mRNA_H-paniculata_contig11564.1001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11564.1001.1
Unique NamemRNA_H-paniculata_contig11564.1001.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: UPI001652F407 (uncharacterized protein LOC110905727 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652F407)

HSP 1 Score: 171 bits (432), Expect = 4.860e-43
Identity = 135/421 (32.07%), Postives = 198/421 (47.03%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTET--EDW----ASASEMPPILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSR--TEAQRPXXXXXXXXXXXXXXXXXEDPGAT----------------------ARVAKAKGTGNLTEAAEK--WRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDF 1167
            TPQQNGVAER  R I EIARA +  A++  ++W E + +AVY +NR P++  N  TPYE   G TP  DH+RVFGC  Y      +  K + +   GV +GY   +   ++Y+ E+K V ++R+V+F                     EDCF      P +  S  + +  S  E   +DW    A  +E P   P  + P    NP    SD      + N +     P + DAP      P     TT+ +R  T+ QR                   D  A+                      + +       N  +A++   WR  +EKE  AL DNG W  E+   LP+G+KAI +KWI+K K + D +  RYKARLVA+G++Q+EG D+ +T  PVA++ T RT+ +LA + ++
Sbjct:  580 TPQQNGVAERKHRHILEIARAIRFEASLPVKFWGECILTAVYVINRIPSKSLNNKTPYEVLLGTTPTYDHMRVFGCLTYHWNYDTKGDKFEPRGRRGVFVGYPYGTKGYKVYDLEDKKVVITRHVKF--------------------FEDCF------PYLNDSDQKIKVTSTLEERDQDWWQGGAFFNEGPSDHPNDAGPIND-NPMGPQSDEGPAPLDENQETHTPFP-LHDAP------PEPQPVTTRSTRIRTQPQRLRDYSVQLPPSVNHVNPPPDQAASTVHPLTYYLSYDNFSSNHKAFLSAIDSCHEPKNFIQASQDPLWREAMEKEVKALQDNGTWTLEE---LPSGKKAIDSKWIYKIKHRPDGTIDRYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRTLLALAVKKNW 963          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 168 bits (425), Expect = 2.690e-42
Identity = 124/391 (31.71%), Postives = 182/391 (46.55%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSA---NPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEKWRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHD 1164
            +PQQNGVAER  RS+ E+ R     A + ++YW EA+ +AVY  N +PT+P N  TPYE WHG  PK++HLR+FGC A+      +R+KL   A     LGY  D  + R+ +     + +SR+V+F E+ +    R + + +                  TR  ++  Q  + +T    +  E P  + T + P           ++S+ D           D EP     P+ G        N  K                          E P   +   ++      TE+   WRA +++E  AL  N  WE     RLP GRKA+  KW +KRK  E+    RYKARLVAQG+SQ  G+D+ E   PV R +TFRT+ +LA++ +
Sbjct:  133 SPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRLLDKTTNEIHISRDVKFIEK-APCSERAKHDRE------------------TRHQSKKPQEIIIDT----TLKENPITIETQAEPEVQPAFEETREIVSEID----------SDTEPRRSTRPTKGIPPDRLMANVIKHQ-----------------------IEQPHTYSEAIES------TESTA-WRAAMQEEINALQGNDTWELV---RLPLGRKAVGCKWTYKRKENENGEIVRYKARLVAQGYSQKFGQDYDEVFAPVIRQATFRTILTLASKQN 456          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A5N6LNQ3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LNQ3_9ASTR)

HSP 1 Score: 164 bits (414), Expect = 7.860e-41
