mRNA_H-paniculata_contig34459.9189.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34459.9189.1
Unique NamemRNA_H-paniculata_contig34459.9189.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34459.9189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34459contigH-paniculata_contig34459:629..901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34459.9189.1prot_H-paniculata_contig34459.9189.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34459 629..889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.7517314-CDS-H-paniculata_contig34459:628..7341622930062.7517314-CDS-H-paniculata_contig34459:628..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34459 629..734 -
1691481131.4565313-CDS-H-paniculata_contig34459:628..7341691481131.4565313-CDS-H-paniculata_contig34459:628..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34459 629..734 -
1622930062.7876232-CDS-H-paniculata_contig34459:782..8891622930062.7876232-CDS-H-paniculata_contig34459:782..889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34459 783..889 -
1691481131.468349-CDS-H-paniculata_contig34459:782..8891691481131.468349-CDS-H-paniculata_contig34459:782..889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34459 783..889 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.814716-UTR-H-paniculata_contig34459:889..9011622930062.814716-UTR-H-paniculata_contig34459:889..901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34459 890..901 -
1691481131.4783874-UTR-H-paniculata_contig34459:889..9011691481131.4783874-UTR-H-paniculata_contig34459:889..901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34459 890..901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34459.9189.1

>prot_H-paniculata_contig34459.9189.1 ID=prot_H-paniculata_contig34459.9189.1|Name=mRNA_H-paniculata_contig34459.9189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MKSNGVQLDVITYNSVISAYRAGGQWQRALALFEEIGGGTVRPDLTTYTA
VITACVAGGQWQRGLDIFNDM
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mRNA from alignment at H-paniculata_contig34459:629..901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34459.9189.1 ID=mRNA_H-paniculata_contig34459.9189.1|Name=mRNA_H-paniculata_contig34459.9189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig34459:629..901- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTCCGGCAGATGAAATCGAACGGCGTGCAGCTGGACGTGATCACCTA
CAACTCAGTAATCTCAGCGTACAGGGCGGGCGGGCAGTGGCAACGAGCCC
TGGCTCTCTTCGAGGAGATGTGCTACCCGCCCCGCTGGCAGCCGCAGCGC
CGGGGGGGGTTAGGGAGCGGAGGTGGTACCGTCAGGCCCGACCTTACGAC
CTACACCGCGGTCATCACTGCGTGCGTTGCAGGAGGACAGTGGCAGAGAG
GATTGGATATTTTCAACGATATG
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Coding sequence (CDS) from alignment at H-paniculata_contig34459:629..901-

>mRNA_H-paniculata_contig34459.9189.1 ID=mRNA_H-paniculata_contig34459.9189.1|Name=mRNA_H-paniculata_contig34459.9189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig34459:629..901- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATCGAACGGCGTGCAGCTGGACGTGATCACCTACAACTCAGTAAT
CTCAGCGTACAGGGCGGGCGGGCAGTGGCAACGAGCCCTGGCTCTCTTCG
AGGAGATATGAAATCGAACGGCGTGCAGCTGGACGTGATCACCTACAACT
CAGTAATCTCAGCGTACAGGGCGGGCGGGCAGTGGCAACGAGCCCTGGCT
CTCTTCGAGGAGATCGGAGGTGGTACCGTCAGGCCCGACCTTACGACCTA
CACCGCGGTCATCACTGCGTGCGTTGCAGGAGGACAGTGGCAGAGAGGAT
TGGATATTTTCAACGATATGCGGAGGTGGTACCGTCAGGCCCGACCTTAC
GACCTACACCGCGGTCATCACTGCGTGCGTTGCAGGAGGACAGTGGCAGA
GAGGATTGGATATTTTCAACGATATG
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