mRNA_H-paniculata_contig3419.9133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3419.9133.1
Unique NamemRNA_H-paniculata_contig3419.9133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: D7FKK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK5_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 3.690e-73
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1
Query:    1 MLQQSLDDPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 375
            MLQQSLDDP LEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAM+EMH+VMVAVQ SVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR
Sbjct:  246 MLQQSLDDPLLEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMKEMHQVMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 370          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A7S1UGU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGU7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.450e-50
Identity = 78/124 (62.90%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 MLQQSLDDPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 372
            ML   LDDP LE +V+ Y+ GAVL NL  DS +DE W NE R V+ +FVNLGL  Q LLAA +Y+EAM++++ V+ +VQ +VY YEGSINKFLMDDKGSTL+A +GLPPV H DDP R VLAAL
Sbjct:    2 MLHTELDDPTLESRVRAYVAGAVLPNLNADSRDDESWGNETRYVSTMFVNLGLTSQNLLAAGLYNEAMQQVNDVLESVQRAVYRYEGSINKFLMDDKGSTLIACFGLPPVSHEDDPLRAVLAAL 125          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A6H5JI44_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI44_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.340e-47
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 1
Query:    1 MLQQSL-DDPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAV 312
            MLQQ+L DDP L+VK  GYIP AV+RNLR DSPEDE WSNEIRRVTVLFVNLGL +QTLLAAA YDEAM+EMH+VMVAVQ SVYEYEGSINKFLMDDKGSTL+AV
Sbjct:   41 MLQQTLEDDPLLDVKATGYIPSAVMRNLRLDSPEDEQWSNEIRRVTVLFVNLGLIQQTLLAAAFYDEAMKEMHQVMVAVQESVYEYEGSINKFLMDDKGSTLIAV 145          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A7R9YAC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.030e-43
Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 MLQQSLDDPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 372
            M    L+DP+LE +V+ Y+ GA+L NL  DS +DE W NE R V+ +FVNLGL  + LLAA +YDEAM ++H V+ + Q +VY YEGSINKFLMDDKGSTL+A +GLPPV H DD  R VLAA+
Sbjct:   69 MQVSQLEDPSLENRVRAYVAGAILPNLNADSRDDESWGNETRYVSTMFVNLGLSSENLLAAGLYDEAMFQVHNVLTSAQRAVYRYEGSINKFLMDDKGSTLIACFGLPPVSHEDDSLRAVLAAI 192          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A482UIP1_9ARCH (Guanylate cyclase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UIP1_9ARCH)

HSP 1 Score: 142 bits (358), Expect = 1.440e-38
Identity = 66/121 (54.55%), Postives = 93/121 (76.86%), Query Frame = 1
Query:   16 LDDPALEV--KVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 372
            L+D   EV  +++ Y+ GA+L  + PD P+ E W +++R VTVLFVNLGLK+  +LAA+ YD+AM +MH+V+ A Q++VY+YEG++NK L DDKGST++AV+GLPP+ H DD TRGVL  L
Sbjct:  148 LEDAGDEVERRLRNYVAGAILPWIDPDVPDKEVWGSDLRNVTVLFVNLGLKDMDMLAASKYDDAMVKMHEVLRAAQSAVYQYEGAVNKCLNDDKGSTMIAVFGLPPLSHEDDATRGVLCGL 268          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A5A8CC48_CAFRO (Phosphodiesterase n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC48_CAFRO)

HSP 1 Score: 144 bits (363), Expect = 1.780e-37
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    4 LQQSLDDPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 372
            ++  L   A E ++K Y PGA+   + PD+ E E W  ++R V+VLFVNLGL+   LLAAA Y E M  +H+V+  VQ++VY YEGS+NKFLMDDKGSTL+AV+GLPP+ H DD TR VLAAL
Sbjct:  236 IELQLAGRAAEARLKQYTPGAIQTWISPDALELESWGGDLRNVSVLFVNLGLRNDDLLAAAKYREPMHRVHEVLRTVQSAVYRYEGSVNKFLMDDKGSTLIAVFGLPPISHHDDSTRAVLAAL 358          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A7S2R6Q5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Q5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.710e-33
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1
Query:   25 PALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 375
            P LE  +  Y+PG+V  ++  ++ ++E W NE+RRV  LFVNLGL++  LL+AA  D  + ++  V+  VQ +VY+YEGSINKFLMDDKGSTL+A +GL P GH DD  RGVLAALR
Sbjct:  190 PNLEQGIDRYVPGSVTAHI-DETNDEEKWYNEVRRVATLFVNLGLEDAMLLSAAYDDHVLGQVQCVLEGVQKAVYQYEGSINKFLMDDKGSTLIACFGLTPNGHEDDAVRGVLAALR 305          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A7S2C3L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3L5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.230e-30
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   97 EDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVY--DEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 372
            E   W+NE RR+ VLFVNLGLK+  LLAA     ++AM+++H V+V VQ +VY+YEGS+NKFLMDDKGSTL+A +GL PV H DD  R  LA++
Sbjct:    6 ESMKWANETRRIAVLFVNLGLKDHHLLAAGDVRTEDAMKQVHDVLVGVQKAVYKYEGSVNKFLMDDKGSTLLACFGLSPVSHIDDALRACLASI 99          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: F0XWN7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWN7_AURAN)

HSP 1 Score: 123 bits (309), Expect = 3.350e-30
Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   22 DPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVNLGLKEQTLLAAAVY-----DEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 375
            + ALEV+++ YIP +VL  L+ DS E E W+NEI    V+FVNLG+ E  L  AA          +  +H    A Q +VYEYEGS+NKFL DDKGSTL+A +GLPP  H DDP R VLAALR
Sbjct:  795 EAALEVRLERYIPRSVLAALQRDSRECEKWANEITSCVVVFVNLGISEAMLNGAADARSDPDGSRLRFLHDAFGAAQKAVYEYEGSVNKFLHDDKGSTLIACWGLPPTTHVDDPVRAVLAALR 917          
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Match: A0A7S0H2E7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H2E7_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 1.210e-27
Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KVKGYIPGAVLRNLRPDSPE-DEHWSNEIRRVTVLFVNLGLKEQTLLAAAVY--DEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 375
            +V  Y+PGAV    RP   + +E W++E+R +TVLFVNLGL +    AA +Y  D+ ++ +H +M  VQ +VY+YEGS+NKFLMDDKGSTL+AV+GLPP+ H +DP RG+L++++
Sbjct:  274 RVLQYVPGAV----RPYVKDFEESWADELRVITVLFVNLGLVKG---AAELYNNDDDLKRIHHIMQTVQKAVYKYEGSLNKFLMDDKGSTLIAVFGLPPLAHENDPVRGLLSSIQ 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3419.9133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKK5_ECTSI3.690e-7396.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UGU7_9STRA5.450e-5062.90Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6H5JI44_9PHAE1.340e-4783.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7R9YAC5_9STRA1.030e-4358.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482UIP1_9ARCH1.440e-3854.55Guanylate cyclase domain-containing protein (Fragm... [more]
A0A5A8CC48_CAFRO1.780e-3756.10Phosphodiesterase n=7 Tax=Cafeteria roenbergensis ... [more]
A0A7S2R6Q5_9STRA6.710e-3354.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C3L5_9STRA3.230e-3058.51Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0XWN7_AURAN3.350e-3052.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0H2E7_9EUKA1.210e-2751.30Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3419contigH-paniculata_contig3419:17099..18061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.6
Seed ortholog evalue2.5e-62
Seed eggNOG ortholog2880.D7FKK5
KEGG rclassRC00295
KEGG koko:K11265
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko04024,ko04371,ko04713,ko04714,map00230,map04024,map04371,map04713,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Adenylate cyclase
EggNOG OGs2QPPT@2759,COG2114@1
EC4.6.1.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.5900946-CDS-H-paniculata_contig3419:17098..172181622930055.5900946-CDS-H-paniculata_contig3419:17098..17218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 17099..17218 +
1691481128.379685-CDS-H-paniculata_contig3419:17098..172181691481128.379685-CDS-H-paniculata_contig3419:17098..17218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 17099..17218 +
1622930055.6021054-CDS-H-paniculata_contig3419:17803..180611622930055.6021054-CDS-H-paniculata_contig3419:17803..18061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 17804..18061 +
1691481128.3975694-CDS-H-paniculata_contig3419:17803..180611691481128.3975694-CDS-H-paniculata_contig3419:17803..18061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 17804..18061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3419.9133.1prot_H-paniculata_contig3419.9133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3419 17099..18061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3419.9133.1

>prot_H-paniculata_contig3419.9133.1 ID=prot_H-paniculata_contig3419.9133.1|Name=mRNA_H-paniculata_contig3419.9133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MLQQSLDDPALEVKVKGYIPGAVLRNLRPDSPEDEHWSNEIRRVTVLFVN
LGLKEQTLLAAAVYDEAMEEMHKVMVAVQNSVYEYEGSINKFLMDDKGST
LVAVYGLPPVGHADDPTRGVLAALR*
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mRNA from alignment at H-paniculata_contig3419:17099..18061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3419.9133.1 ID=mRNA_H-paniculata_contig3419.9133.1|Name=mRNA_H-paniculata_contig3419.9133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=963bp|location=Sequence derived from alignment at H-paniculata_contig3419:17099..18061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAGCAGAGCCTGGATGATCCCGCGTTGGAAGTCAAAGTCAAGGG ATACATTCCCGGAGCAGTTCTGAGGAACTTGAGGCCGGACAGCCCAGAGG ATGAGCACTGGAGCAACGAGGTGCGAACGGAGGGACGCACGTTAGCGCTG CGCTGGAGACAGAGACACAGACAGATACATGACAGAGTTTGCTCTGCGAT GATGCGGGCATGTTTTTCAATTTTGAAAAATTATTATGCTGTTCTCCTCA GCCGTATCTTGGTTGATACCCGTAAGTAAATAACTTTCTCTGTGCCGTAA GTAAAATCGGTTGTGTTGAGCAGATTCTTATCTCCATATCTAAAACTGTT GAGAGACTGCGGTTAGAATTGTTGGAAAGCTGAAATCTGACAGACTCATA TGCGCTATTCCAAAAAGCTTTCCAATTCGTTTTTCAGGATAAATGGCCGC TCAAGGTCAGGCTAATTTTGACCATTTTTTTTTTTTTTTTTCTCCGATTT TCGCGTTTTTCCATTGGAAAAAAATACAAAAATGGTAAAATATGGCCTTT TTCCAGCTGACCGTTGCGTACCAAGGAGCGTTTTTCTTTCTATATCCAGT TCGTTACCTCACATAACAACTACTCCCCTCTGCCTTTTCCTCTACCTTTA CATTTGCCTCTCACGGTAATGACTCTCGCTCTCGCCACCGCCCTCCCTGC GGCAGATCCGGCGCGTAACAGTATTGTTCGTCAACCTGGGGCTGAAGGAA CAAACGCTGTTGGCCGCTGCCGTGTACGACGAAGCGATGGAGGAGATGCA CAAGGTCATGGTTGCTGTGCAGAACTCCGTATATGAGTACGAGGGAAGTA TCAACAAGTTCTTGATGGACGACAAGGGCTCCACGCTCGTGGCCGTGTAT GGGCTTCCCCCCGTGGGACACGCGGACGACCCTACCAGGGGAGTTTTGGC GGCACTCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3419:17099..18061+

>mRNA_H-paniculata_contig3419.9133.1 ID=mRNA_H-paniculata_contig3419.9133.1|Name=mRNA_H-paniculata_contig3419.9133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig3419:17099..18061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAGCAGAGCCTGGATGATCCCGCGTTGGAAGTCAAAGTCAAGGG
ATACATTCCCGGAGCAGTTCTGAGGAACTTGAGGCCGGACAGCCCAGAGG
ATGAGCACTGGAGCAACGAGATGCTGCAGCAGAGCCTGGATGATCCCGCG
TTGGAAGTCAAAGTCAAGGGATACATTCCCGGAGCAGTTCTGAGGAACTT
GAGGCCGGACAGCCCAGAGGATGAGCACTGGAGCAACGAGATCCGGCGCG
TAACAGTATTGTTCGTCAACCTGGGGCTGAAGGAACAAACGCTGTTGGCC
GCTGCCGTGTACGACGAAGCGATGGAGGAGATGCACAAGGTCATGGTTGC
TGTGCAGAACTCCGTATATGAGTACGAGGGAAGTATCAACAAGTTCTTGA
TGGACGACAAGGGCTCCACGCTCGTGGCCGTGTATGGGCTTCCCCCCGTG
GGACACGCGGACGACCCTACCAGGGGAGTTTTGGCGGCACTCAGGTAAAT
CCGGCGCGTAACAGTATTGTTCGTCAACCTGGGGCTGAAGGAACAAACGC
TGTTGGCCGCTGCCGTGTACGACGAAGCGATGGAGGAGATGCACAAGGTC
ATGGTTGCTGTGCAGAACTCCGTATATGAGTACGAGGGAAGTATCAACAA
GTTCTTGATGGACGACAAGGGCTCCACGCTCGTGGCCGTGTATGGGCTTC
CCCCCGTGGGACACGCGGACGACCCTACCAGGGGAGTTTTGGCGGCACTC
AGGTAA
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