mRNA_H-paniculata_contig34848.9291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34848.9291.1
Unique NamemRNA_H-paniculata_contig34848.9291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: D7FUH7_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.540e-18
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    4 YDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            YDPR+RPWYV +SSGPKDVVI+LD+S SM Q GRLDLA +A E V++T+   +FVNVV
Sbjct:   98 YDPRIRPWYVAASSGPKDVVIVLDVSGSMSQYGRLDLAKEAAETVINTLGADSFVNVV 155          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A7S3LU80_9EUKA (Hypothetical protein n=5 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LU80_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPR+RPW+V +SSGPKD+VI++D S SM Q GR+D AI+A + V+ T + + +++VV
Sbjct:  235 DYDPRIRPWFVLASSGPKDIVILIDKSGSMGQYGRMDKAIEAAQAVISTSSANDYISVV 293          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A7S3LUB0_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LUB0_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPR+RPW+V +SSGPKD+VI++D S SM Q GR+D AI+A + V+ T + + +++VV
Sbjct:  235 DYDPRIRPWFVLASSGPKDIVILIDKSGSMGQYGRMDKAIEAAQAVISTSSANDYISVV 293          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A7S1C8J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8J8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-13
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPR RPWYV +SSGPK+V+++LD+S SM  K R  +A DA + VL+T+  + FV+V+
Sbjct:  111 DYDPRFRPWYVGASSGPKNVILVLDMSGSMALKNRAKIARDAAKSVLETLTVNDFVSVI 169          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A7M7NN62_STRPU (VWFA domain-containing protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7NN62_STRPU)

HSP 1 Score: 71.6 bits (174), Expect = 3.760e-13
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPRVRPWY+ ++SGPKDVVIILD S SM+ + +  +A + V+ VLDT+ +  +VN++
Sbjct:  243 DYDPRVRPWYIAATSGPKDVVIILDCSYSMKGE-KFKIATEVVKTVLDTLTKQDYVNII 300          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A8B7YHQ9_ACAPL (voltage-dependent calcium channel subunit alpha-2/delta-3-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YHQ9_ACAPL)

HSP 1 Score: 71.6 bits (174), Expect = 3.760e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPRVRPWY+T +S PKDVVI++D S+SM+ K + ++A+  V  +LDT+ +  +VNV+
Sbjct:  245 DYDPRVRPWYITGTSDPKDVVIMIDCSTSMQGK-KFEIAVSVVRIILDTLTKQDYVNVI 302          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A7S2LVG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVG3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.840e-13
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTM 150
            +YDPR RPW+V +SSGPKDV+I+LD+S SM   G++DLA  A   V+DT+
Sbjct:   39 NYDPRKRPWFVAASSGPKDVIIVLDVSGSMSNYGKMDLAKKAAITVVDTL 88          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A6P8HPB9_ACTTE (voltage-dependent calcium channel subunit alpha-2/delta-1-like n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HPB9_ACTTE)

HSP 1 Score: 70.5 bits (171), Expect = 9.590e-13
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPR+RPWY+ ++SGPKD+VI+LD S SM+ K RL +A +  + VL+T+ +  FVNV+
Sbjct:  228 DYDPRMRPWYIGATSGPKDIVIVLDCSLSMKGK-RLTMAKEVAKTVLNTLTKQDFVNVI 285          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A813YD87_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813YD87_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 9.600e-13
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPRVR WY+ ++SGPKDVVII+D S SM+ K + D+A    + V+DT+  H +VNV+
Sbjct:  242 DYDPRVRNWYIAATSGPKDVVIIIDCSLSMKGK-KFDIAKSIAKAVIDTLTSHDYVNVI 299          
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Match: A0A6B2L1C9_9EUKA (VWFA domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L1C9_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTMNEHTFVNVV 177
            DYDPR RPWY+ +SSGPKDVV+ILD S SM    R+ LA  A  +VL+T+  + ++ VV
Sbjct:  130 DYDPRTRPWYIAASSGPKDVVLILDTSGSMSNFNRISLAKAAATKVLNTLTINDYIGVV 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34848.9291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUH7_ECTSI1.540e-1867.24VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3LU80_9EUKA1.660e-1454.24Hypothetical protein n=5 Tax=Palpitomonas bilix Ta... [more]
A0A7S3LUB0_9EUKA1.660e-1454.24Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A7S1C8J8_9STRA1.860e-1354.24Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7M7NN62_STRPU3.760e-1354.24VWFA domain-containing protein n=3 Tax=Echinacea T... [more]
A0A8B7YHQ9_ACAPL3.760e-1352.54voltage-dependent calcium channel subunit alpha-2/... [more]
A0A7S2LVG3_9STRA7.840e-1358.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6P8HPB9_ACTTE9.590e-1354.24voltage-dependent calcium channel subunit alpha-2/... [more]
A0A813YD87_9BILA9.600e-1354.24Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6B2L1C9_9EUKA1.300e-1254.24VWFA domain-containing protein n=1 Tax=Arcella int... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34848contigH-paniculata_contig34848:1390..1566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FUH7
KEGG koko:K04860
KEGG TC8.A.18.3
KEGG Pathwayko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.voltage-gated calcium channel activity
EggNOG OGsKOG2353@1,KOG2353@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.52956-CDS-H-paniculata_contig34848:1389..15661622930076.52956-CDS-H-paniculata_contig34848:1389..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34848 1390..1566 -
1691481137.0316164-CDS-H-paniculata_contig34848:1389..15661691481137.0316164-CDS-H-paniculata_contig34848:1389..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34848 1390..1566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34848.9291.1prot_H-paniculata_contig34848.9291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34848 1390..1566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34848.9291.1

>prot_H-paniculata_contig34848.9291.1 ID=prot_H-paniculata_contig34848.9291.1|Name=mRNA_H-paniculata_contig34848.9291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
DYDPRVRPWYVTSSSGPKDVVIILDISSSMRQKGRLDLAIDAVERVLDTM
NEHTFVNVV
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mRNA from alignment at H-paniculata_contig34848:1390..1566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34848.9291.1 ID=mRNA_H-paniculata_contig34848.9291.1|Name=mRNA_H-paniculata_contig34848.9291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig34848:1390..1566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTACGACCCGCGAGTTCGCCCGTGGTACGTTACGAGTTCTAGCGGCCC TAAGGACGTCGTTATCATCTTGGACATCAGTAGCTCTATGAGGCAGAAAG GCCGCCTTGATCTCGCGATAGATGCCGTGGAGCGCGTTCTGGACACTATG AATGAGCACACGTTTGTCAACGTTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig34848:1390..1566-

>mRNA_H-paniculata_contig34848.9291.1 ID=mRNA_H-paniculata_contig34848.9291.1|Name=mRNA_H-paniculata_contig34848.9291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig34848:1390..1566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTACGACCCGCGAGTTCGCCCGTGGTACGTTACGAGTTCTAGCGGCCC
TAAGGACGTCGTTATCATCTTGGACATCAGTAGCTCTATGAGGCAGAAAG
GCCGCCTTGATCTCGCGATAGATGCCGTGGAGCGCGTTCTGGACACTATG
AATGAGCACACGTTTGTCAACGTTGTAGATTACGACCCGCGAGTTCGCCC
GTGGTACGTTACGAGTTCTAGCGGCCCTAAGGACGTCGTTATCATCTTGG
ACATCAGTAGCTCTATGAGGCAGAAAGGCCGCCTTGATCTCGCGATAGAT
GCCGTGGAGCGCGTTCTGGACACTATGAATGAGCACACGTTTGTCAACGT
TGTA
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