mRNA_H-paniculata_contig11423.928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11423.928.1
Unique NamemRNA_H-paniculata_contig11423.928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.080e-18
Identity = 51/87 (58.62%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  130 LLLVALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLV 390
            +LL A+KEKMPWL S+ VV +QDGA+PHT K  P  LN      GW   L TQPAQSPDLNINDLG FA LK R       +ID LV
Sbjct:  278 VLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.220e-18
Identity = 49/156 (31.41%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  148 KEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGT--IDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVED----IETKERQRAGSLPQSVDRETFDAAIKW 597
            KEKMPW+ +  +  + DGA PHT      +++      GW   +  Q AQSPDLN+ DLGLF  LK++  + + G   ID L++  + +Y      TL+++W      + +I++A+G N ++       +  KE   A +L  S+D + ++AA+ +
Sbjct:    4 KEKMPWMRNRRLKIQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGGTVSRKEEGSAVNL--SIDADAYNAAVDY 157          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 81.3 bits (199), Expect = 3.630e-15
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  109 TRSSIRTLLLV----ALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSVD 567
            TR  I+ ++L     A++   P    + +  +QD A PH   D P  L E  +DG +D +L  QPAQSPDLN+ DLG F  ++    +E   +++ LVE   + Y + D   +   W        +I+K  GGN+F+      K  QR G LP  V+
Sbjct:   53 TRDIIKKMILEEVMPAIRATWPENSCKTIWIQQDNARPHINIDDPEFLEEANKDG-FDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYVE 208          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV)

HSP 1 Score: 82.8 bits (203), Expect = 7.670e-15
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  103 SDTRSSIRTL----LLVALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSVD 567
            S T+ +IR +    LL A++ K P    +E+  +QD A PH + +    L E  R+GG++ N+  QPAQSPDLNI DLG F  ++    +    T+D L++  +  Y   +   +   W  L     +ILK  GGN+++      K+  R G LP +V+
Sbjct:  326 SITKETIREMIINKLLPAIRAKWPENGCKEIWIQQDNARPHIQPNDAEFL-EACREGGFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYEPRIINYTWIHLMYVMVEILKVKGGNNYKNPHNSKKKMDRLGLLPTTVE 483          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: UPI0005401A41 (uncharacterized protein LOC104884671 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0005401A41)

HSP 1 Score: 78.6 bits (192), Expect = 3.540e-14
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  109 TRSSIRTLLLVALKEKMPWLES--EEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSV 564
            T+  +   ++ A+K K P  +   + +  +QD A  H  ++ P      ++DG + F L  QP  SPDLNI DLG F  ++    ++    +D ++E     Y   D   L  +W SL    N+ILK +GGND+++  +  K  Q  G L   V
Sbjct:   59 TKQMLIEQIIPAIKAKWPQDDGRPKTIFIQQDNAKAHITQEDPEWQQVYQQDG-FTFILLQQPPNSPDLNILDLGFFRSIQSLMHKKMPQDVDKMLEAVHEAYHELDHKKLSNVWYSLQFVMNEILKCVGGNDYDISHVNKKRIQSEGKLEDQV 211          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: UPI000901F817 (uncharacterized protein LOC109136021 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000901F817)

HSP 1 Score: 78.6 bits (192), Expect = 6.840e-14
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  112 RSSIRTLLLVALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSV--DRETFDAAIKWWIDG 609
            R  +   +L+A KEK P    +++   QD A PH   D  +   E ++DG +D  L  QPAQSPD+N+ DLG F  ++    +    T+  LV+     YD  D      +W +L Q   + L   G N++ +  +  K  +R G LP S+    +  + + KW  +G
Sbjct:   89 REKLVNHILLATKEKWPEDGCKQIWTVQDNARPHIASDDAQFNLEAKKDG-FDKRLINQPAQSPDMNVLDLGFFNAIQTLEDQIAPRTVKHLVKAMNKAYDKYDPKLCNHIWLTLQQVMKETLIVKGNNNYHIPHMGKKALERRGELPTSIILSPQLVEESKKWAEEG 255          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.340e-14
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  190 EQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYG-TIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAG 546
            +QDGA PHT  +T   L    +  G+D  + TQPAQSPDLN+NDLG F  LK          +++ +++  +  Y+   A  L+RM+ SL   Y  +LK  G NDF  E++    +QR G
Sbjct:   35 QQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQEELHLG-KQRKG 151          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7)

