mRNA_H-paniculata_contig3433.9166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3433.9166.1 vs. uniprot
Match: D8LHP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP8_ECTSI) HSP 1 Score: 535 bits (1378), Expect = 3.310e-163 Identity = 394/634 (62.15%), Postives = 435/634 (68.61%), Query Frame = 1
Query: 2122 DGSVCVEVPVGREDEGLLLGGGRVLHKLKEELGGTLEYRRGEGVVLVYGQQSEGGPAKAAACVRTALLLSDGGGGARAEEYAMARLSMDDLLAECIALKGLRQTGGGARGNLNNSWASSSP-----------------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT--SNIPEGEYPPEPGSLRIIGETFGCVIDVAGEVAAEXXXXXXXXXXXXXXXXXXXXXNRESHHLVRPVGSATRVRPQDVLIWGPSGSVVEAKEAVAALVSGNACSEVVVGAARIKRRDRGFWVNCETM--ASSVTIEVDHKRGSVWVRGRPEAVEEGRKDFQNKLASLFPGDFLAVPMPRAALKDLANIKDLASAAAEARADHKKKSQAVNSKNDKDGSNVDGLG-MIDCADEEGGVELWADWPCSCVRLRGEPASVRCAAKALYASLAEWKALEVSVRVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARTELDAKEANRVLKLKVNALSLRRPELHPPRTVVPSTAPRSSPILVVSPALSDI-SEISAGSSSXXXXXXXXXXXXXXXXXIHERELTDPFDELQAFFAGESLPNACSSSTEGKKRSCVFDGVEDVPS 3954
DG +E+PVGREDEGLLLGGGRVLHKLKEELGGTLEYRR GVV VYGQQ GGP KAAACVRTALLL G G RA++Y +ARL MDDLLAECIALKGL+Q G + G + S A++ P D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T SN+P+GEYPPE SLRIIGE FGCVIDV GE AA XXXXXXXXXXXXX ++ ++ VGSAT V QD+LIWGP+G V EAK+AV +LVSG+A +EVVVG RI RRDRGFWVNCETM ++EVDHKRG V VRG PE VEEGRK+FQ+KLASLFPGDFLAVPMPRAALKDLA+ + L AA++A VDG D DE GGVELWADWP SCVRLRGEPA+VR AAKALYA+LA W LEVSV VDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRAR E +AKEANRVLKLK+ +L + + A +P+L SP LS SE S S ELTD F+ELQAFF G S+ KRSCVFDGVEDVPS
Sbjct: 44 DGMRPIEIPVGREDEGLLLGGGRVLHKLKEELGGTLEYRRSHGVVCVYGQQ--GGPRKAAACVRTALLLRSGRGEPRADKYDLARLCMDDLLAECIALKGLKQAGTASPGTSSTSSATTCPGSYSDEGGSEGSCSPGTDPWSPIQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVASNLPDGEYPPETSSLRIIGEKFGCVIDVVGEAAAXXXXXXXXXXXXXXEGGRGGA-GADAISPLQAVGSATPVGHQDILIWGPAGVVGEAKDAVCSLVSGSASAEVVVGVGRIGRRDRGFWVNCETMPGGGGASLEVDHKRGVVVVRGLPEEVEEGRKEFQDKLASLFPGDFLAVPMPRAALKDLADAQGLTRAASQAGV-------------------VDGRDERPDGCDEAGGVELWADWPFSCVRLRGEPATVRRAAKALYAALAVWNTLEVSVTVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARNEDEAKEANRVLKLKLKVAALAQRRSEQMNAANSAAAAPKAPVL--SPGLSSTHSERSCASVEDGPRL----------------ELTDAFEELQAFFGGGPPDGGVPSAPT--KRSCVFDGVEDVPS 635
BLAST of mRNA_H-paniculata_contig3433.9166.1 vs. uniprot
Match: D7FTS7_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS7_ECTSI) HSP 1 Score: 124 bits (312), Expect = 7.750e-25 Identity = 100/288 (34.72%), Postives = 145/288 (50.35%), Query Frame = 1
Query: 2857 VLIWGPSGSVVEAKEAVAALVSGNACSEVVVGAARIKRRDRGFWVNCETMASSVTIEVDHKRGSVWVRGRPEAVEEGRKDFQNKLASLFPGDFLAVPMPRAALKDLANIKDLASAAAEAR---------ADHKKKSQAVNSKNDKDGSNVDGLGMIDCADE------EGGVELWADWPCSCVRLRGEPASVRCAAKALYASLAEWKALEVSVRVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARTELDAKEANRVLKLKVNALSLRRPELHPPRTVV 3675
V+I G G V +A++A+ ALV G EV +G W + + VTI D R S+ V G P AVE R++ LA F G+F+AVP+PR AL ++A LA AAA D K+ + A G + LG + A EG V+L ADWPCSCVR+RGE A+V A + +L++W AL V+ V+ + L + + + +S +MG +L + GV GRA +E +A++A R L+ +V+ L RR + P VV
Sbjct: 369 VMIRGLPGLVDKARDALVALVLGREDGEVALGEEAAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALHEVATPLRLADAAAXXXXXXXSSPRTGDGKRTAAAA-------GQIAEVLGPMGVAAAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVGEINTALSKWSALAVAAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVD-GVCSGRAASEEEARDATRKLEERVSELRARRAVVRVPPEVV 648
BLAST of mRNA_H-paniculata_contig3433.9166.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.440e-23 Identity = 101/288 (35.07%), Postives = 142/288 (49.31%), Query Frame = 1
Query: 2857 VLIWGPSGSVVEAKEAVAALVSGNACSEVVVGAARIKRRDRGFWVNCETMASSVTIEVDHKRGSVWVRGRPEAVEEGRKDFQNKLASLFPGDFLAVPMPRAALKDLANIKDLASAA---------AEARADHKKKSQAVNSKNDKDGSNVDGLGMIDCADE------EGGVELWADWPCSCVRLRGEPASVRCAAKALYASLAEWKALEVSVRVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARTELDAKEANRVLKLKVNALSLRRPELHPPRTVV 3675
V+I G G V +A++A+ ALV G EV +G W + + VTI D R S+ V G P AVE RK+ LA G F+AVP+PR AL ++A LA AA + D K+ + A G + LG A EG V+L ADWPCSCVR+RGE A+V A + +L+ W AL V+ V+ + LL + + + +S +MG +L + GV GRA +E +A++A R L+ +VN L RR + P VV
Sbjct: 1060 VMIRGLPGQVDKARDALVALVLGWEDGEVALGEEGAAALGADSWRKIQDSSGRVTITPDKSRCSLRVSGPPAAVEACRKELYTMLADASRGKFVAVPIPREALHEVATSLRLADAAXXXXXXXXSSPKTGDGKRTAAAA-------GQIAEVLGPTGIASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEINTALSMWSALTVTAEVEEWMEPELLGKQRKAIKKLSQSMGGVVLNVVD-GVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVV 1339 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3433.9166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3433.9166.1 >prot_H-paniculata_contig3433.9166.1 ID=prot_H-paniculata_contig3433.9166.1|Name=mRNA_H-paniculata_contig3433.9166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1554bp MLLDTVAVADISAGEGAGWEGGERLDDLEFITCATEDTAMHIDNSNSATVback to top mRNA from alignment at H-paniculata_contig3433:56..12844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3433.9166.1 ID=mRNA_H-paniculata_contig3433.9166.1|Name=mRNA_H-paniculata_contig3433.9166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12789bp|location=Sequence derived from alignment at H-paniculata_contig3433:56..12844- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3433:56..12844- >mRNA_H-paniculata_contig3433.9166.1 ID=mRNA_H-paniculata_contig3433.9166.1|Name=mRNA_H-paniculata_contig3433.9166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9324bp|location=Sequence derived from alignment at H-paniculata_contig3433:56..12844- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |