mRNA_H-paniculata_contig38028.9975.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38028.9975.1
Unique NamemRNA_H-paniculata_contig38028.9975.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38028.9975.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.520e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   31 GIGISCLSTLTLLGENTRFSCAARLWIWSGGFDLAFGALSLKLWRVLSVVE 183
            GIG++ LS   LLG  T  +CA RLW +S GFDLAFGAL+LK+    S  E
Sbjct:  177 GIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAE 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38028.9975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH00_ECTSI1.520e-854.90G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38028contigH-paniculata_contig38028:322..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.2577615-CDS-H-paniculata_contig38028:321..5191622930169.2577615-CDS-H-paniculata_contig38028:321..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38028 322..519 +
1691481175.2012177-CDS-H-paniculata_contig38028:321..5191691481175.2012177-CDS-H-paniculata_contig38028:321..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38028 322..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38028.9975.1prot_H-paniculata_contig38028.9975.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38028 322..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38028.9975.1

>prot_H-paniculata_contig38028.9975.1 ID=prot_H-paniculata_contig38028.9975.1|Name=mRNA_H-paniculata_contig38028.9975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LCSLLVLGKAGIGISCLSTLTLLGENTRFSCAARLWIWSGGFDLAFGALS
LKLWRVLSVVEVRLR*
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mRNA from alignment at H-paniculata_contig38028:322..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38028.9975.1 ID=mRNA_H-paniculata_contig38028.9975.1|Name=mRNA_H-paniculata_contig38028.9975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig38028:322..519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGTTCGCTCCTGGTTCTGGGTAAGGCCGGGATTGGAATTTCGTGCTT
GTCGACCCTAACGTTGCTGGGAGAGAATACGAGATTCTCGTGCGCCGCAA
GGCTTTGGATTTGGAGCGGCGGGTTTGATCTGGCGTTTGGAGCGCTGTCG
CTGAAGCTTTGGCGAGTGTTGAGCGTTGTCGAGGTGAGGCTACGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38028:322..519+

>mRNA_H-paniculata_contig38028.9975.1 ID=mRNA_H-paniculata_contig38028.9975.1|Name=mRNA_H-paniculata_contig38028.9975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig38028:322..519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGTTCGCTCCTGGTTCTGGGTAAGGCCGGGATTGGAATTTCGTGCTT
GTCGACCCTAACGTTGCTGGGAGAGAATACGAGATTCTCGTGCGCCGCAA
GGCTTTGGATTTGGAGCGGCGGGTTTGATCTGGCGTTTGGAGCGCTGTCG
CTGAAGCTTTGGCGAGTGTTGAGCGTTGTCGAGGTGAGGCTACGCTGATT
GTGTTCGCTCCTGGTTCTGGGTAAGGCCGGGATTGGAATTTCGTGCTTGT
CGACCCTAACGTTGCTGGGAGAGAATACGAGATTCTCGTGCGCCGCAAGG
CTTTGGATTTGGAGCGGCGGGTTTGATCTGGCGTTTGGAGCGCTGTCGCT
GAAGCTTTGGCGAGTGTTGAGCGTTGTCGAGGTGAGGCTACGCTGA
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