mRNA_H-paniculata_contig34274.9156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.530e-51 Identity = 107/245 (43.67%), Postives = 141/245 (57.55%), Query Frame = 1
Query: 4 ERTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVA------RANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGG-TPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPS---YRIYNPENKSVQLSRHVRFDEEDF 705
ER EPLELVHTD+ G V+ +S GG R+A F DDY+R R VY ++ SE+L LK++ +D+ + N LR R SD GGEYT F+ FC +GI Q+F Y Q NG+ E+SWH + MARA I A + + +WA+A+ +A Y R+ G TPY K +G+ HLR FGC A V S +R K DD+A G+ +GYD+ + YRIY P S HV FDEE F
Sbjct: 76 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAFVHDTSVRRGKFDDRAVEGILIGYDDIGNNPKCYRIYIPSLGRYIRSGHVTFDEETF 318
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 185 bits (469), Expect = 3.490e-51 Identity = 109/245 (44.49%), Postives = 143/245 (58.37%), Query Frame = 1
Query: 4 ERTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVA------RANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGG-TPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPS---YRIYNPENKSVQLSRHVRFDEEDF 705
ER EPLELVHTD+ G V+ +S GG R+A F DDY+R R VY ++ SE+L LK++ +D+ + N LR R SD GGEYT F+ FC +GI Q+F Y Q NGV E+SWH + MAR+ I A + +R+WA+A+ +A Y L R+ T G TPY K +G+ H R FGC A V S +R K DD+A G+ +GYD+ + YRIY P S HV FDEE F
Sbjct: 76 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAFVHDTSVRRGKFDDRAVEGIMIGYDDIGNNPKCYRIYIPSIGKYIKSGHVTFDEETF 318
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: A0A6A3BSI6_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BSI6_HIBSY) HSP 1 Score: 187 bits (474), Expect = 1.680e-50 Identity = 99/234 (42.31%), Postives = 139/234 (59.40%), Query Frame = 1
Query: 1 EERTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDEE 699
E R +PLEL+HTD+ GS+ S G + +F+DD+SR VY L+Q SE K+F+ V R +G +IK +SD+GGE+T + F++FC NGI + + QQNGV ER +I +MAR+ + + + + +WA+AV AVY R+PTR G TP E W G P HLR FG V ++ KLDDK + + +GYD S Y++YNP NK +SR V F+EE
Sbjct: 399 ETRAKKPLELIHTDVCGSIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKVAVERESGRKIKAMRSDRGGEFTSREFQEFCEANGIRRPMIVPRSPQQNGVAERKNITILDMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVWGKTPQEAWSGRKPGISHLRTFGSITHVHVPDERITKLDDKNESFIFIGYDANSKGYKLYNPNNKKFVISRDVVFNEE 632
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: A0A2Z7CM54_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CM54_9LAMI) HSP 1 Score: 185 bits (469), Expect = 4.650e-50 Identity = 98/232 (42.24%), Postives = 137/232 (59.05%), Query Frame = 1
Query: 7 RTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDEE 699
R PLEL+H+D+ G + S G + IF+DD+SR VY +++ SE T K+F+ V + +G +I+ +SD+GGE+T F++FC +NGI + + Y+ QQNGV ER +I M R+ + NM + +WA+AV AVY R T+ NG TP E G P HLRVFG A ++R KLDDK+ V +GYD S Y++YNP N + LSR V FDEE
