prot_H-paniculata_contig3800.9968.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3800.9968.1
Unique Nameprot_H-paniculata_contig3800.9968.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length64
Homology
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 6.660e-28
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    4 QFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGE 55
            QFVN+GC NCPFLQMESDQ RVQDCTTTYFSGLIAM+DPE SWVGKWQRI E
Sbjct:   46 QFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISE 97          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: W4GN44_9STRA (Spt4 domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4GN44_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.020e-17
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMM 57
            T  QF  +GC NC FL M+ ++TRV DCTT YF G+IAM+ P+ SWV KW+RIG+ +
Sbjct:   37 TYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFV 93          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A7S3LYU5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYU5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-16
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGE 55
            T  QF + GC NC F+ +E ++ R+++CTT+YF G IA+V+P+GSWV KWQRI +
Sbjct:   30 TFEQFNDKGCENCEFIDLEGNKGRIEECTTSYFEGAIALVEPQGSWVAKWQRIAQ 84          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A662XZF9_9STRA (Spt4 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZF9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.400e-16
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIG 54
            T  QF + GC NC FLQM  ++ RV +CT+ YF G+IAM+ P+ SWV KWQRIG
Sbjct:   42 TFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIG 95          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.010e-16
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRI 53
            T  QF   GC NCPFL++E    RV +CT++YFSG+IAM++P+ SWV +WQRI
Sbjct:   41 TLTQFTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRI 93          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A2R6WGR1_MARPO (Transcription elongation factor SPT4 homolog n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WGR1_MARPO)

HSP 1 Score: 75.1 bits (183), Expect = 5.270e-16
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTKCH 61
            T  QF + GC NCPF  M+ D  RV +CTT  F+G+IA ++P GSW  +WQRI +    C+
Sbjct:   27 TYNQFTDTGCENCPFFNMDQDNDRVLECTTPNFAGVIASMEPSGSWAARWQRISKFAPGCY 87          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: W5B5R8_WHEAT (Transcription elongation factor SPT4 homolog n=7 Tax=Pooideae TaxID=147368 RepID=W5B5R8_WHEAT)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-15
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTKCH 61
            T  QF  NGC NCPFL M+ D+  V  CTT  F+G+I+++DP  SW  +W RIG  +  C+
Sbjct:   38 TYDQFRENGCENCPFLDMDKDRDNVVSCTTANFTGIISLMDPNRSWAARWLRIGRFIPGCY 98          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A453B1S3_AEGTS (Spt4 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B1S3_AEGTS)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-15
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTKCH 61
            T  QF  NGC NCPFL M+ D+  V  CTT  F+G+I+++DP  SW  +W RIG  +  C+
Sbjct:   38 TYDQFRENGCENCPFLDMDKDRDNVVSCTTANFTGIISLMDPNRSWAARWLRIGRFIPGCY 98          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A453B1L5_AEGTS (Spt4 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B1L5_AEGTS)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-15
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTK 59
            T  QF  NGC NCPFL M+ D+  V  CTT  F+G+I+++DP  SW  +W RIGE + K
Sbjct:   89 TYDQFRENGCENCPFLDMDKDRDNVVSCTTANFTGIISLMDPNRSWAARWLRIGECLVK 147          
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A418ANQ6_9STRA (Catalase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ANQ6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.220e-15
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMM 57
            T  QF  +GC NC FL M+ ++TRV DCTT YF G+IAM+ P+ SWV KW+RIG+ +
Sbjct:  475 TYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFV 531          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E5_ECTSI6.660e-2888.46Spt4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
W4GN44_9STRA2.020e-1756.14Spt4 domain-containing protein n=4 Tax=Aphanomyces... [more]
A0A7S3LYU5_9STRA1.640e-1652.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A662XZF9_9STRA3.400e-1657.41Spt4 domain-containing protein n=1 Tax=Nothophytop... [more]
A0A835Z5B7_9STRA4.010e-1656.60Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
A0A2R6WGR1_MARPO5.270e-1647.54Transcription elongation factor SPT4 homolog n=1 T... [more]
W5B5R8_WHEAT1.030e-1547.54Transcription elongation factor SPT4 homolog n=7 T... [more]
A0A453B1S3_AEGTS1.030e-1547.54Spt4 domain-containing protein n=1 Tax=Aegilops ta... [more]
A0A453B1L5_AEGTS1.180e-1550.85Spt4 domain-containing protein n=1 Tax=Aegilops ta... [more]
A0A418ANQ6_9STRA1.220e-1556.14Catalase n=2 Tax=Aphanomyces invadans TaxID=157072... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 1..61
e-value: 4.4E-12
score: 56.1
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 2..60
e-value: 1.7E-19
score: 69.7
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 1..62
e-value: 7.7E-20
score: 72.7
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..60
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 8..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3800contigH-paniculata_contig3800:749..1731 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3800.9968.1mRNA_H-paniculata_contig3800.9968.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3800 749..1731 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3800.9968.1 ID=prot_H-paniculata_contig3800.9968.1|Name=mRNA_H-paniculata_contig3800.9968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKW
QRIGEMMTKCHYP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR038510Spt4_sf
IPR009287Spt4
IPR029040RPABC4/Spt4