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-13
Identity = 55/157 (35.03%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  112 RSSIRTLLLV----ALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLET--QPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSV 564
            R  IR +LL     A+K K P   +++VV + D A PH     PR    +E      FN++   QPAQSPDLN+ DLGLF  ++    +     +D LV+  K  YD  D    + +W +L     +ILKA GGN +++  +  K+ +  G LP+ V
Sbjct:  181 REVIRLMLLTKVIPAIKSKWPESLAKDVVIQWDNARPHQ---VPRDAEFIEATTTNGFNIQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPHMNKKKLENIGILPEIV 334          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 77.4 bits (189), Expect = 5.600e-13
Identity = 50/164 (30.49%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  112 RSSIRTLLLVALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSV--DRETFDAAIKW 597
            R  I   ++ A+    P   S+E+  +QD A PH     P+ +    ++G ++  L  QPAQSPDLN+ DLG F  ++    +     +D L+   +  YD  D   L+  W  L     +ILK  GGN+F+      ++ +R G LP++V  D+   D A+ +
Sbjct:  343 RDMIVNTIIPAIMRNWPEGVSKEIYIQQDNARPHIHASDPQFIAAATQNG-FNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEAVTY 505          
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499)

HSP 1 Score: 75.9 bits (185), Expect = 8.520e-13
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  112 RSSIRTLLLVALKEKMPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPDLNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSLFQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSVD 567
            RS +   LL A+K K P    +++  +QD A PH   +  R+  E     G++  L  QPAQSPD+NI DLG F  ++    +    ++  L+E  ++ Y A D+  +   W  L     +IL+  GGN+++      K+ +R G LP  ++
Sbjct:  120 RSKMIEDLLPAIKSKWPSNACKDIWIQQDNARPHISPND-REFLEAATQDGFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERLGLLPTEIE 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11423.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.080e-1858.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU94_9STRA1.220e-1831.41Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI000B778AD23.630e-1533.12uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
J3S7K7_BETVV7.670e-1533.33Mariner transposase n=2 Tax=Beta vulgaris subsp. v... [more]
UPI0005401A413.540e-1430.52uncharacterized protein LOC104884671 n=1 Tax=Beta ... [more]
UPI000901F8176.840e-1430.36uncharacterized protein LOC109136021 n=1 Tax=Beta ... [more]
A0A7S2FC44_9STRA8.340e-1438.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000B797FC71.100e-1335.03uncharacterized protein LOC110699849 n=2 Tax=Cheno... [more]
UPI00053F85275.600e-1330.49uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]
UPI000B8AF4998.520e-1330.92uncharacterized protein LOC110800263 n=1 Tax=Spina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11423contigH-paniculata_contig11423:4010..4650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue6.9e-14
Seed eggNOG ortholog161934.XP_010689342.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size641
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11423.928.1prot_H-paniculata_contig11423.928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11423 4166..4627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.3037374-UTR-H-paniculata_contig11423:4009..41651622928851.3037374-UTR-H-paniculata_contig11423:4009..4165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11423 4010..4165 +
1691480644.54396-UTR-H-paniculata_contig11423:4009..41651691480644.54396-UTR-H-paniculata_contig11423:4009..4165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11423 4010..4165 +
1622928851.325566-UTR-H-paniculata_contig11423:4627..46501622928851.325566-UTR-H-paniculata_contig11423:4627..4650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11423 4628..4650 +
1691480644.5596898-UTR-H-paniculata_contig11423:4627..46501691480644.5596898-UTR-H-paniculata_contig11423:4627..4650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11423 4628..4650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.3159537-CDS-H-paniculata_contig11423:4165..46271622928851.3159537-CDS-H-paniculata_contig11423:4165..4627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11423 4166..4627 +
1691480644.5523841-CDS-H-paniculata_contig11423:4165..46271691480644.5523841-CDS-H-paniculata_contig11423:4165..4627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11423 4166..4627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11423.928.1

