prot_H-paniculata_contig3399.9074.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3399.9074.1
Unique Nameprot_H-paniculata_contig3399.9074.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length75
Homology
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-13
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            +F+ KL+ DG++ +YKAR+VA+G++Q EG+ +F T +P AR++T+R + SL A H F +  M V  A LN  +E
Sbjct:  235 VFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELE 308          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 73.2 bits (178), Expect = 2.140e-13
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            +F  K   DGS+ ++KAR+VAQG++QM G  F  T AP A++S++RT+ +L A++D+ELE M V +A+LN  ++
Sbjct: 1013 VFRIKRDADGSITQFKARLVAQGYTQMPGVDFNETFAPVAKLSSIRTILALAARYDWELEQMEVKSAYLNGRLD 1086          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: A0B9Y9_ORYSA (OSIGBa0103O01.9 protein n=1 Tax=Oryza sativa TaxID=4530 RepID=A0B9Y9_ORYSA)

HSP 1 Score: 72.4 bits (176), Expect = 3.940e-13
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            +F+ KL+ DG++ +YKAR+VA+G++Q EG+ FF T +P AR++T+R +F+L A H   +  M V  A LN  +E
Sbjct:  488 VFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLFALEASHGLLVHQMDVKTAFLNGELE 561          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: Q337R3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q337R3_ORYSJ)

HSP 1 Score: 72.4 bits (176), Expect = 3.940e-13
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNA 71
            +F+ KL+ DG++ +YKAR+VA+G++Q EG+ FF T +P AR++T+R + SL A H   +  M V  A LNA
Sbjct:  708 VFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNA 778          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI)

HSP 1 Score: 72.4 bits (176), Expect = 3.940e-13
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLN 70
            + E K+K DGS+ +YKAR+V QGF Q EG  FF T AP AR+ST+R + +L A HD  +  M V  A LN
Sbjct:  494 VLERKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLN 563          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: Q10P45_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10P45_ORYSJ)

HSP 1 Score: 72.4 bits (176), Expect = 3.960e-13
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            +F+ KL+ DG++ +YKAR+VA+G++Q EG+ FF T +P AR+ T+R + +L A HD  +  M V  A LN  +E
Sbjct:  763 VFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLITIRVLLALAASHDLLVHQMDVKTAFLNGELE 836          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: A0A409WYT1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYT1_9AGAR)

HSP 1 Score: 72.4 bits (176), Expect = 3.990e-13
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALV 73
            +F  K    G+V+RYKAR+VAQGFSQ+ G  +F T AP AR++++RTV ++ A  DFE+  + +  A+LN ++
Sbjct: 1112 VFRAKKDAAGNVIRYKARLVAQGFSQVPGVDYFDTFAPVARLASIRTVLAIAAVEDFEIHQIDIKGAYLNGVL 1184          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ)

HSP 1 Score: 72.0 bits (175), Expect = 5.460e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            +F++KL EDGS+VR KAR+VAQGF+Q+EG  F  T AP AR+  +R + +  A   F+L  M V +A LN ++E
Sbjct: 1336 VFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIE 1409          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: Q7XPI7_ORYSJ (OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XPI7_ORYSJ)

HSP 1 Score: 72.0 bits (175), Expect = 5.480e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            +F++KL EDGS+VR KAR+VAQGF+Q+EG  F  T AP AR+  +R + +  A   F+L  M V +A LN ++E
Sbjct: 1311 VFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIE 1384          
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Match: A0A5N6NXZ8_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NXZ8_9ASTR)

HSP 1 Score: 71.2 bits (173), Expect = 9.990e-13
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFSLVAKHDFELEGMGVDAAHLNALVE 74
            IF+ K+K DGS+ +YKAR+V QGF Q EG  FF T AP AR+ST+R + +L A H+  +  M V  A LN  +E
Sbjct:  626 IFKKKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLIIHQMDVKNAFLNGELE 699          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3399.9074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C6JRI2_SORBI1.540e-1344.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060S825_PYCCI2.140e-1345.95CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
A0B9Y9_ORYSA3.940e-1344.59OSIGBa0103O01.9 protein n=1 Tax=Oryza sativa TaxID... [more]
Q337R3_ORYSJ3.940e-1346.48Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A699IEH1_TANCI3.940e-1351.43Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
Q10P45_ORYSJ3.960e-1344.59Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A409WYT1_9AGAR3.990e-1345.21Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
Q5KQE8_ORYSJ5.460e-1348.65Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
Q7XPI7_ORYSJ5.480e-1348.65OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp... [more]
A0A5N6NXZ8_9ASTR9.990e-1350.00Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..73
e-value: 1.4E-13
score: 51.1
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 1..67
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3399contigH-paniculata_contig3399:13693..13917 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3399.9074.1mRNA_H-paniculata_contig3399.9074.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3399 12706..13917 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3399.9074.1 ID=prot_H-paniculata_contig3399.9074.1|Name=mRNA_H-paniculata_contig3399.9074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
IFEHKLKEDGSVVRYKARVVAQGFSQMEGKGFFGTSAPAARMSTLRTVFS
LVAKHDFELEGMGVDAAHLNALVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like