prot_H-paniculata_contig34459.9189.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig34459.9189.1
Unique Nameprot_H-paniculata_contig34459.9189.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length71
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34459.9189.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..71
e-value: 6.8E-20
score: 73.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..36
e-value: 2.0E-5
score: 22.4
coord: 47..71
e-value: 5.1E-5
score: 21.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 9..55
e-value: 2.6E-10
score: 40.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 10.775
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..71
score: 9.262
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34459contigH-paniculata_contig34459:629..889 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34459.9189.1mRNA_H-paniculata_contig34459.9189.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig34459 629..901 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig34459.9189.1 ID=prot_H-paniculata_contig34459.9189.1|Name=mRNA_H-paniculata_contig34459.9189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MKSNGVQLDVITYNSVISAYRAGGQWQRALALFEEIGGGTVRPDLTTYTA
VITACVAGGQWQRGLDIFNDM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat