSP 1 Score: 78.6 bits (192), Expect = 3.070e-15
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    4 GNTILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQ 210
            G TIL  DN+SAM +++    H RT+HI VR H +RE + EGIL L+YV TG+Q+AD+LTKGL R K +
Sbjct: 1348 GPTILLMDNQSAMAIARNPAFHARTKHIDVRHHFLREKVEEGILDLEYVPTGEQVADVLTKGLPREKHE 1416          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A1X1QSA8_9GAMM (Uncharacterized protein n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. M TaxID=1840537 RepID=A0A1X1QSA8_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 3.190e-15
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   10 TILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRL 216
            TI+ EDN+SAM+L+K    H R +HI +R H +R+ + +G + L Y +T D +ADILTKGL  V F+RL
Sbjct:   24 TIIHEDNQSAMSLAKNPQFHGRAKHIDIRHHFVRDKVSDGTIELNYCRTDDMVADILTKGLCNVSFERL 92          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   10 TILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRL 216
            T L  DNKSA+ L K    H RT+HI  R+H IRE +++G +A+ Y+ TG+QLADI+TK L RVKFQ L
Sbjct: 1352 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIAVDYIHTGEQLADIMTKALPRVKFQEL 1420          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A453SJJ3_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SJJ3_AEGTS)

HSP 1 Score: 75.5 bits (184), Expect = 2.240e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   10 TILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRL 216
            T L  DNKSA+ L K    H RT+HI  R+H IRE +++G + + Y+ TG+QLADI+TK L RVKFQ L
Sbjct:  251 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIVVDYIHTGEQLADIMTKALPRVKFQEL 319          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A4Y9XMG5_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XMG5_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 2.320e-14
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    4 GNTILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVK 204
            G TIL  DN+SAM ++     H R +HI VR H + E ++EGIL L+Y+ TG+Q+AD+LTKGL R K
Sbjct:   52 GPTILLMDNQSAMVIAWNPAFHARMKHIDVRHHFLHEKVKEGILDLEYIPTGEQVADVLTKGLPREK 118          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 73.2 bits (178), Expect = 3.300e-14
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 GNTILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRLINL 225
            G T +FEDN+SA++++K    H R +HIG+++H IRE +    + +KY +T D +ADI TKGL   KF+RL +L
Sbjct:  103 GPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203)

HSP 1 Score: 73.9 bits (180), Expect = 4.290e-14
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   10 TILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRLINL 225
            T++FEDN+S ++L+K    H R +HI +R+H  RE +    + L Y Q+ D +AD+LTKGL +VKF +L+NL
Sbjct:  179 TVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR)

HSP 1 Score: 69.7 bits (169), Expect = 6.450e-14
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   16 LFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRL 216
            L+ DN SA+N+SK    H RT+HI +R H IR+ + EG++ L+++ T +QLADI TK L  V+F++L
Sbjct:   11 LYCDNLSAINISKNPIQHSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEKL 77          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A453LP72_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LP72_AEGTS)

HSP 1 Score: 74.3 bits (181), Expect = 9.170e-14
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   25 DNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQRL 216
            DNKSA+ L K S  H R++HI VR+H IRE + EG + +++V+TGDQLADILTK L RVKF  L
Sbjct:  468 DNKSAIALCKNSVHHDRSKHIDVRYHFIRECVEEGRVTVEHVRTGDQLADILTKPLARVKFLEL 531          
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 74.3 bits (181), Expect = 9.430e-14
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 TILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLRRVKFQR 213
            T+L  DN+SAM +++    H RT+HI VR+H +RE +  G + L+YV TGDQ+AD+LTKGL + K  +
Sbjct: 1060 TLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38369.10050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9YHS6_9AGAM3.070e-1555.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A1X1QSA8_9GAMM3.190e-1549.28Uncharacterized protein n=1 Tax=Cycloclasticus sp.... [more]
UPI001E1CA6F91.070e-1455.07LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A453SJJ3_AEGTS2.240e-1453.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9XMG5_9AGAM2.320e-1452.24Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]
A0A1X7SFX4_AMPQE3.300e-1445.95Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI001AE8F2034.290e-1445.83secreted RxLR effector protein 161-like n=1 Tax=Le... [more]
A0A2K3K827_TRIPR6.450e-1447.76Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]
A0A453LP72_AEGTS9.170e-1459.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZY34_9AGAM9.430e-1448.53Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38369contigH-paniculata_contig38369:1527..1760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score79.3
Seed ortholog evalue8.6e-13
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930179.4408894-CDS-H-paniculata_contig38369:1526..17601622930179.4408894-CDS-H-paniculata_contig38369:1526..1760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38369 1527..1760 -
1691481179.5450568-CDS-H-paniculata_contig38369:1526..17601691481179.5450568-CDS-H-paniculata_contig38369:1526..1760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38369 1527..1760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38369.10050.1prot_H-paniculata_contig38369.10050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38369 1527..1760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38369.10050.1

>prot_H-paniculata_contig38369.10050.1 ID=prot_H-paniculata_contig38369.10050.1|Name=mRNA_H-paniculata_contig38369.10050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
RGNTILFEDNKSAMNLSKGSGAHCRTRHIGVRWHGIREWIREGILALKYV
QTGDQLADILTKGLRRVKFQRLINLLM*
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mRNA from alignment at H-paniculata_contig38369:1527..1760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38369.10050.1 ID=mRNA_H-paniculata_contig38369.10050.1|Name=mRNA_H-paniculata_contig38369.10050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig38369:1527..1760- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGGAACACGATATTGTTTGAGGACAATAAATCAGCTATGAATCTCAG TAAGGGATCTGGCGCACACTGCAGGACAAGGCACATCGGAGTGCGCTGGC ACGGAATTCGAGAGTGGATTCGGGAAGGAATATTGGCGTTGAAATACGTG CAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGGACTAAGGAGAGT AAAGTTTCAGAGACTAATAAATTTACTTATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38369:1527..1760-

>mRNA_H-paniculata_contig38369.10050.1 ID=mRNA_H-paniculata_contig38369.10050.1|Name=mRNA_H-paniculata_contig38369.10050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig38369:1527..1760- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGGAACACGATATTGTTTGAGGACAATAAATCAGCTATGAATCTCAG
TAAGGGATCTGGCGCACACTGCAGGACAAGGCACATCGGAGTGCGCTGGC
ACGGAATTCGAGAGTGGATTCGGGAAGGAATATTGGCGTTGAAATACGTG
CAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGGACTAAGGAGAGT
AAAGTTTCAGAGACTAATAAATTTACTTATGTGAAGGGGGAACACGATAT
TGTTTGAGGACAATAAATCAGCTATGAATCTCAGTAAGGGATCTGGCGCA
CACTGCAGGACAAGGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTG
GATTCGGGAAGGAATATTGGCGTTGAAATACGTGCAGACCGGCGATCAAC
TTGCTGACATTTTAACGAAAGGACTAAGGAGAGTAAAGTTTCAGAGACTA
ATAAATTTACTTATGTGA
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