prot_H-paniculata_contig11454.944.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11454.944.1
Unique Nameprot_H-paniculata_contig11454.944.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI0006A751E5 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A751E5)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-12
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKT 94
            MTIEYN +V++ TF+          + SMW+YK K DADG     K+RLVA+G  Q QG+DY +  +P +   T++T
Sbjct:   73 MTIEYNAIVKSETFDLVPRPSNTNIVRSMWLYKHKYDADGNFKSHKSRLVANGKSQEQGIDYDETFSPVVKPATIRT 149          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 2.140e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0
Query:    1 NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 106
            NI EA ++E  +        E+N L++ GT+    P D    + S W++K K  ADG V   KARLVA G  Q +G+DY ++ +P +   ++++  A+AN L   I
Sbjct:  555 NISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEI 660          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 2.220e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0
Query:    1 NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 106
            NI EA ++E  +        E+N L++ GT+    P D    + S W++K K  ADG V   KARLVA G  Q +G+DY ++ +P +   ++++  A+AN L   I
Sbjct:  835 NISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEI 940          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A392R5K8_9FABA (Putative E3 ubiquitin-protein ligase LOG2 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R5K8_9FABA)

HSP 1 Score: 64.7 bits (156), Expect = 5.120e-11
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVAN 100
            M  E   L +TGT+   +     K I S W+YK K  ADG +   KARLVA G  QV+GLD++D  +P   + TV+T  A+A+
Sbjct:    1 MNDELEALTKTGTWKFVDLPPLAKPIGSKWVYKVKYKADGTIERYKARLVAKGYTQVEGLDFFDTFSPVAKLTTVRTLLAIAS 83          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI0008724BFD (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI0008724BFD)

HSP 1 Score: 67.4 bits (163), Expect = 6.720e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANE 101
            MT+EY+ +V++ TF+          + SMW+YK K DADG   G K+RLVA+G  Q  G+DY +  +P +   T++T   VA E
Sbjct:    1 MTVEYDAIVKSETFDLVPRPPNVNIVRSMWLYKHKYDADGNFKGHKSRLVANGKSQEHGIDYDETFSPIVKPATIRTVLNVALE 84          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A251TQK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TQK1_HELAN)

HSP 1 Score: 63.9 bits (154), Expect = 9.970e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANE 101
            M  E   L + G +  EN  +  +TI+S W+YK K   +G V   KARLVA+G  Q +G+DY+D  AP   + TV+T  AVA +
Sbjct:   10 MEKEIRALEENGIWTLENLPEGKRTIDSKWVYKVKYKPNGEVERYKARLVANGFTQQEGVDYHDTFAPVAKLVTVRTLLAVATK 93          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: D6C783_HELAN (Copia-like retrotransposon n=2 Tax=Helianthus annuus TaxID=4232 RepID=D6C783_HELAN)

HSP 1 Score: 65.9 bits (159), Expect = 2.680e-10
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 0
Query:    3 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 106
            KEAVN E  S+  N            GT+   +     K I S WI+K K   DG ++  KARLVA G +Q +G+DY+D  AP   IG+++T  AV+   GL I
Sbjct:  864 KEAVNDEMDSIMGN------------GTWELADLPKGKKPIGSKWIFKRKYHPDGSISAYKARLVAKGYRQREGVDYFDTYAPVARIGSIRTLIAVSALKGLYI 955          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A2K3K7V9_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K7V9_TRIPR)

HSP 1 Score: 62.0 bits (149), Expect = 3.660e-10
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELG 103
            M  E   L +TGT+   +     K I + W+YK K  +DG +   KARLVA G  QV+GLD++D  +P   + TV+   A+A+  G
Sbjct:   25 MNSELEALARTGTWKIVDLPPNVKPIGNKWVYKIKHKSDGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRMLLAIASIKG 110          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A2K3MQM8_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQM8_TRIPR)

HSP 1 Score: 65.1 bits (157), Expect = 4.910e-10
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELG 103
            MT E   L +TGT+   +     K I S W+YK K  +DG +   KARLVA G  QV+GLD++D  +P   + TV+   A+A+  G
Sbjct:  467 MTSELEALARTGTWKIVDLPPNVKPIGSKWVYKIKHKSDGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRMLLAIASIKG 552          
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A2K3MUF3_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MUF3_TRIPR)

HSP 1 Score: 65.1 bits (157), Expect = 4.920e-10
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 0
Query:   18 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVAN 100
            M +E   L  TGT+N  +     K I   W+YK K  ADG V   KARLVA G  Q++GLDY+D  +P   + TV+   A+A+
Sbjct:  483 MQVELQALEATGTWNLVDLPHHVKPIGCRWVYKVKHHADGTVERYKARLVAKGFNQIEGLDYFDTFSPVAKLTTVRMVIALAS 565          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006A751E52.630e-1242.86uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A6S7GWB8_PARCT2.140e-1134.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT2.220e-1134.91Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A392R5K8_9FABA5.120e-1142.17Putative E3 ubiquitin-protein ligase LOG2 (Fragmen... [more]
UPI0008724BFD6.720e-1140.48uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A251TQK1_HELAN9.970e-1141.67Putative reverse transcriptase, RNA-dependent DNA ... [more]
D6C783_HELAN2.680e-1039.42Copia-like retrotransposon n=2 Tax=Helianthus annu... [more]
A0A2K3K7V9_TRIPR3.660e-1038.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MQM8_TRIPR4.910e-1040.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MUF3_TRIPR4.920e-1042.17Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 35..103
e-value: 9.1E-9
score: 35.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 34..99
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 34..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11454contigH-paniculata_contig11454:4928..5245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11454.944.1mRNA_H-paniculata_contig11454.944.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11454 4928..5245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11454.944.1 ID=prot_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYK
WKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVAN
ELGLRI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like