prot_H-paniculata_contig34081.9107.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig34081.9107.1
Unique Nameprot_H-paniculata_contig34081.9107.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length187
Homology
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 128 bits (322), Expect = 3.550e-31
Identity = 74/192 (38.54%), Postives = 114/192 (59.38%), Query Frame = 0
Query:    1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGI-----VGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG 187
            +GL RS  D C+++ R+E     LL+A+ VDD  IAG +  V  FK  IS RF+M DLG +  +LGIE++RDR   T+++SQ  YI  +L R+   + + + TP++    +S  +    PS P+ F  +  I     +G+LMYA+ G RPDIAYA+   ++ M++P Q  +   KR+F YL+   +  +TFG
Sbjct:  282 MGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQC---PSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFG 470          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 124 bits (311), Expect = 1.620e-29
Identity = 70/183 (38.25%), Postives = 107/183 (58.47%), Query Frame = 0
Query:    5 RSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            RS  DSC+Y  + EGG   LL+  YVDD++IA +   ++D  K  +S  F MKD+G+ SR+LGI+++RDR  G + +SQ SY+ +V+KR+   E + V TP+ G  K+SA +   +  + + +      VG++MYA  G RPDIAYA+   +R M  P    +   K +  Y+    DL + F
Sbjct: 1014 RSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKY-PYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKPGIMHWEAVKWLLRYIRGTADLNLVF 1193          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A8H6XNZ2_9AGAR (Uncharacterized protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNZ2_9AGAR)

HSP 1 Score: 120 bits (302), Expect = 2.630e-28
Identity = 72/189 (38.10%), Postives = 106/189 (56.08%), Query Frame = 0
Query:    1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSF-GAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG 187
            I L ++  D C+Y+   +G  T   V V+VDDL+I    R + +  K  I   F  KDLG   +++GIE+RRDR +GTIT+SQ  Y+  +L +YG  + + + TP++  V +     AD P  P    G    I+G LMYA+   RPDIAYAV   ++   +P  E +S CKR+  YLS   + G+ +G
Sbjct: 1064 IQLVKTAVDHCVYYREHDGERT--WVTVWVDDLLILSTSRHEAERTKAEIEGLFDTKDLGEPRKIIGIEIRRDRGSGTITLSQLHYVETLLAKYGLTDAKPLATPMDPNVTLRK-VPADAPEAPAELRGQYQSIIGGLMYAAICTRPDIAYAVTTLSQYCSNPGPEHWSACKRVLRYLSGTRNYGLVYG 1249          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 117 bits (292), Expect = 5.800e-27
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 0
Query:    1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPS------EPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            +G  R  +++CLY  RD+ G+   LV VYVDDL++A   R  +DE K  ++ +F+M+DLG  S +LGI +RRDRP   I +SQ  YI  VL RYG  + +   TP+   VK SA +  D  +      E +S  +   ++G++MYA  G RPDIAY V    R   +P +  +   KR   YL    D+ + F
Sbjct: 1151 LGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSV-SYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRF 1341          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A0J7KBT5_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KBT5_LASNI)

HSP 1 Score: 115 bits (289), Expect = 1.430e-26
Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 0
Query:    9 DSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVL----GIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG 187
            D C+Y  R   G+  +L+AVYVDD+++  R   K++E K N++Q F ++DLG ++  LGIE  R+  N TI + Q  YIR++L R+G  E + V TP++  VK+       KP E    GA       ++GALMY +   RPDIA+A+   ++  +   Q  ++  KR+  YL    DLG+ F 
Sbjct:  810 DPCIY--RIGHGDNTILIAVYVDDIILVSRNLNKIEELKKNLAQEFDVRDLGEINYCLGIEFSRN--NDTIALHQSGYIRDILDRFGMTESKPVSTPMDPNVKLV------KPDENSDIGATKIPYRELIGALMYLAVSTRPDIAFAISSLSQFNDCYDQNHWNAAKRVLRYLKGTIDLGLVFS 983          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 115 bits (289), Expect = 1.440e-26
Identity = 68/188 (36.17%), Postives = 107/188 (56.91%), Query Frame = 0
Query:    2 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAG-RREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPE--SADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            G +R   D C+Y  +   G    LV +YVDD++IA   ++++ E K  +S  F MKDLG+  ++LG+E+RRDR  G +T+SQ  YI +VLKR+     + + TP+    K+S+ E   +++  E  S       VG+LMYA    RPD+A+AV   +R M +P +  +   K I  YL    ++G++F
Sbjct:  937 GYDRCSYDECVYLRKFPDGSFLYLV-LYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVKCILRYLKGTSNIGLSF 1123          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD)