Sbjct: 471 RAQHPLELIHSDVCGPIKPSSLGKSNYFIIFIDDFSRKTWVYFIKEKSEVFETFKKFKIMVEKQSGYQIQALRSDRGGEFTSNEFKKFCEDNGIHRPMTTPYSPQQNGVSERKNRTILNMVRSMLKRKNMPKEFWAEAVTCAVYLTNRWHTKSVNGKTPNEDCSGYKPNVAHLRVFGSIAYAHVPDEKRTKLDDKSARYVFIGYDTNSKCYKLYNPNNGKIILSRDVEFDEE 702
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: A0A2K3KIW4_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KIW4_TRIPR) HSP 1 Score: 170 bits (431), Expect = 9.990e-49 Identity = 88/231 (38.10%), Postives = 135/231 (58.44%), Query Frame = 1
Query: 7 RTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDE 696
R + LEL+H+DI G + +S GG R+ F DD+SR +Y L++ S AL K F+ V + I+ ++D+GGEYT AF FC++ GI+++ AYT QQNGV ER ++ + R+ + ++ +R+W +A++ A Y + R+PT TP E W G P H +VFGC A V QR+KLDDK+ + +G E S +Y++Y+P + +SR V F+E
Sbjct: 33 RASARLELIHSDICGPITPQSNGGSRYFITFTDDFSRKTWIYVLKEKSLALDCFKSFKALVEKEAKCAIQCLRTDRGGEYTSNAFSDFCSKEGIKRQLIAAYTPQQNGVSERKNRTLLNIVRSMIHARSVPKRFWPEAIKWATYVMNRSPTLSVKDMTPEEAWSGRKPSVHHFKVFGCVAHVHIHDSQRKKLDDKSKKCILLGVSEESKAYKLYDPIENKIIISRDVIFEE 263
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 180 bits (457), Expect = 3.270e-48 Identity = 93/232 (40.09%), Postives = 143/232 (61.64%), Query Frame = 1
Query: 7 RTTEPLELVHTDIAGSVDK-SFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDEE 699
++T+ L+LVHTDI G ++ S G R+ F+DD+SR Y L + SE K+F+ +V R +G ++ +SD+GGEY + F ++C E GI+++ + AYT QQNGV ER S+ M R ++ ++ R++W +AV+ AVY L R+P++ N TP EKW P +HLR+FG A + Q+R KLD+K+ V G + S +YR+Y+P + +SR V+FDEE
Sbjct: 491 KSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEE 722
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 180 bits (456), Expect = 3.920e-48 Identity = 106/245 (43.27%), Postives = 141/245 (57.55%), Query Frame = 1
Query: 4 ERTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVA------RANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGG-TPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPS---YRIYNPENKSVQLSRHVRFDEEDF 705
ER EPLELVHTD+ G V+ +S GG R+A F DDY+R R VY ++ SE+L LK++ +D+ + N LR R SD GGEYT F+ FC +GI Q+F Y Q NG+ E+SWH + MARA I A + + +WA+A+ +A Y R+ G TPY K +G+ +H R FGC A V S +R K DD+A G+ +GYD+ + YRIY P S HV FDEE F
Sbjct: 122 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTATYIWNRSRNSTLGAGETPYYKMFGKHASVNHFRTFGCKAFVHDTSVRRGKFDDRAVEGILIGYDDIGNNPKCYRIYIPSLGRYIRSGHVTFDEETF 364
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: A0A151R9Z3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R9Z3_CAJCA) HSP 1 Score: 172 bits (437), Expect = 4.230e-48 Identity = 92/233 (39.48%), Postives = 138/233 (59.23%), Query Frame = 1
Query: 1 EERTTEPLELVHTDIAGSVD-KSFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDE 696
E R E L L+HTD+ G + +SF G ++ F+DD+SR VY L++ E T K+F+ V + +K +SD+GGE+T F ++C E+GI++ + Y+ QQNGV ER +I +M R+ + NM +++WA+AV+ AVY R P TP E W G P HLRVFG A QQR KL+D++ + +GYDE S +Y++++P+NK V +SR V +E
