mRNA_H-paniculata_contig11454.944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11454.944.1
Unique NamemRNA_H-paniculata_contig11454.944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI0006A751E5 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A751E5)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-12
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKT 282
            MTIEYN +V++ TF+          + SMW+YK K DADG     K+RLVA+G  Q QG+DY +  +P +   T++T
Sbjct:   73 MTIEYNAIVKSETFDLVPRPSNTNIVRSMWLYKHKYDADGNFKSHKSRLVANGKSQEQGIDYDETFSPVVKPATIRT 149          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 2.140e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318
            NI EA ++E  +        E+N L++ GT+    P D    + S W++K K  ADG V   KARLVA G  Q +G+DY ++ +P +   ++++  A+AN L   I
Sbjct:  555 NISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEI 660          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 2.220e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318
            NI EA ++E  +        E+N L++ GT+    P D    + S W++K K  ADG V   KARLVA G  Q +G+DY ++ +P +   ++++  A+AN L   I
Sbjct:  835 NISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEI 940          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI0008724BFD (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI0008724BFD)

HSP 1 Score: 67.4 bits (163), Expect = 6.720e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANE 303
            MT+EY+ +V++ TF+          + SMW+YK K DADG   G K+RLVA+G  Q  G+DY +  +P +   T++T   VA E
Sbjct:    1 MTVEYDAIVKSETFDLVPRPPNVNIVRSMWLYKHKYDADGNFKGHKSRLVANGKSQEHGIDYDETFSPIVKPATIRTVLNVALE 84          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A251TQK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TQK1_HELAN)

HSP 1 Score: 63.9 bits (154), Expect = 9.970e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANE 303
            M  E   L + G +  EN  +  +TI+S W+YK K   +G V   KARLVA+G  Q +G+DY+D  AP   + TV+T  AVA +
Sbjct:   10 MEKEIRALEENGIWTLENLPEGKRTIDSKWVYKVKYKPNGEVERYKARLVANGFTQQEGVDYHDTFAPVAKLVTVRTLLAVATK 93          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A8J4CGM5_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CGM5_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 4.960e-10
Identity = 36/104 (34.62%), Postives = 53/104 (50.96%), Query Frame = 1
Query:    7 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318
            +EA+NS +       M  E   L   GT+  E+P      I   W+YK K DA+G +   KAR VA G KQ++G+D+ ++ AP     TV+   A A   G+ +
Sbjct:    6 EEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEV 109          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: O04013_VOLCA (Reverse transcriptase, gag, polyprotein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=O04013_VOLCA)

HSP 1 Score: 64.7 bits (156), Expect = 6.800e-10
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 1
Query:    7 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318
            +EA+ S Q  +    M  E   L + GT+  E+P      +   W+YK K+ ADG V   KAR VA G  QV+G+DY ++ AP  +  TV+  +  A   G+ +
Sbjct:  848 QEAIKSPQADMWWEAMEEEIASLHRLGTWRLEHPPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRAFSPKAAAKGIEV 951          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI00077A73AE (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A73AE)

HSP 1 Score: 62.4 bits (150), Expect = 7.620e-10
Identity = 33/105 (31.43%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    4 IKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318
            +KEA++ +        +  EY+ L+   T+    P      + S W+ K K DA+G +   KARLVA G  Q QG+DY ++ +P     + +T  A+AN   L +
Sbjct:   63 MKEALDGKNSKQWKEALDAEYSSLINNETWELVPPPLDANIVGSKWVLKVKRDANGNINQYKARLVAQGYSQTQGIDYEEVFSPVARYSSSRTLLALANAYNLEV 167          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A5N5I1R6_9ROSA (DNA polymerase zeta catalytic subunit-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I1R6_9ROSA)

HSP 1 Score: 63.2 bits (152), Expect = 2.320e-9
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    7 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318
            KEA++S + S     + +E   ++Q  T+   +    NK +   WI+K K  ADG +   KAR+VA G KQ +GLDY+D  +P   I +++    +A    L I
Sbjct:  366 KEAISSPEASFWKEAINVEIESIMQNHTWELVDLPPGNKPLGYKWIFKRKMKADGSIDKYKARIVAKGYKQREGLDYFDTYSPVTRITSIRMLIVIAAIHNLEI 469          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A2Z6N6S4_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N6S4_TRISU)