Identity = 124/395 (31.39%), Postives = 180/395 (45.57%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGH-RGQQEH--DGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEK--WRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TP+ NGV ER  R++  + R+      +   +W E V +AVY LNR+PT+     TP E+W G  P + HLR+FG  AY +   Q R+KLD ++   V +GY + S   R+YNP +K   + ++V FDE  +   +  G +EH  D T  + D F   PV    TR+H+         T    + S    + P  +LP  S +P        Y  N   S   + E                       S+T  +R                  E       V         +EAA K  W+  +++E  AL  N  W+  D   LP G+ A+  KW +K K+  D   +RYKARLVA+G+SQ+EG D+ ET  PVAR  T R V ++AA   ++
Sbjct:   87 TPEHNGVVERKNRTVMGLTRSMLKQKELPNNFWAEGVATAVYLLNRSPTKSKPNKTPIEEWGGLRPTVHHLRIFGSIAYGLIPPQSRQKLDHRSEKCVFVGYSQQSSGYRLYNPISKKFSVQKHVTFDENGAWKWNSEGTKEHVMDHTPFL-DPFPVDPVD-NDTRNHSSTPTTPTQTTVPIQTISHNATLTPLTTLPRHSQDP--------YAHNPSTSSHSNPE----------------------TSQTLTKRISKPPSWLQDYHTDVVEEETQLFALNVYDPI---TFSEAATKVEWQLAMKEEIAALRKNTTWDLTD---LPEGKNAVGVKWTYKTKVGPDGEVSRYKARLVAKGYSQIEGIDYTETFAPVARFETIRVVIAIAAHRGWK 443          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A5N6NKC8_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NKC8_9ASTR)

HSP 1 Score: 163 bits (412), Expect = 1.700e-40
Identity = 129/398 (32.41%), Postives = 183/398 (45.98%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGH-RGQQEH--DGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPP---ILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEK--WRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TP+ NGV ER  R+I  + R+      +   +W E V +AVY LNR+PT+     TP E+W G  P + HLR+FG  AY +   Q R KLD ++   V +GY + S   R+YNP  K   + ++V FDE+ +   +  G +EH  D T  + D F   PV P    +H+     S+T T+       + P   + P  +LP  S +P        Y  N   S   + E                    T Q+RT+  R                  E       V          EAA K  W+  +++E  AL  N  W+  D   LP G+ A+  KW +K K+  D   +RYKARLVA+G+SQVEG D+ ET  PVAR  T R V ++AA   ++
Sbjct:   87 TPEHNGVVERKNRTIMGLTRSMLKQKELPNSFWAEGVATAVYLLNRSPTKSKPNKTPIEEWGGLKPTVHHLRIFGSIAYSLIPPQNRHKLDHRSEKCVFVGYSQQSSGYRLYNPITKRFSVQKHVTFDEDGAWRWNSEGTKEHVTDPTHFL-DPF---PVEP-ADNNHSH---TSLTPTQTTVPTQIISPNATLTPLTTLPGHSQDP--------YAHNPSTSSHTNPE--------------------TSQTRTK--RVSKPPSWLQDYHTDAVEEETQLFVLNVCDPI---TFYEAAPKAEWQLAMKEEIAALKKNNTWDLTD---LPEGKNAVGVKWTYKTKVGPDGEVSRYKARLVAKGYSQVEGIDYTETFAPVARFETIRVVIAIAAHRGWK 440          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A151TVS9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TVS9_CAJCA)

HSP 1 Score: 162 bits (411), Expect = 3.180e-40
Identity = 118/392 (30.10%), Postives = 166/392 (42.35%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEK--WRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TPQQNGVAER  R+I ++ R       M R +W EAV +AVY LNR PT+     TP E W G  P + HL++FGC AY     Q R+KLDDK    + +GY  +S + ++YNP  K V +SR+V FDEE                                               DW+  ++  P++          NP +      Y E NG+      EP                      SR + QR                  ++      +          EA+    WR  +++E  A+  N  WE  D   LPA +K I  KW++K K K      R KARLV +G+ Q  G D+FE   PVAR+ T R + SL+A+++++
Sbjct:  515 TPQQNGVAERKNRTIMDMVRCMLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKPSIRHLKIFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVTFDEEGMW--------------------------------------------DWSFKAQKEPVI----------NPEN------YEEENGHVNPTPDEPET-------------------SSRPQRQRRLPARLEDYVVGNDNDPSDEEIINFALFADCEPVTFEEASNNQYWRKAMDEEIHAIEKNQTWELTD---LPADKKPIGVKWVYKTKYKSSGEIDRLKARLVVKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWK 824          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A540MY60_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MY60_MALBA)

HSP 1 Score: 162 bits (409), Expect = 3.340e-40
Identity = 126/394 (31.98%), Postives = 183/394 (46.45%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKG----TGNLTEAAEKWRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TPQQNGVAER  R+I  + R       + + +W EAV  AVY LNR+PT    G TP + W G  P +DH RVFGC +++     +R KLDDK+   V++G  E+S + R+++  ++ + +SR+V F+E++               N ++ +                EQA +T+ E W +           S          V+ D                  +ED  S       + G+T+++ RT  +RP                 E+  + A +A        T   T  +EKWR  +++E  A+  N  WE  D   LP G K I  KW+FK KL E+    +YKA LVA+G+SQ  G DF E   PVARM T R V SLAA+  +E
Sbjct:  308 TPQQNGVAERKNRTIMNMVRCMLSEKQIPKTFWPEAVNWAVYVLNRSPTLAVKGKTPEKAWSGHKPSVDHFRVFGCISHVHIPDSKRVKLDDKSLKCVLMGVSEESKAYRLFDLISQKIIISRDVVFEEDEQW-------------NWDEVY----------------EQAVLTDLE-WETXXXXXXXXXEGS---------GVIED------------------IEDDESHEVGEAMTEGSTSQERRT--RRPPTWMRDYETGEGLSD--EENVSMAHLALFTNGDPTTYYDTVKSEKWRQAMQQEIEAIEKNDTWELTD---LPPGGKTIGVKWVFKTKLNENGEVDKYKAWLVAKGYSQQYGIDFSEVFAPVARMDTIRMVISLAAQRSWE 637          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: UPI000D0CBDB3 (uncharacterized protein LOC100822297 isoform X1 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0CBDB3)

HSP 1 Score: 159 bits (401), Expect = 3.410e-40
Identity = 122/397 (30.73%), Postives = 189/397 (47.61%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRG-QQEHDGTRNMEDC------FSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEKWRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TPQQNGV ER  +++  +AR+   + NM    W E V +AVY LNR+PT+     TPYE W    P ++HLR+FGC AY         KL DKA   V+LGY+ ++ + R+Y+P  K+  +SR+V FDEE      +  ++E++  +++         FS      T+    +  ++A+  E  ++    E PP  P  S P T     +V+ D  +                ED  SA    P   G    Q   +   P                 ++P   + V++AK   +       W+  +E+E  ++++N  W   D   LPAG+K I  KW+FK K        ++KARLVA+G+ Q +G D+ E   PVAR+ T R + + AA+  +E
Sbjct:   49 TPQQNGVVERRNQTVVGMARSLLKSKNMPGTLWGEVVSTAVYILNRSPTKSVENKTPYEAWFKRKPNIEHLRIFGCVAYAKVTKLNLSKLADKATRTVMLGYETNTKAYRLYDPATKNAIVSRDVVFDEEKGWDWSKVLEKENERAKDIFTVTYPAVVFSRTEHDDTIQSEPSTSKKATTNENSEFEPTIEEPPAAP--STPGTPQ--MTVVDDEKH----------------EDQGSASEVGPQ--GYRNIQELMDIAPPCNLEDEELYFIGT----DEP---SPVSEAKQNSS-------WKHAMEEELKSILENDTWNMVD---LPAGQKPIGLKWVFKLKKDPSGKIVKHKARLVAKGYVQRKGVDYDEVFAPVARLETVRMLAARAAQEGWE 406          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A1J3H758_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H758_NOCCA)

HSP 1 Score: 162 bits (409), Expect = 4.780e-40
Identity = 121/403 (30.02%), Postives = 195/403 (48.39%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQE-HDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATS-ANPFSVLSDGDYGENNGNSKMKDAEPSVEDAP-----SAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEK------WRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TPQQNGVAER  R + E+AR+     N+ +R+W +AV +A Y +NR PT+  N  +P++  +   P +D+LRVFGC  +++   +QR KLD K+  G+ +GY  +    + Y PE + V +SR+V+F E       +  +E  D + +  D  +T  V     R     EQ          S  E      +H    +S +N    LS+G+  E   + ++   +P++++ P     S     P++  NT     + A+                     P A      A   G + ++ E+      W   ++ E  A+  N  W+  D   LP G+KA+ +KW+F  K        R+KARLVA+GF+Q  G+D+F+T  PVA++ T R V +LAA  D++
Sbjct:  111 TPQQNGVAERKNRHLMEVARSMMFHTNVPKRFWGDAVVTACYLINRIPTKILNDLSPFKVLNQTEPSIDYLRVFGCVCFVLIPGEQRNKLDAKSTKGMFIGYSINQKGYKCYIPETRRVVVSRDVKFIESKGYYEEKNWEELKDLSYSSSDRTATLRVLLESLRDGVSQEQIPTHPISQTISNDEPQDQGTSHDATNSSESNDDEALSNGEQDEPQNSVEV---QPTLQEEPPVLRRSQRIRKPSNWVNTQVYYNSNAEAHPIQATCSLAFI--------PQAHQAYINALDNGAIPQSYEEAMELMVWIDAVDDETQAMERNHTWDEAD---LPKGKKAVTSKWVFTIKYLSTGEIERHKARLVARGFTQTYGQDYFDTFAPVAKLHTVRVVLALAANLDWD 499          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A151SW32_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SW32_CAJCA)

HSP 1 Score: 161 bits (408), Expect = 6.840e-40
Identity = 117/390 (30.00%), Postives = 165/390 (42.31%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEAQRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEKWRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            TPQQNGVAER  R+I ++ R       M R +W EAV +AVY LNR PT+     TP E W G  P + HL++FGC AY     Q R+KLDDK    + +GY  +S + ++YNP  K V +SR+V FDEE                                               DW+  ++  P++          NP +      Y E NG+      EP     P              +Q R  A+                       A       +   N     + WR  +++E  A+  N  WE  D   LPA ++ I  KW++K K K      R KARLVA+G+ Q  G D+FE   PVAR+ T   + SL+A+++++
Sbjct:  590 TPQQNGVAERKNRTIMDMVRCMLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKPSIRHLKIFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVTFDEEGMW--------------------------------------------DWSFKAQKEPVI----------NPEN------YEEENGHVNPTPDEPETSSRPQ-------------RQRRLPARLEDYVVGNDNDPSDEEIINFALFADCEPVTFEEASNN----QHWRKAMDEEIHAIEKNQTWELTD---LPADKRPIGVKWVYKTKYKSSGEIDRLKARLVAKGYKQKPGIDYFEVFAPVARLDTIHMLISLSAQNNWK 899          
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Match: A0A537QRN8_9PROT (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QRN8_9PROT)

HSP 1 Score: 159 bits (403), Expect = 3.650e-39