HSP 1 Score: 115 bits (287), Expect = 2.690e-26
Identity = 64/186 (34.41%), Postives = 110/186 (59.14%), Query Frame = 0
Query:    2 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            G  RS +D C+Y  ++ G E  + + +YVDD+++A +++ ++ + K  +S  F MKD+G  SR+LGI+++RDR   T+ + Q  YI++VLKR+   E + V TP+    K+++ ++AD+  + +     L  VG++MYA  G RPD+AYA+   +R M  P    +   K +  YL    DL + +
Sbjct: 1008 GFIRSDSDLCVYI-KEVGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKV-PYLSAVGSVMYAMVGTRPDVAYALGLVSRFMSKPGSIHWEAVKWLLRYLRGSADLNLIY 1191          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A0G4IXE9_PLABS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXE9_PLABS)

HSP 1 Score: 114 bits (285), Expect = 3.260e-26
Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = 0
Query:    2 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLG-------IVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            G +R+ + SCLYF R   G   ++V VYVDD+ I G  E V E K  +S+RF+M D+G L  V+G ++  DR  G++ +SQ  Y + +L  YG  E R V TP +  +K+S        ++ +   A+ G        VG LM+     RPDIAYAV++ +R ++DP    F   KR+F YL+   + G+ F
Sbjct:  182 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFDV--DRQGGSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQAD-RELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRYLNGTRNYGLLF 368          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A3P3Y0G8_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y0G8_PLABS)

HSP 1 Score: 114 bits (285), Expect = 4.960e-26
Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = 0
Query:    2 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLG-------IVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            G +R+ + SCLYF R   G   ++V VYVDD+ I G  E V E K  +S+RF+M D+G L  V+G ++  DR  G++ +SQ  Y + +L  YG  E R V TP +  +K+S        ++ +   A+ G        VG LM+     RPDIAYAV++ +R ++DP    F   KR+F YL+   + G+ F
Sbjct:  806 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFDV--DRQGGSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQAD-RELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRYLNGTRNYGLLF 992          
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 114 bits (285), Expect = 5.000e-26
Identity = 68/187 (36.36%), Postives = 106/187 (56.68%), Query Frame = 0
Query:    1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 186
            IG  +   D C+Y    EG  T  ++ V+VDDL+I     E + E K  +   F +KDLG   +++GIE++RDR NGTI++SQ  YI  VL R+G    R V TP++  V I    + D  ++P   G    ++G+L+YA+ G RPDI++AV +  +   +P  E ++  KR+  YL+   +L + F
Sbjct: 1047 IGFSKLEADHCVYKRIREGRMT--IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLDPNV-ILKKRTDDLVADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVF 1230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY3.550e-3138.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3F7G4_NOCCA1.620e-2938.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H6XNZ2_9AGAR2.630e-2838.10Uncharacterized protein n=1 Tax=Mycena sanguinolen... [more]
A0A1M2VT18_TRAPU5.800e-2738.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KBT5_LASNI1.430e-2636.96Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A0A2U1MW82_ARTAN1.440e-2636.17Retrovirus-related Pol polyprotein from transposon... [more]
UPI00142E19AD2.690e-2634.41uncharacterized protein LOC103874474 n=1 Tax=Brass... [more]
A0A0G4IXE9_PLABS3.260e-2636.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A3P3Y0G8_PLABS4.960e-2636.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A284QR88_ARMOS5.000e-2636.36Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..105
e-value: 1.9E-18
score: 67.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 24..176
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 24..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34081contigH-paniculata_contig34081:19..645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34081.9107.1mRNA_H-paniculata_contig34081.9107.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig34081 19..645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig34081.9107.1 ID=prot_H-paniculata_contig34081.9107.1|Name=mRNA_H-paniculata_contig34081.9107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNIS
QRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRG
VPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYA
VHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like