HSP 1 Score: 63.2 bits (152), Expect = 2.370e-9
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVAN 300
            M +E   L +TGT+   +     K I   W+Y+ K +ADG +   KARL+A G  Q++GLDY+D  +P   + TV+T  A+A+
Sbjct:  896 MRVELEALEKTGTWLLVDLPPTVKPIGCRWVYRIKYNADGSIERYKARLIAKGYNQIEGLDYFDTYSPVAKLTTVRTVIALAS 978          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006A751E52.630e-1242.86uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A6S7GWB8_PARCT2.140e-1134.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT2.220e-1134.91Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI0008724BFD6.720e-1140.48uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A251TQK1_HELAN9.970e-1141.67Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A8J4CGM5_9CHLO4.960e-1034.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
O04013_VOLCA6.800e-1034.62Reverse transcriptase, gag, polyprotein n=1 Tax=Vo... [more]
UPI00077A73AE7.620e-1031.43uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A5N5I1R6_9ROSA2.320e-933.65DNA polymerase zeta catalytic subunit-like n=1 Tax... [more]
A0A2Z6N6S4_TRISU2.370e-938.55Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11454contigH-paniculata_contig11454:4928..5245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog102107.XP_008238300.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37UIU@33090,3GY7W@35493,4JWFD@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.6768029-CDS-H-paniculata_contig11454:4927..52451622928852.6768029-CDS-H-paniculata_contig11454:4927..5245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11454 4928..5245 +
1691480645.3184123-CDS-H-paniculata_contig11454:4927..52451691480645.3184123-CDS-H-paniculata_contig11454:4927..5245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11454 4928..5245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11454.944.1prot_H-paniculata_contig11454.944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11454 4928..5245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11454.944.1

>prot_H-paniculata_contig11454.944.1 ID=prot_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYK
WKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVAN
ELGLRI
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mRNA from alignment at H-paniculata_contig11454:4928..5245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11454.944.1 ID=mRNA_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig11454:4928..5245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATCAAGGAGGCAGTAAATTCTGAACAGGGTAGTGTACGACACAATAT CATGACCATAGAGTACAACGGTTTGGTACAAACAGGTACTTTTAATCGAG AAAACCCGTCCGATAAAAATAAAACAATCAATTCCATGTGGATATATAAG TGGAAAACAGACGCTGATGGCATGGTAACAGGTGCAAAGGCTAGACTAGT AGCTTCTGGAGACAAGCAAGTTCAAGGTCTAGACTATTATGACATACTCG CGCCAAGGCTATCAATTGGTACCGTAAAAACAGGCGCAGCAGTAGCAAAC GAGCTGGGCTTGAGAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig11454:4928..5245+

>mRNA_H-paniculata_contig11454.944.1 ID=mRNA_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig11454:4928..5245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATCAAGGAGGCAGTAAATTCTGAACAGGGTAGTGTACGACACAATAT
CATGACCATAGAGTACAACGGTTTGGTACAAACAGGTACTTTTAATCGAG
AAAACCCGTCCGATAAAAATAAAACAATCAATTCCATGTGGATATATAAG
TGGAAAACAGACGCTGATGGCATGGTAACAGGTGCAAAGGCTAGACTAGT
AGCTTCTGGAGACAAGCAAGTTCAAGGTCTAGACTATTATGACATACTCG
CGCCAAGGCTATCAATTGGTACCGTAAAAACAGGCGCAGCAGTAGCAAAC
GAGCTGGGCTTGAGAATTAATATCAAGGAGGCAGTAAATTCTGAACAGGG
TAGTGTACGACACAATATCATGACCATAGAGTACAACGGTTTGGTACAAA
CAGGTACTTTTAATCGAGAAAACCCGTCCGATAAAAATAAAACAATCAAT
TCCATGTGGATATATAAGTGGAAAACAGACGCTGATGGCATGGTAACAGG
TGCAAAGGCTAGACTAGTAGCTTCTGGAGACAAGCAAGTTCAAGGTCTAG
ACTATTATGACATACTCGCGCCAAGGCTATCAATTGGTACCGTAAAAACA
GGCGCAGCAGTAGCAAACGAGCTGGGCTTGAGAATT
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