prot_H-paniculata_contig11500.969.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11500.969.1
Unique Nameprot_H-paniculata_contig11500.969.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Match: D8LJ31_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ31_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.050e-26
Identity = 43/66 (65.15%), Postives = 58/66 (87.88%), Query Frame = 0
Query:    1 MDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALGSLYATEKWSFIAARLV 66
            MDLRWQGWV+S YG++SFF+ P+L R SDS+GRV+ML++S +G++ GALGSLYAT +W+FIA+R V
Sbjct:   10 MDLRWQGWVASTYGLISFFVGPMLGRVSDSMGRVAMLKMSCVGNIIGALGSLYATGRWTFIASRKV 75          
BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Match: A0A6H5JC31_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC31_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.600e-23
Identity = 43/64 (67.19%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    1 MDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALGSLYATEKWSFIAAR 64
            MDLRWQGWV+S YGI+SFF+ P+L R SDS+GRV+ML++S +G++ GALGSLYAT +W+FIA+R
Sbjct:   94 MDLRWQGWVASTYGIISFFVGPMLGRVSDSMGRVAMLKMSCVGNMIGALGSLYATGRWTFIASR 157          
BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Match: A0A835Z3Q7_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.210e-13
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    1 MDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALGSLYATEKWSFIAARLV 66
            MDL  QG+V S   + +F ++P+L RASDS GRV++L++SA GS+ GA G+L A  KW+FI AR++
Sbjct:   66 MDLVQQGYVGSASALSAFVMSPILGRASDSYGRVTLLKLSAAGSILGAAGTLLAPNKWAFILARVL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ31_ECTSI4.050e-2665.15MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC31_9PHAE6.600e-2367.19MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z3Q7_9STRA9.210e-1351.52Major facilitator superfamily domain-containing pr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 1..66
e-value: 2.0E-9
score: 38.7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..66
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..55
NoneNo IPR availableTMHMMTMhelixcoord: 35..54
NoneNo IPR availableTMHMMTMhelixcoord: 7..25
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 1..66
score: 9.57
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 4..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11500contigH-paniculata_contig11500:3594..4248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11500.969.1mRNA_H-paniculata_contig11500.969.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11500 3567..4248 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11500.969.1 ID=prot_H-paniculata_contig11500.969.1|Name=mRNA_H-paniculata_contig11500.969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALG
SLYATEKWSFIAARLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR036259MFS_trans_sf