Identity = 129/397 (32.49%), Postives = 189/397 (47.61%), Query Frame = 1
Query:    1 TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVILGYDEDSPSC-RIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMEDCFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMP---PILPTHSLPATSANPFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTEA---QRPXXXXXXXXXXXXXXXXXEDPGATARVAKAKGTGNLTEAAEKWRATLEKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKARLVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE 1170
            T  QNGV+ER  RSI E AR     A++G R+W EAV +AVY LNR+PTR   G TPYE W+G  P L HLR FGC A++    ++R+KL  K+   V+LGY  ++    R+++P  +S+  + NV FDEE++           GT  +E   ++P         +A  E+A  T+   + S  +M     ++ +H    T+    +V                    +V DA    T       N T  S+  A   +R                  +D   +             E A+ W+  +++E  +L  N  W  E   RLP  RKAI  +W+FK+K+  D+S  RYKARLV +G+ Q E  D+ ET  PVA   T R + +LAA+ D+E
Sbjct:  625 TQNQNGVSERKIRSIVEKARCMLHDASLGARFWAEAVSTAVYLLNRSPTRALEGQTPYEAWYGSRPSLHHLRRFGCNAFVHVPPEKRKKLQAKSRCCVMLGYVHNTTKLWRVWDPVQRSIVNAANVVFDEENASAA--------GTL-LEQAMTSP---------NALLEEADETQDGVFESDDDMTMDLDVMGSHEHMITTPVHSAVXXXXXXXXXXXXXXXXXXXEAV-DADRQSTRREPVNSNVTAPSQESADVLRRSTRTRLPPKWHSMFMAQVQD--HSDEPTSYWDAVGCAEHAQ-WQKAIDEEYASLQKNSTWSLE---RLPPNRKAIACRWVFKKKINADNS-IRYKARLVIKGYEQRESIDYDETFAPVAMFKTLRILLALAAQEDWE 995          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11564.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001652F4074.860e-4332.07uncharacterized protein LOC110905727 n=1 Tax=Helia... [more]
A0A2M4CK12_ANODA2.690e-4231.71Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A5N6LNQ3_9ASTR7.860e-4131.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NKC8_9ASTR1.700e-4032.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A151TVS9_CAJCA3.180e-4030.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A540MY60_MALBA3.340e-4031.98Integrase catalytic domain-containing protein n=1 ... [more]
UPI000D0CBDB33.410e-4030.73uncharacterized protein LOC100822297 isoform X1 n=... [more]
A0A1J3H758_NOCCA4.780e-4030.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SW32_CAJCA6.840e-4030.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A537QRN8_9PROT3.650e-3932.49DDE-type integrase/transposase/recombinase (Fragme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11564contigH-paniculata_contig11564:6932..8155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score177.2
Seed ortholog evalue1.5e-41
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1173
Cds size1173
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928862.1535437-CDS-H-paniculata_contig11564:6931..72281622928862.1535437-CDS-H-paniculata_contig11564:6931..7228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11564 6932..7228 -
1691480649.0503676-CDS-H-paniculata_contig11564:6931..72281691480649.0503676-CDS-H-paniculata_contig11564:6931..7228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11564 6932..7228 -
1622928862.1696951-CDS-H-paniculata_contig11564:7279..81551622928862.1696951-CDS-H-paniculata_contig11564:7279..8155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11564 7280..8155 -
1691480649.0650952-CDS-H-paniculata_contig11564:7279..81551691480649.0650952-CDS-H-paniculata_contig11564:7279..8155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11564 7280..8155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11564.1001.1prot_H-paniculata_contig11564.1001.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11564 6932..8155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11564.1001.1

>prot_H-paniculata_contig11564.1001.1 ID=prot_H-paniculata_contig11564.1001.1|Name=mRNA_H-paniculata_contig11564.1001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=391bp
TPQQNGVAERSWRSIFEIARASKITANMGRRYWEEAVRSAVYCLNRAPTR
PHNGGTPYEKWHGETPKLDHLRVFGCTAYIMFQSQQRRKLDDKAWAGVIL
GYDEDSPSCRIYNPENKSVQLSRNVRFDEEDSVTGHRGQQEHDGTRNMED
CFSTPPVTPTVTRSHAQGEQASVTETEDWASASEMPPILPTHSLPATSAN
PFSVLSDGDYGENNGNSKMKDAEPSVEDAPSAGTAAPASGGNTTKQSRTE
AQRPRDRSPTRTRARARENREEDPGATARVAKAKGTGNLTEAAEKWRATL
EKEKGALVDNGVWESEDPGRLPAGRKAIRTKWIFKRKLKEDSSEARYKAR
LVAQGFSQVEGEDFFETSVPVARMSTFRTVFSLAAEHDFE*
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mRNA from alignment at H-paniculata_contig11564:6932..8155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11564.1001.1 ID=mRNA_H-paniculata_contig11564.1001.1|Name=mRNA_H-paniculata_contig11564.1001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig11564:6932..8155- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACCGCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCAGCATTTTCGA GATTGCAAGAGCCAGCAAGATCACCGCCAACATGGGTCGTCGATATTGGG AGGAAGCGGTGCGCTCGGCAGTGTACTGCCTAAATCGCGCCCCGACGCGA CCGCACAACGGAGGAACGCCGTACGAAAAATGGCACGGCGAGACACCAAA GTTGGACCACCTTCGCGTCTTCGGCTGCACGGCGTATATTATGTTCCAGT CGCAACAGAGACGCAAGCTCGACGACAAAGCATGGGCGGGGGTGATTTTG GGGTACGACGAGGACAGCCCGAGTTGTCGCATATATAACCCGGAAAACAA GAGCGTTCAATTGAGCAGGAACGTGAGATTTGACGAAGAGGACTCCGTAA CGGGTCATCGCGGACAGCAGGAGCACGACGGGACGCGTAACATGGAAGAT TGTTTTTCAACACCGCCAGTCACGCCAACGGTCACTCGATCCCACGCCCA AGGCGAGCAAGCAAGCGTAACTGAGACGGAAGACTGGGCATCGGCGTCAG AAATGCCGCCGATATTACCGACACATTCGCTGCCAGCCACCAGCGCAAAC CCATTCAGTGTCTTGAGCGATGGCGATTATGGCGAAAATAACGGCAACTC CAAGATGAAGGATGCGGAGCCCTCAGTCGAGGACGCACCATCAGCAGGGA CAGCCGCACCCGCGTCGGGGGGGAACACCACGAAGCAGTCGCGGACGGAG GCGCAGCGTCCGCGAGATAGGTCACCAACACGAACACGGGCGAGAGCAAG AGAAAACCGCGAAGAAGATCCAGGCGCTACCGCACGCGTGGCAAAAGCGA AAGGCACTGGCAACCTTACAGAGGCGGTATCTAAGGGGTAGCCGAAATCC GCGGCAGAAGCATTAAATGGTCCAGAGGCGGAAAAATGGCGAGCGACATT GGAGAAAGAAAAGGGGGCGTTGGTGGACAATGGGGTATGGGAAAGCGAAG ACCCGGGGAGGTTACCGGCAGGGCGCAAGGCGATTCGTACGAAATGGATT TTCAAGCGGAAACTGAAGGAGGACAGCAGCGAGGCACGCTACAAAGCGCG ACTGGTGGCTCAAGGCTTTTCCCAGGTAGAGGGTGAAGATTTCTTTGAAA CCAGTGTCCCCGTAGCTCGCATGTCGACATTTCGTACTGTTTTTAGCCTG GCCGCCGAACATGATTTCGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11564:6932..8155-

>mRNA_H-paniculata_contig11564.1001.1 ID=mRNA_H-paniculata_contig11564.1001.1|Name=mRNA_H-paniculata_contig11564.1001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2346bp|location=Sequence derived from alignment at H-paniculata_contig11564:6932..8155- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACCGCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCAGCATTTTCGA
GATTGCAAGAGCCAGCAAGATCACCGCCAACATGGGTCGTCGATATTGGG
AGGAAGCGGTGCGCTCGGCAGTGTACTGCCTAAATCGCGCCCCGACGCGA
CCGCACAACGGAGGAACGCCGTACGAAAAATGGCACGGCGAGACACCAAA
GTTGGACCACCTTCGCGTCTTCGGCTGCACGGCGTATATTATGTTCCAGT
CGCAACAGAGACGCAAGCTCGACGACAAAGCATGGGCGGGGGTGATTTTG
GGGTACGACGAGGACAGCCCGAGTTGTCGCATATATAACCCGGAAAACAA
GAGCGTTCAATTGAGCAGGAACGTGAGATTTGACGAAGAGGACTCCGTAA
CGGGTCATCGCGGACAGCAGGAGCACGACGGGACGCGTAACATGGAAGAT
TGTTTTTCAACACCGCCAGTCACGCCAACGGTCACTCGATCCCACGCCCA
AGGCGAGCAAGCAAGCGTAACTGAGACGGAAGACTGGGCATCGGCGTCAG
AAATGCCGCCGATATTACCGACACATTCGCTGCCAGCCACCAGCGCAAAC
CCATTCAGTGTCTTGAGCGATGGCGATTATGGCGAAAATAACGGCAACTC
CAAGATGAAGGATGCGGAGCCCTCAGTCGAGGACGCACCATCAGCAGGGA
CAGCCGCACCCGCGTCGGGGGGGAACACCACGAAGCAGTCGCGGACGGAG
GCGCAGCGTCCGCGAGATAGGTCACCAACACGAACACGGGCGAGAGCAAG
AGAAAACCGCGAAGAAGATCCAGGCGCTACCGCACGCGTGGCAAAAGCGA
AAGGCACTGGCAACCTTACAGAGGCGACACCGCAACAAAACGGTGTGGCG
GAGCGCAGCTGGCGCAGCATTTTCGAGATTGCAAGAGCCAGCAAGATCAC
CGCCAACATGGGTCGTCGATATTGGGAGGAAGCGGTGCGCTCGGCAGTGT
ACTGCCTAAATCGCGCCCCGACGCGACCGCACAACGGAGGAACGCCGTAC
GAAAAATGGCACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCGG
CTGCACGGCGTATATTATGTTCCAGTCGCAACAGAGACGCAAGCTCGACG
ACAAAGCATGGGCGGGGGTGATTTTGGGGTACGACGAGGACAGCCCGAGT
TGTCGCATATATAACCCGGAAAACAAGAGCGTTCAATTGAGCAGGAACGT
GAGATTTGACGAAGAGGACTCCGTAACGGGTCATCGCGGACAGCAGGAGC
ACGACGGGACGCGTAACATGGAAGATTGTTTTTCAACACCGCCAGTCACG
CCAACGGTCACTCGATCCCACGCCCAAGGCGAGCAAGCAAGCGTAACTGA
GACGGAAGACTGGGCATCGGCGTCAGAAATGCCGCCGATATTACCGACAC
ATTCGCTGCCAGCCACCAGCGCAAACCCATTCAGTGTCTTGAGCGATGGC
GATTATGGCGAAAATAACGGCAACTCCAAGATGAAGGATGCGGAGCCCTC
AGTCGAGGACGCACCATCAGCAGGGACAGCCGCACCCGCGTCGGGGGGGA
ACACCACGAAGCAGTCGCGGACGGAGGCGCAGCGTCCGCGAGATAGGTCA
CCAACACGAACACGGGCGAGAGCAAGAGAAAACCGCGAAGAAGATCCAGG
CGCTACCGCACGCGTGGCAAAAGCGAAAGGCACTGGCAACCTTACAGAGG
CGGCGGAAAAATGGCGAGCGACATTGGAGAAAGAAAAGGGGGCGTTGGTG
GACAATGGGGTATGGGAAAGCGAAGACCCGGGGAGGTTACCGGCAGGGCG
CAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACA
GCAGCGAGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGCTTTTCCCAG
GTAGAGGGTGAAGATTTCTTTGAAACCAGTGTCCCCGTAGCTCGCATGTC
GACATTTCGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAGTAGG
CGGAAAAATGGCGAGCGACATTGGAGAAAGAAAAGGGGGCGTTGGTGGAC
AATGGGGTATGGGAAAGCGAAGACCCGGGGAGGTTACCGGCAGGGCGCAA
GGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACAGCA
GCGAGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGCTTTTCCCAGGTA
GAGGGTGAAGATTTCTTTGAAACCAGTGTCCCCGTAGCTCGCATGTCGAC
ATTTCGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAGTAG
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