>prot_H-paniculata_contig11423.928.1 ID=prot_H-paniculata_contig11423.928.1|Name=mRNA_H-paniculata_contig11423.928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MPWLESEEVVAEQDGATPHTEKDTPRKLNELERDGGWDFNLETQPAQSPD
LNINDLGLFAYLKIRFRRERYGTIDGLVEGAKSMYDACDATTLERMWQSL
FQRYNQILKALGGNDFEVEDIETKERQRAGSLPQSVDRETFDAAIKWWID
GKE*
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mRNA from alignment at H-paniculata_contig11423:4010..4650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11423.928.1 ID=mRNA_H-paniculata_contig11423.928.1|Name=mRNA_H-paniculata_contig11423.928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=641bp|location=Sequence derived from alignment at H-paniculata_contig11423:4010..4650+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCGTTTCGCGTCCAGATCCTTCCCGCGATTTCGACAGCAAGATTGGA ACCTGGCGTGAACGGGGGCAGCAATACGAGTTCGACATGACCATTGGCAC CGAGTGATACCAGGAGTAGTATAAGGACTCTTCTCCTAGTAGCATTGAAG GAGAAAATGCCGTGGTTGGAGAGTGAGGAAGTTGTAGCGGAGCAGGACGG AGCGACCCCCCACACGGAGAAAGACACGCCGCGGAAGCTCAACGAACTCG AGAGGGACGGGGGGTGGGACTTCAATCTCGAAACTCAGCCTGCGCAGTCA CCAGATCTCAACATCAACGATTTGGGGCTCTTTGCATATCTGAAAATTAG GTTTCGGAGGGAGCGTTACGGTACGATAGACGGCCTTGTGGAGGGAGCAA AGAGCATGTACGATGCGTGCGACGCGACGACCTTAGAGAGGATGTGGCAG AGCCTCTTTCAGCGGTACAATCAGATCTTGAAGGCGCTAGGAGGAAACGA TTTCGAGGTAGAGGACATTGAAACCAAGGAAAGGCAGCGTGCGGGAAGTC TGCCACAATCGGTCGACCGAGAGACTTTCGACGCGGCGATAAAATGGTGG ATTGATGGGAAAGAGTAAAGCTGCGAAGAATAAAATTAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig11423:4010..4650+

>mRNA_H-paniculata_contig11423.928.1 ID=mRNA_H-paniculata_contig11423.928.1|Name=mRNA_H-paniculata_contig11423.928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig11423:4010..4650+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTGGTTGGAGAGTGAGGAAGTTGTAGCGGAGCAGGACGGAGCGAC
CCCCCACACGGAGAAAGACACGCCGCGGAAGCTCAACGAACTCGAGAGGG
ACGGGGGGTGGGACTTCAATCTCGAAACTCAGCCTGCGCAGTCACCAGAT
CTCAACATCAACGATTTGGGGCTCTTTGCATATCTGAAAATTAGGTTTCG
GAGGGAGCGTTACGGTACGATAGACGGCCTTGTGGAGGGAGCAAAGAGCA
TGTACGATGCGTGCGACGCGACGACCTTAGAGAGGATGTGGCAGAGCCTC
TTTCAGCGGTACAATCAGATCTTGAAGGCGCTAGGAGGAAACGATTTCGA
GGTAGAGGACATTGAAACCAAGGAAAGGCAGCGTGCGGGAAGTCTGCCAC
AATCGGTCGACCGAGAGACTTTCGACGCGGCGATAAAATGGTGGATTGAT
GGGAAAGAGTAAATGCCGTGGTTGGAGAGTGAGGAAGTTGTAGCGGAGCA
GGACGGAGCGACCCCCCACACGGAGAAAGACACGCCGCGGAAGCTCAACG
AACTCGAGAGGGACGGGGGGTGGGACTTCAATCTCGAAACTCAGCCTGCG
CAGTCACCAGATCTCAACATCAACGATTTGGGGCTCTTTGCATATCTGAA
AATTAGGTTTCGGAGGGAGCGTTACGGTACGATAGACGGCCTTGTGGAGG
GAGCAAAGAGCATGTACGATGCGTGCGACGCGACGACCTTAGAGAGGATG
TGGCAGAGCCTCTTTCAGCGGTACAATCAGATCTTGAAGGCGCTAGGAGG
AAACGATTTCGAGGTAGAGGACATTGAAACCAAGGAAAGGCAGCGTGCGG
GAAGTCTGCCACAATCGGTCGACCGAGAGACTTTCGACGCGGCGATAAAA
TGGTGGATTGATGGGAAAGAGTAA
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