mRNA_H-paniculata_contig3800.9968.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3800.9968.1
Unique NamemRNA_H-paniculata_contig3800.9968.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 6.660e-28
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   10 QFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGE 165
            QFVN+GC NCPFLQMESDQ RVQDCTTTYFSGLIAM+DPE SWVGKWQRI E
Sbjct:   46 QFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISE 97
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: W4GN44_9STRA (Spt4 domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4GN44_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.020e-17
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMM 171
            T  QF  +GC NC FL M+ ++TRV DCTT YF G+IAM+ P+ SWV KW+RIG+ +
Sbjct:   37 TYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFV 93
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A7S3LYU5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYU5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-16
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGE 165
            T  QF + GC NC F+ +E ++ R+++CTT+YF G IA+V+P+GSWV KWQRI +
Sbjct:   30 TFEQFNDKGCENCEFIDLEGNKGRIEECTTSYFEGAIALVEPQGSWVAKWQRIAQ 84
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A662XZF9_9STRA (Spt4 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZF9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.400e-16
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIG 162
            T  QF + GC NC FLQM  ++ RV +CT+ YF G+IAM+ P+ SWV KWQRIG
Sbjct:   42 TFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIG 95
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.010e-16
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRI 159
            T  QF   GC NCPFL++E    RV +CT++YFSG+IAM++P+ SWV +WQRI
Sbjct:   41 TLTQFTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRI 93
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A2R6WGR1_MARPO (Transcription elongation factor SPT4 homolog n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WGR1_MARPO)

HSP 1 Score: 75.1 bits (183), Expect = 5.270e-16
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTKCH 183
            T  QF + GC NCPF  M+ D  RV +CTT  F+G+IA ++P GSW  +WQRI +    C+
Sbjct:   27 TYNQFTDTGCENCPFFNMDQDNDRVLECTTPNFAGVIASMEPSGSWAARWQRISKFAPGCY 87
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: W5B5R8_WHEAT (Transcription elongation factor SPT4 homolog n=7 Tax=Pooideae TaxID=147368 RepID=W5B5R8_WHEAT)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-15
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTKCH 183
            T  QF  NGC NCPFL M+ D+  V  CTT  F+G+I+++DP  SW  +W RIG  +  C+
Sbjct:   38 TYDQFRENGCENCPFLDMDKDRDNVVSCTTANFTGIISLMDPNRSWAARWLRIGRFIPGCY 98
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BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A453B1S3_AEGTS (Spt4 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B1S3_AEGTS)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-15
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTKCH 183
            T  QF  NGC NCPFL M+ D+  V  CTT  F+G+I+++DP  SW  +W RIG  +  C+
Sbjct:   38 TYDQFRENGCENCPFLDMDKDRDNVVSCTTANFTGIISLMDPNRSWAARWLRIGRFIPGCY 98
[Close]
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A453B1L5_AEGTS (Spt4 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B1L5_AEGTS)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-15
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMMTK 177
            T  QF  NGC NCPFL M+ D+  V  CTT  F+G+I+++DP  SW  +W RIGE + K
Sbjct:   89 TYDQFRENGCENCPFLDMDKDRDNVVSCTTANFTGIISLMDPNRSWAARWLRIGECLVK 147
[Close]
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Match: A0A418ANQ6_9STRA (Catalase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ANQ6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.220e-15
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKWQRIGEMM 171
            T  QF  +GC NC FL M+ ++TRV DCTT YF G+IAM+ P+ SWV KW+RIG+ +
Sbjct:  475 TYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFV 531
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3800.9968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E5_ECTSI6.660e-2888.46Spt4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
W4GN44_9STRA2.020e-1756.14Spt4 domain-containing protein n=4 Tax=Aphanomyces... [more]
A0A7S3LYU5_9STRA1.640e-1652.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A662XZF9_9STRA3.400e-1657.41Spt4 domain-containing protein n=1 Tax=Nothophytop... [more]
A0A835Z5B7_9STRA4.010e-1656.60Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
A0A2R6WGR1_MARPO5.270e-1647.54Transcription elongation factor SPT4 homolog n=1 T... [more]
W5B5R8_WHEAT1.030e-1547.54Transcription elongation factor SPT4 homolog n=7 T... [more]
A0A453B1S3_AEGTS1.030e-1547.54Spt4 domain-containing protein n=1 Tax=Aegilops ta... [more]
A0A453B1L5_AEGTS1.180e-1550.85Spt4 domain-containing protein n=1 Tax=Aegilops ta... [more]
A0A418ANQ6_9STRA1.220e-1556.14Catalase n=2 Tax=Aphanomyces invadans TaxID=157072... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3800contigH-paniculata_contig3800:749..1731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7e-21
Seed eggNOG ortholog2880.D7G3E5
Preferred nameSUPT4H1
KEGG koko:K15171
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0000993,GO:0001098,GO:0001099,GO:0001181,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008023,GO:0008150,GO:0008152,GO:0008270,GO:0008298,GO:0008380,GO:0009058,GO:0009059,GO:0009452,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016479,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032044,GO:0032774,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0036260,GO:0040029,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090069,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000232,GO:2000819,GO:2001020,GO:2001141,GO:2001207,GO:2001208,GO:2001209
EggNOG free text desc.positive regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5204@1,KOG3490@2759
Ec32 ortholog descriptionTranscription initiation Spt4
Ec32 orthologEc-00_006540.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021
Exons2
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930168.3514874-CDS-H-paniculata_contig3800:748..8361622930168.3514874-CDS-H-paniculata_contig3800:748..836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3800 749..836 -
1691481174.814424-CDS-H-paniculata_contig3800:748..8361691481174.814424-CDS-H-paniculata_contig3800:748..836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3800 749..836 -
1622930168.3674893-CDS-H-paniculata_contig3800:1627..17311622930168.3674893-CDS-H-paniculata_contig3800:1627..1731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3800 1628..1731 -
1691481174.827311-CDS-H-paniculata_contig3800:1627..17311691481174.827311-CDS-H-paniculata_contig3800:1627..1731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3800 1628..1731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3800.9968.1prot_H-paniculata_contig3800.9968.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3800 749..1731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3800.9968.1

>prot_H-paniculata_contig3800.9968.1 ID=prot_H-paniculata_contig3800.9968.1|Name=mRNA_H-paniculata_contig3800.9968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
TKPQFVNNGCINCPFLQMESDQTRVQDCTTTYFSGLIAMVDPEGSWVGKW
QRIGEMMTKCHYP*
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mRNA from alignment at H-paniculata_contig3800:749..1731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3800.9968.1 ID=mRNA_H-paniculata_contig3800.9968.1|Name=mRNA_H-paniculata_contig3800.9968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=983bp|location=Sequence derived from alignment at H-paniculata_contig3800:749..1731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAACCTCAGTTCGTGAACAACGGATGTATCAACTGCCCTTTCTTGCA
AATGGAGAGTGACCAAACGCGCGTGCAAGATTGCACCACGACGTACTTCA
GCGGGTGAGTCTGTTATGTTTTTCTCATCCATCAGGGTTATCTTTGCGTC
TCGGCACTGCACAAATTATGATCAGTTGGTGTGTCTTATCGGCGTTGGGA
ACGTGATTTTCGATGCAGAATGATTTCTGCTTTACTAGCTAACTGTGCTG
ACATGGGGGTGTTGAAGGCAAGAATCGAACGCCTTATGAAATATCTTACT
GCTCCTTATAATTTAGTCCTAGCATTACCCTCCGTTTCCCCCCGAGATTT
GTTTCGGAGCATCACGCATTATGGCCTGTCAGCGAATAGACGGAGGACGG
GGGAGGCTACTCTTCTTGCTGTACAGTCCAGCGGAGTATACGATCCAATG
CAAGGATTTTTTAACCCGCGAAAACCTCGTGGGCAAAAGGAGGCTTTCGA
ATGCGTTCACTTTCAATTGATGTACGGGATCGTTGGCATCTGTCTCTGCT
CATGGGTTTTTGATCCCAGGGACAGAATTGACATGAAAATCTCCCCCCAC
TCCTCCTTCACAATGGAAGACGGGTAGGATTACATCAGAATGGTCAAGAC
GAAAAAGCGAAAAATACTCACCTGGATGTTGAGCATAAGCTCATTTGTTC
CATGTACCCTGGACCATCTACATTATCGCTGCGGCGAATATTTTCAAAAC
GAAAGAACAGGGGTGACAACGTAATCCTATTTTATGTGCCCACTCATGCA
GAAACTCGGCCGAATAATTTTAGGCTTTTGTCGACACCATACGAAATGTT
TCAGAGTAAGACATTTTTTGCCCGTCTCGTTGTGCGTATGGGCAGGCTGA
TCGCTATGGTTGATCCAGAGGGCAGCTGGGTGGGGAAATGGCAGCGAATC
GGTGAGATGATGACAAAATGCCATTATCCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3800:749..1731-

>mRNA_H-paniculata_contig3800.9968.1 ID=mRNA_H-paniculata_contig3800.9968.1|Name=mRNA_H-paniculata_contig3800.9968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig3800:749..1731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAACCTCAGTTCGTGAACAACGGATGTATCAACTGCCCTTTCTTGCA
AATGGAGAGTGACCAAACGCGCGTGCAAGATTGCACCACGACGTACTTCA
GCGGACCAAACCTCAGTTCGTGAACAACGGATGTATCAACTGCCCTTTCT
TGCAAATGGAGAGTGACCAAACGCGCGTGCAAGATTGCACCACGACGTAC
TTCAGCGGGCTGATCGCTATGGTTGATCCAGAGGGCAGCTGGGTGGGGAA
ATGGCAGCGAATCGGTGAGATGATGACAAAATGCCATTATCCATGAGCTG
ATCGCTATGGTTGATCCAGAGGGCAGCTGGGTGGGGAAATGGCAGCGAAT
CGGTGAGATGATGACAAAATGCCATTATCCATGA
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