mRNA_H-paniculata_contig11565.1003.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11565.1003.1
Unique NamemRNA_H-paniculata_contig11565.1003.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11565.1003.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.750e-9
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  514 NPLADHVDVVSNVVEFARNSGYLFVAGVSKHFKAAWG-DTPRTTSFDDMLQSPSHAAMLTETECDRYENKICPTAAAGGHLETIKWARRKG 783
            NPLAD   ++ +++ FA  +G+LFVAGVS+ ++ AWG + P  T  D  +QSPS       +    +   +C  AA+GGHL T+++AR  G
Sbjct:  726 NPLADPT-ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLG-WGPSVCARAASGGHLATLRYARALG 814
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11565.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE4.750e-939.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11565contigH-paniculata_contig11565:5070..5852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size783
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928862.2556581-UTR-H-paniculata_contig11565:5069..52791622928862.2556581-UTR-H-paniculata_contig11565:5069..5279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11565 5070..5279 +
1691480649.1037314-UTR-H-paniculata_contig11565:5069..52791691480649.1037314-UTR-H-paniculata_contig11565:5069..5279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11565 5070..5279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928862.2661238-CDS-H-paniculata_contig11565:5279..58521622928862.2661238-CDS-H-paniculata_contig11565:5279..5852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11565 5280..5852 +
1691480649.1156151-CDS-H-paniculata_contig11565:5279..58521691480649.1156151-CDS-H-paniculata_contig11565:5279..5852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11565 5280..5852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11565.1003.1prot_H-paniculata_contig11565.1003.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11565 5280..5852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11565.1003.1

>prot_H-paniculata_contig11565.1003.1 ID=prot_H-paniculata_contig11565.1003.1|Name=mRNA_H-paniculata_contig11565.1003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MNTCNGKRKMEREEDEAPRRVTQRMTAANAAADAVADAVANVQGIAAVGC
DDNSNRNIKIQFQDTKASPSAITPSGASAQQQDSTPRVPARVGAPTQTRV
RNPLADHVDVVSNVVEFARNSGYLFVAGVSKHFKAAWGDTPRTTSFDDML
QSPSHAAMLTETECDRYENKICPTAAAGGHLETIKWARRKG
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mRNA from alignment at H-paniculata_contig11565:5070..5852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11565.1003.1 ID=mRNA_H-paniculata_contig11565.1003.1|Name=mRNA_H-paniculata_contig11565.1003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at H-paniculata_contig11565:5070..5852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTCTGCTTCAGTGTTTGACAATCCCTACTCGGGTGCGCAAGCTACAA
TCTTCACCCCAGCCATACTTGGTTCACCGGAGGTGGCCATTCTCGTTCTG
ACGACAGCATCTAGTAAATTTTCCTGAAAAAATCTTCACGTACAGCGCTA
TCCGTGCTACAGCGCTCATGCTCACAGCGTAGAACAAGAGCACGAATTTG
AGCATCAGTCATGAATACTTGTAATGGAAAGCGCAAGATGGAGCGAGAGG
AAGACGAAGCACCTCGCCGTGTGACACAACGCATGACTGCCGCAAACGCT
GCTGCAGATGCTGTTGCTGACGCCGTCGCAAACGTTCAAGGTATTGCCGC
CGTGGGCTGCGATGACAACAGTAACAGGAACATTAAGATACAATTTCAGG
ATACCAAGGCATCACCTTCTGCAATCACGCCTTCCGGTGCTTCCGCACAG
CAACAAGATTCTACACCCCGTGTTCCCGCTAGGGTCGGAGCACCAACACA
GACAAGAGTGCGTAATCCGTTGGCCGATCATGTAGATGTGGTCTCCAACG
TTGTGGAGTTCGCCCGCAACAGTGGCTACCTATTCGTTGCCGGTGTATCG
AAGCACTTCAAAGCTGCCTGGGGAGACACACCACGAACGACTAGCTTCGA
CGACATGCTACAATCCCCGTCACACGCTGCCATGTTAACGGAGACGGAGT
GCGACCGGTACGAAAACAAGATCTGCCCCACGGCGGCCGCGGGCGGTCAT
CTGGAGACCATCAAGTGGGCTCGGAGAAAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11565:5070..5852+

>mRNA_H-paniculata_contig11565.1003.1 ID=mRNA_H-paniculata_contig11565.1003.1|Name=mRNA_H-paniculata_contig11565.1003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig11565:5070..5852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACTTGTAATGGAAAGCGCAAGATGGAGCGAGAGGAAGACGAAGC
ACCTCGCCGTGTGACACAACGCATGACTGCCGCAAACGCTGCTGCAGATG
CTGTTGCTGACGCCGTCGCAAACGTTCAAGGTATTGCCGCCGTGGGCTGC
GATGACAACAGTAACAGGAACATTAAGATACAATTTCAGGATACCAAGGC
ATCACCTTCTGCAATCACGCCTTCCGGTGCTTCCGCACAGCAACAAGATT
CTACACCCCGTGTTCCCGCTAGGGTCGGAGCACCAACACAGACAAGAGTG
CGTAATCCGTTGGCCGATCATGTAGATGTGGTCTCCAACGTTGTGGAGTT
CGCCCGCAACAGTGGCTACCTATTCGTTGCCGGTGTATCGAAGCACTTCA
AAGCTGCCTGGGGAGACACACCACGAACGACTAGCTTCGACGACATGCTA
CAATCCCCGTCACACGCTGCCATGTTAACGGAGACGGAGTGCGACCGGTA
CGAAAACAAGATCTGCCCCACGGCGGCCGCGGGCGGTCATCTGGAGACCA
TCAAGTGGGCTCGGAGAAAGGGGATGAATACTTGTAATGGAAAGCGCAAG
ATGGAGCGAGAGGAAGACGAAGCACCTCGCCGTGTGACACAACGCATGAC
TGCCGCAAACGCTGCTGCAGATGCTGTTGCTGACGCCGTCGCAAACGTTC
AAGGTATTGCCGCCGTGGGCTGCGATGACAACAGTAACAGGAACATTAAG
ATACAATTTCAGGATACCAAGGCATCACCTTCTGCAATCACGCCTTCCGG
TGCTTCCGCACAGCAACAAGATTCTACACCCCGTGTTCCCGCTAGGGTCG
GAGCACCAACACAGACAAGAGTGCGTAATCCGTTGGCCGATCATGTAGAT
GTGGTCTCCAACGTTGTGGAGTTCGCCCGCAACAGTGGCTACCTATTCGT
TGCCGGTGTATCGAAGCACTTCAAAGCTGCCTGGGGAGACACACCACGAA
CGACTAGCTTCGACGACATGCTACAATCCCCGTCACACGCTGCCATGTTA
ACGGAGACGGAGTGCGACCGGTACGAAAACAAGATCTGCCCCACGGCGGC
CGCGGGCGGTCATCTGGAGACCATCAAGTGGGCTCGGAGAAAGGGG
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