mRNA_H-paniculata_contig34214.9143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34214.9143.1
Unique NamemRNA_H-paniculata_contig34214.9143.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A835Z1C5_9STRA (Costars domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.580e-14
Identity = 29/40 (72.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:   19 VGVTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            +GVT+G LFDDEEGQ +FEA++GTL+AAKKRG+VDF+GQ+
Sbjct:   28 IGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQM 67          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: G0QMS5_ICHMG (Costars domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QMS5_ICHMG)

HSP 1 Score: 63.5 bits (153), Expect = 4.080e-12
Identity = 26/38 (68.42%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   25 VTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            V FG+LFDDE+ QQ++EA+VGTL+AAKK+G+VDF+GQ+
Sbjct:   30 VPFGQLFDDEKAQQYYEALVGTLKAAKKQGVVDFQGQI 67          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: B7FY17_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY17_PHATC)

HSP 1 Score: 61.6 bits (148), Expect = 3.390e-11
Identity = 25/38 (65.79%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   25 VTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            V FG+LFDD+  QQF+EA+VGTL++AK+RG++DFKGQ+
Sbjct:   41 VKFGELFDDDNVQQFYEALVGTLKSAKRRGVIDFKGQM 78          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A5B8MVS8_9CHLO (Costars domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVS8_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.190e-10
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1
Query:   25 VTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            V FG LF+DE+ +Q++EAIVGTL+AAKKRG +DFKGQ+
Sbjct:   33 VKFGVLFEDEKVEQYYEAIVGTLKAAKKRGFIDFKGQM 70          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A6G0X2G9_9STRA (Costars domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2G9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.870e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 ADFLVAVGVTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            AD     GVTFG LFDDE  Q  FEA++GTLRAAK++ ++DF+GQ+
Sbjct:   24 ADGQKQFGVTFGILFDDERCQDLFEALMGTLRAAKRKKVIDFQGQL 69          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A067CJ91_SAPPC (Costars domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ91_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 5.500e-10
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    4 DFLVAVGVTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            D  VA GVTFG+LFDDE     FEA++GTLRAAK++ ++D+ GQ+
Sbjct:   25 DGSVAFGVTFGELFDDERCVDLFEALMGTLRAAKRKKVIDYPGQL 69          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A1V9YE86_9STRA (Costars family protein ABRACL isoform X2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YE86_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.340e-9
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 ADFLVAVGVTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            AD     GVTFG+LFDDE     FEA++GTLRAAK++ ++D+ GQ+
Sbjct:   24 ADGKTVFGVTFGELFDDERCVDLFEALMGTLRAAKRKKVIDYPGQL 69          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A7R9ZT53_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT53_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.790e-9
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1
Query:   25 VTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            V FG+LFDD+E Q ++EA+VGTL++AKKRG++ FKGQ+
Sbjct:  106 VLFGELFDDDEVQNYYEALVGTLKSAKKRGLIAFKGQM 143          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A7S2U4Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U4Q9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.900e-9
Identity = 24/38 (63.16%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   25 VTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            V FG+LF+DEE +QF+EA+VGTL++AKKRG++ F+GQ+
Sbjct:    3 VLFGELFEDEEVEQFYEALVGTLKSAKKRGVIVFRGQI 40          
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Match: A0A7S1UZ17_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ17_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   25 VTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV 138
            V FGKLFDD++ QQ++EA+VGTL+ AKKRG + FKGQ+
Sbjct:   52 VLFGKLFDDDQAQQYYEALVGTLKCAKKRGQITFKGQM 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34214.9143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1C5_9STRA1.580e-1472.50Costars domain-containing protein (Fragment) n=1 T... [more]
G0QMS5_ICHMG4.080e-1268.42Costars domain-containing protein n=1 Tax=Ichthyop... [more]
B7FY17_PHATC3.390e-1165.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A5B8MVS8_9CHLO1.190e-1068.42Costars domain-containing protein n=1 Tax=Chloropi... [more]
A0A6G0X2G9_9STRA3.870e-1058.70Costars domain-containing protein n=1 Tax=Aphanomy... [more]
A0A067CJ91_SAPPC5.500e-1057.78Costars domain-containing protein n=2 Tax=Saproleg... [more]
A0A1V9YE86_9STRA2.340e-954.35Costars family protein ABRACL isoform X2 n=1 Tax=A... [more]
A0A7R9ZT53_9STRA2.790e-963.16Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S2U4Q9_9STRA2.900e-963.16Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1UZ17_9STRA3.410e-965.79Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34214contigH-paniculata_contig34214:1579..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog5932.XP_004037464.1
Preferred nameABRACL
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005623,GO:0008150,GO:0009653,GO:0030587,GO:0031143,GO:0031288,GO:0032502,GO:0032879,GO:0032970,GO:0040012,GO:0042995,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0051270,GO:0051703,GO:0051704,GO:0065007,GO:0090702,GO:0099120,GO:0120025,GO:2000145
EggNOG free text desc.Costars
EggNOG OGs3ZFPH@5878,KOG3376@1,KOG3376@2759
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.2963288-CDS-H-paniculata_contig34214:1578..17161622930057.2963288-CDS-H-paniculata_contig34214:1578..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34214 1579..1716 -
1691481129.0380843-CDS-H-paniculata_contig34214:1578..17161691481129.0380843-CDS-H-paniculata_contig34214:1578..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34214 1579..1716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34214.9143.1prot_H-paniculata_contig34214.9143.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34214 1579..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34214.9143.1

>prot_H-paniculata_contig34214.9143.1 ID=prot_H-paniculata_contig34214.9143.1|Name=mRNA_H-paniculata_contig34214.9143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
ADFLVAVGVTFGKLFDDEEGQQFFEAIVGTLRAAKKRGIVDFKGQV
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mRNA from alignment at H-paniculata_contig34214:1579..1716-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34214.9143.1 ID=mRNA_H-paniculata_contig34214.9143.1|Name=mRNA_H-paniculata_contig34214.9143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig34214:1579..1716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGATTTTCTGGTGGCAGTCGGAGTTACGTTCGGTAAGCTCTTCGACGA CGAGGAGGGTCAGCAGTTCTTCGAGGCGATCGTGGGAACTCTCCGTGCGG CCAAGAAACGCGGTATCGTCGACTTCAAGGGGCAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34214:1579..1716-

>mRNA_H-paniculata_contig34214.9143.1 ID=mRNA_H-paniculata_contig34214.9143.1|Name=mRNA_H-paniculata_contig34214.9143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig34214:1579..1716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGATTTTCTGGTGGCAGTCGGAGTTACGTTCGGTAAGCTCTTCGACGA
CGAGGAGGGTCAGCAGTTCTTCGAGGCGATCGTGGGAACTCTCCGTGCGG
CCAAGAAACGCGGTATCGTCGACTTCAAGGGGCAAGTGGCTGATTTTCTG
GTGGCAGTCGGAGTTACGTTCGGTAAGCTCTTCGACGACGAGGAGGGTCA
GCAGTTCTTCGAGGCGATCGTGGGAACTCTCCGTGCGGCCAAGAAACGCG
GTATCGTCGACTTCAAGGGGCAAGTG
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