mRNA_H-paniculata_contig34081.9107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 128 bits (322), Expect = 3.550e-31 Identity = 74/192 (38.54%), Postives = 114/192 (59.38%), Query Frame = 1
Query: 1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGI-----VGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG 561
+GL RS D C+++ R+E LL+A+ VDD IAG + V FK IS RF+M DLG + +LGIE++RDR T+++SQ YI +L R+ + + + TP++ +S + PS P+ F + I +G+LMYA+ G RPDIAYA+ ++ M++P Q + KR+F YL+ + +TFG
Sbjct: 282 MGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQC---PSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFG 470
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 124 bits (311), Expect = 1.620e-29 Identity = 70/183 (38.25%), Postives = 107/183 (58.47%), Query Frame = 1
Query: 13 RSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
RS DSC+Y + EGG LL+ YVDD++IA + ++D K +S F MKD+G+ SR+LGI+++RDR G + +SQ SY+ +V+KR+ E + V TP+ G K+SA + + + + + VG++MYA G RPDIAYA+ +R M P + K + Y+ DL + F
Sbjct: 1014 RSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKY-PYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKPGIMHWEAVKWLLRYIRGTADLNLVF 1193
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A8H6XNZ2_9AGAR (Uncharacterized protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNZ2_9AGAR) HSP 1 Score: 120 bits (302), Expect = 2.630e-28 Identity = 72/189 (38.10%), Postives = 106/189 (56.08%), Query Frame = 1
Query: 1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSF-GAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG 561
I L ++ D C+Y+ +G T V V+VDDL+I R + + K I F KDLG +++GIE+RRDR +GTIT+SQ Y+ +L +YG + + + TP++ V + AD P P G I+G LMYA+ RPDIAYAV ++ +P E +S CKR+ YLS + G+ +G
Sbjct: 1064 IQLVKTAVDHCVYYREHDGERT--WVTVWVDDLLILSTSRHEAERTKAEIEGLFDTKDLGEPRKIIGIEIRRDRGSGTITLSQLHYVETLLAKYGLTDAKPLATPMDPNVTLRK-VPADAPEAPAELRGQYQSIIGGLMYAAICTRPDIAYAVTTLSQYCSNPGPEHWSACKRVLRYLSGTRNYGLVYG 1249
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 117 bits (292), Expect = 5.800e-27 Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 1
Query: 1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPS------EPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
+G R +++CLY RD+ G+ LV VYVDDL++A R +DE K ++ +F+M+DLG S +LGI +RRDRP I +SQ YI VL RYG + + TP+ VK SA + D + E +S + ++G++MYA G RPDIAY V R +P + + KR YL D+ + F
Sbjct: 1151 LGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSV-SYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRF 1341
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A0J7KBT5_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KBT5_LASNI) HSP 1 Score: 115 bits (289), Expect = 1.430e-26 Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 1
Query: 25 DSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVL----GIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITFG 561
D C+Y R G+ +L+AVYVDD+++ R K++E K N++Q F ++DLG ++ LGIE R+ N TI + Q YIR++L R+G E + V TP++ VK+ KP E GA ++GALMY + RPDIA+A+ ++ + Q ++ KR+ YL DLG+ F
Sbjct: 810 DPCIY--RIGHGDNTILIAVYVDDIILVSRNLNKIEELKKNLAQEFDVRDLGEINYCLGIEFSRN--NDTIALHQSGYIRDILDRFGMTESKPVSTPMDPNVKLV------KPDENSDIGATKIPYRELIGALMYLAVSTRPDIAFAISSLSQFNDCYDQNHWNAAKRVLRYLKGTIDLGLVFS 983
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 115 bits (289), Expect = 1.440e-26 Identity = 68/188 (36.17%), Postives = 107/188 (56.91%), Query Frame = 1
Query: 4 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAG-RREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPE--SADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
G +R D C+Y + G LV +YVDD++IA ++++ E K +S F MKDLG+ ++LG+E+RRDR G +T+SQ YI +VLKR+ + + TP+ K+S+ E +++ E S VG+LMYA RPD+A+AV +R M +P + + K I YL ++G++F
Sbjct: 937 GYDRCSYDECVYLRKFPDGSFLYLV-LYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVKCILRYLKGTSNIGLSF 1123
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD) HSP 1 Score: 115 bits (287), Expect = 2.690e-26 Identity = 64/186 (34.41%), Postives = 110/186 (59.14%), Query Frame = 1
Query: 4 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
G RS +D C+Y ++ G E + + +YVDD+++A +++ ++ + K +S F MKD+G SR+LGI+++RDR T+ + Q YI++VLKR+ E + V TP+ K+++ ++AD+ + + L VG++MYA G RPD+AYA+ +R M P + K + YL DL + +
Sbjct: 1008 GFIRSDSDLCVYI-KEVGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKV-PYLSAVGSVMYAMVGTRPDVAYALGLVSRFMSKPGSIHWEAVKWLLRYLRGSADLNLIY 1191
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A0G4IXE9_PLABS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXE9_PLABS) HSP 1 Score: 114 bits (285), Expect = 3.260e-26 Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = 1
Query: 4 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLG-------IVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
G +R+ + SCLYF R G ++V VYVDD+ I G E V E K +S+RF+M D+G L V+G ++ DR G++ +SQ Y + +L YG E R V TP + +K+S ++ + A+ G VG LM+ RPDIAYAV++ +R ++DP F KR+F YL+ + G+ F
Sbjct: 182 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFDV--DRQGGSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQAD-RELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRYLNGTRNYGLLF 368
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A3P3Y0G8_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y0G8_PLABS) HSP 1 Score: 114 bits (285), Expect = 4.960e-26 Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = 1
Query: 4 GLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLG-------IVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
G +R+ + SCLYF R G ++V VYVDD+ I G E V E K +S+RF+M D+G L V+G ++ DR G++ +SQ Y + +L YG E R V TP + +K+S ++ + A+ G VG LM+ RPDIAYAV++ +R ++DP F KR+F YL+ + G+ F
Sbjct: 806 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFDV--DRQGGSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQAD-RELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRYLNGTRNYGLLF 992
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 114 bits (285), Expect = 5.000e-26 Identity = 68/187 (36.36%), Postives = 106/187 (56.68%), Query Frame = 1
Query: 1 IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIELRRDRPNGTITISQGSYIREVLKRYGFYEFRGVPTPVEGKVKISAPESADKPSEPKSFGAVLGIVGALMYASTGARPDIAYAVHQAARRMEDPCQEDFSTCKRIFHYLSIVPDLGITF 558
IG + D C+Y EG T ++ V+VDDL+I E + E K + F +KDLG +++GIE++RDR NGTI++SQ YI VL R+G R V TP++ V I + D ++P G ++G+L+YA+ G RPDI++AV + + +P E ++ KR+ YL+ +L + F
Sbjct: 1047 IGFSKLEADHCVYKRIREGRMT--IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLDPNV-ILKKRTDDLVADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVF 1230 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34081.9107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34081.9107.1 >prot_H-paniculata_contig34081.9107.1 ID=prot_H-paniculata_contig34081.9107.1|Name=mRNA_H-paniculata_contig34081.9107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISback to top mRNA from alignment at H-paniculata_contig34081:19..645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34081.9107.1 ID=mRNA_H-paniculata_contig34081.9107.1|Name=mRNA_H-paniculata_contig34081.9107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at H-paniculata_contig34081:19..645- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34081:19..645- >mRNA_H-paniculata_contig34081.9107.1 ID=mRNA_H-paniculata_contig34081.9107.1|Name=mRNA_H-paniculata_contig34081.9107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig34081:19..645- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |