mRNA_H-paniculata_contig11563.1000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11563.1000.1
Unique NamemRNA_H-paniculata_contig11563.1000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11563.1000.1 vs. uniprot
Match: A0A834XC68_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834XC68_9FABA)

HSP 1 Score: 55.8 bits (133), Expect = 2.730e-7
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:    7 WNSDTGAIDHMTSDETAFEDYTPAFPWIMCEIANGNFVLMAGWGRLVLLVTAKLGRVAHVPELGCNLISTRRAT 228
            W  D+GA DHMTS+++ F    P    +  +IA G    + G G + +  T  L  V HVP L CNL+S  + T
Sbjct:   95 WIVDSGASDHMTSNDSLFSTLAPCKTSLQVKIAYGTMAKVLGIGSVKISDTITLLNVLHVPTLACNLLSISKLT 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11563.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A834XC68_9FABA2.730e-737.84Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11563contigH-paniculata_contig11563:932..1183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue4e-07
Seed eggNOG ortholog3880.AES79114
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Toll - interleukin 1 - resistance
EggNOG OGs3894N@33090,3GY0Q@35493,4JW77@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.8531263-CDS-H-paniculata_contig11563:931..10021622928860.8531263-CDS-H-paniculata_contig11563:931..1002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11563 932..1002 -
1691480649.0279634-CDS-H-paniculata_contig11563:931..10021691480649.0279634-CDS-H-paniculata_contig11563:931..1002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11563 932..1002 -
1622928860.8673997-CDS-H-paniculata_contig11563:1026..11831622928860.8673997-CDS-H-paniculata_contig11563:1026..1183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11563 1027..1183 -
1691480649.0401537-CDS-H-paniculata_contig11563:1026..11831691480649.0401537-CDS-H-paniculata_contig11563:1026..1183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11563 1027..1183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11563.1000.1prot_H-paniculata_contig11563.1000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11563 932..1183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11563.1000.1

>prot_H-paniculata_contig11563.1000.1 ID=prot_H-paniculata_contig11563.1000.1|Name=mRNA_H-paniculata_contig11563.1000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EHWNSDTGAIDHMTSDETAFEDYTPAFPWIMCEIANGNFVLMAGWGRLVL
LVTAKLGRVAHVPELGCNLISTRRAT
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mRNA from alignment at H-paniculata_contig11563:932..1183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11563.1000.1 ID=mRNA_H-paniculata_contig11563.1000.1|Name=mRNA_H-paniculata_contig11563.1000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig11563:932..1183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACTGGAACTCAGACACCGGCGCGATAGACCACATGACTTCGGATGA
GACTGCGTTCGAGGACTACACTCCAGCGTTCCCGTGGATCATGTGTGAAA
TCGCCAACGGGAACTTCGTGCTGATGGCGGGGTGGGGACGCCTTGTGCTT
CTAGTAAGTCAACCGGGGAGGAAATCATGAGCAGCAAAGTTAGGCAGGGT
TGCCCATGTACCCGAGCTCGGGTGCAATTTAATCTCCACACGCCGAGCAA
CA
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Coding sequence (CDS) from alignment at H-paniculata_contig11563:932..1183-

>mRNA_H-paniculata_contig11563.1000.1 ID=mRNA_H-paniculata_contig11563.1000.1|Name=mRNA_H-paniculata_contig11563.1000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig11563:932..1183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACTGGAACTCAGACACCGGCGCGATAGACCACATGACTTCGGATGA
GACTGCGTTCGAGGACTACACTCCAGCGTTCCCGTGGATCATGTGTGAAA
TCGCCAACGGGAACTTCGTGCTGATGGCGGGGTGGGGACGCCTTGTGCTT
CTAGTAAGAACACTGGAACTCAGACACCGGCGCGATAGACCACATGACTT
CGGATGAGACTGCGTTCGAGGACTACACTCCAGCGTTCCCGTGGATCATG
TGTGAAATCGCCAACGGGAACTTCGTGCTGATGGCGGGGTGGGGACGCCT
TGTGCTTCTAGTAACAGCAAAGTTAGGCAGGGTTGCCCATGTACCCGAGC
TCGGGTGCAATTTAATCTCCACACGCCGAGCAACACAGCAAAGTTAGGCA
GGGTTGCCCATGTACCCGAGCTCGGGTGCAATTTAATCTCCACACGCCGA
GCAACA
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