Sbjct: 82 EYRAKEQLGLIHTDLCGPITPESFSGKKYFVSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVEKEMSTFVKAVRSDRGGEFTSVEFNKYCEEHGIKRFLTAPYSPQQNGVAERKNRTILDMVRSMLKGKNMPKKFWAEAVQCAVYVQNRCPHAKLGEKTPQEIWSGMKPSVSHLRVFGSLAYGQVPRQQRTKLEDRSKKYIFIGYDEKSKAYKLFDPDNKKVVVSRDVHVEE 314
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: A0A6L2N7P6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2N7P6_TANCI) HSP 1 Score: 179 bits (453), Expect = 1.020e-47 Identity = 96/226 (42.48%), Postives = 134/226 (59.29%), Query Frame = 1
Query: 22 LELVHTDIAGSVDK-SFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDE 696
L+L+H D+ G + S GG R+ +F+DDYSRM VY L+ SEA K+F+ V + +G IK Q+D+GGE+ F FC E GI +E + YT QQN ER +I EMAR+ M + + +WA+AV ++VY L +PT+ TPY+ W G PK HL VFGC A + S R KLD+K+ + VGY S +Y++Y+P N V +SR V F+E
Sbjct: 506 LDLIHADLCGPMSVISIGGSRYFLLFIDDYSRMSWVYFLKNKSEAFNYFKKFKSYVEKQSGRNIKVIQTDRGGEFMSAEFITFCEEYGIHKELTAPYTPQQNSAAERKNRAIVEMARSMMNAKGVPKTFWAEAVATSVYLLIISPTKAVYNRTPYKAWKGNKPKVSHLCVFGCIANALLNSNSRLKLDEKSVKCIVVGYSPQSKAYKLYDPLNGKVLISRDVVFNE 731
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Match: A0A4Y1QXI2_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QXI2_PRUDU) HSP 1 Score: 176 bits (446), Expect = 3.270e-47 Identity = 92/232 (39.66%), Postives = 139/232 (59.91%), Query Frame = 1
Query: 7 RTTEPLELVHTDIAGSVDK-SFGGCRFAFIFVDDYSRMRKVYTLRQNSEALWTLKQFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSGAYTTQQNGVMERSWHSIFEMARANMITANMRRRYWAKAVRSAVYCLKRAPTRPHNGGTPYEKWYGETPKSDHLRVFGCTACVMFQSQQRRKLDDKAWTGVCVGYDEYSPSYRIYNPENKSVQLSRHVRFDEE 699
R + PLELVHTDI G + S G ++ +F DD +RM VY +R S A+ ++F+ +G +IK +SD+GGE+ F FCAE GI+++ + AY+ QQNGV ER ++ EMA++ + ++ +WA+AV +AVY L R PT+ N TP+E + G P HL++FG V+ S R KL++ + + VGY YR+++P N+ + LSR V+FDEE
Sbjct: 211 RASYPLELVHTDICGPMKTDSISGNKYFLLFTDDCTRMSWVYFIRNKSSAMECFRKFKAMTELQSGYKIKGLRSDRGGEFLSSEFNSFCAEVGIQRQLTMAYSPQQNGVAERKNRTVVEMAKSMLHEKSIPYEFWAEAVNTAVYLLNRCPTKSLNKVTPFEAYTGRKPGIAHLKIFGSPCHVLIPSALRHKLEENSHKCIFVGYGLCEKGYRLFDPSNRKIMLSRDVKFDEE 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34274.9156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34274.9156.1 >prot_H-paniculata_contig34274.9156.1 ID=prot_H-paniculata_contig34274.9156.1|Name=mRNA_H-paniculata_contig34274.9156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp EERTTEPLELVHTDIAGSVDKSFGGCRFAFIFVDDYSRMRKVYTLRQNSEback to top mRNA from alignment at H-paniculata_contig34274:517..1254- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34274.9156.1 ID=mRNA_H-paniculata_contig34274.9156.1|Name=mRNA_H-paniculata_contig34274.9156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig34274:517..1254- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34274:517..1254- >mRNA_H-paniculata_contig34274.9156.1 ID=mRNA_H-paniculata_contig34274.9156.1|Name=mRNA_H-paniculata_contig34274.9156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig34274:517..1254- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |