prot_H-paniculata_contig38028.9975.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig38028.9975.1
Unique Nameprot_H-paniculata_contig38028.9975.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
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BLAST of mRNA_H-paniculata_contig38028.9975.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.520e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0 
Query:   11 GIGISCLSTLTLLGENTRFSCAARLWIWSGGFDLAFGALSLKLWRVLSVVE 61
            GIG++ LS   LLG  T  +CA RLW +S GFDLAFGAL+LK+    S  E
Sbjct:  177 GIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAE 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38028.9975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH00_ECTSI1.520e-854.90G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..65
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..65
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 2..60
e-value: 2.3E-8
score: 34.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38028contigH-paniculata_contig38028:322..519 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38028.9975.1mRNA_H-paniculata_contig38028.9975.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig38028 322..519 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig38028.9975.1 ID=prot_H-paniculata_contig38028.9975.1|Name=mRNA_H-paniculata_contig38028.9975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LCSLLVLGKAGIGISCLSTLTLLGENTRFSCAARLWIWSGGFDLAFGALS
LKLWRVLSVVEVRLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C