mRNA_H-paniculata_contig33812.9037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33812.9037.1
Unique NamemRNA_H-paniculata_contig33812.9037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: A0A6H5JMZ8_9PHAE (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ8_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.100e-33
Identity = 69/87 (79.31%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RVGQSP SVRML KEGF +VVESGAGA+ASFTD AY++AGATVV+G EAWK+DIVV  +PP+PEEAALVE+RTLISLLFPAQ+G+LV
Sbjct:  125 RVGQSPASVRMLTKEGFGVVVESGAGAAASFTDEAYEEAGATVVKGSEAWKADIVV--DPPSPEEAALVEDRTLISLLFPAQSGDLV 209          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: D8LSE0_ECTSI (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 6.720e-30
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   40 MLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            ML K+GF +VV+SGAGA+ASFTD AY++AGATVV+G EAWK+DIVVKV PPTPEEAALVE RTLISLLFPAQ+G+LV
Sbjct:    1 MLTKDGFGVVVQSGAGAAASFTDEAYEEAGATVVKGSEAWKADIVVKVEPPTPEEAALVEARTLISLLFPAQSGDLV 77          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: A0A7S2GVT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.970e-24
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RVGQSP+S+  LVK GF + VE GAG SA+ +DA Y+  GAT+V+    WKSDI+ K++PPT EEAAL+ENR LIS++ P  N EL+
Sbjct:   97 RVGQSPESIAKLVKAGFSVKVEEGAGTSAAISDALYEAVGATIVDHASVWKSDIITKIHPPTLEEAALLENRMLISMIQPQLNEELM 183          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: A0A7S0E4I4_9EUKA (Proton-translocating NAD(P)(+) transhydrogenase (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E4I4_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 8.070e-24
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RV QSPDSV +LVK  F++VVE GAGA+A F+D  Y++ GAT+V   EAWKSDI++K+NPP+  EA LV +RTLIS + P+ N  L+
Sbjct:   88 RVAQSPDSVALLVKANFKVVVEKGAGAAAEFSDDQYEEVGATIVSSAEAWKSDIIIKINPPSSGEAKLVGDRTLISQINPSNNAALL 174          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: A0A7S3STK5_EMIHU (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3STK5_EMIHU)

HSP 1 Score: 101 bits (251), Expect = 5.220e-23
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RVGQ+P+SV  LVKEG  + VE+GAGA+A F+DAAY+ AGA+VV   EAW + +V KV PPT EEA LV +R L+S +FPAQN  LV
Sbjct:   51 RVGQTPESVAKLVKEGITVKVEAGAGAAADFSDAAYEKAGASVVSRDEAWGASLVTKVMPPTEEEAKLVGDRMLLSFVFPAQNDALV 137          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: A0A7S2LQP6_9STRA (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQP6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.810e-22
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWK-SDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RV  +P+SV  LVK GF +++E GAG+S+ F+DA Y  AGA +VE  E WK SDIV+K+ PPT EEA+ +E+RTLIS ++PAQN ELV
Sbjct:   66 RVAATPESVSKLVKPGFNVLIEKGAGSSSHFSDAEYASAGAKIVEAEEVWKNSDIVMKLRPPTTEEASKLEDRTLISFIYPAQNKELV 153          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: F0YIC9_AURAN (Proton-translocating NAD(P)(+) transhydrogenase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIC9_AURAN)

HSP 1 Score: 99.4 bits (246), Expect = 2.470e-22
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    7 NRVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            NRV Q+P+S+  L+K GF +VVE+GAGA+A F DA Y  AGA VV+  +AW +DIV KVNPPT +EAA + +RTL+S++ PAQNG+LV
Sbjct:   17 NRVAQTPESLAALLKAGFSVVVEAGAGAAAGFADADYAAAGAAVVD--DAWAADIVTKVNPPTLDEAAKLGDRTLLSMVQPAQNGDLV 102          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: A0A7S0LNL4_9EUKA (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LNL4_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 3.380e-22
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RV Q+P+SV  LVKEGF ++VE GAGASA F D+ Y+DAGA +V   EA+K+ ++ KV  PT EE  L+ENR L+S LFPAQN  L+
Sbjct:   53 RVSQTPESVSKLVKEGFSVLVERGAGASADFGDSMYEDAGAKLVSREEAYKASLITKVTVPTSEEVKLIENRMLLSFLFPAQNAPLL 139          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: R1C2S3_EMIHU (Proton-translocating NAD(P)(+) transhydrogenase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C2S3_EMIHU)

HSP 1 Score: 97.8 bits (242), Expect = 8.590e-22
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RV QSP+SV +LVK+GFR+VVE GAGA + F D AY +AGATV    EAW +  V K+NPPT EEA LV +RTL++ + P++N ELV
Sbjct:   54 RVAQSPESVALLVKKGFRVVVEQGAGADSLFGDDAYVEAGATVASREEAWGAHFVTKINPPTREEAKLVGDRTLLAQINPSKNTELV 140          
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Match: B8C9R3_THAPS (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9R3_THAPS)

HSP 1 Score: 96.3 bits (238), Expect = 2.980e-21
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   10 RVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGVEAWK-SDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV 270
            RV  +P+SV  LVK GF +++E GAG+S+ F+DA Y+ AGA +VE  + WK SDIV+K+ PPT EE   ++NRT+IS L+PAQN EL+
Sbjct:   74 RVAATPESVSKLVKPGFNVLIEKGAGSSSYFSDADYESAGAKIVEADQVWKESDIVMKLRPPTKEELTQLDNRTIISFLYPAQNPELL 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33812.9037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMZ8_9PHAE2.100e-3379.31Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
D8LSE0_ECTSI6.720e-3079.22Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S2GVT9_9STRA1.970e-2457.47Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0E4I4_9EUKA8.070e-2457.47Proton-translocating NAD(P)(+) transhydrogenase (F... [more]
A0A7S3STK5_EMIHU5.220e-2360.92Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S2LQP6_9STRA1.810e-2257.95Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
F0YIC9_AURAN2.470e-2259.09Proton-translocating NAD(P)(+) transhydrogenase (F... [more]
A0A7S0LNL4_9EUKA3.380e-2257.47Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
R1C2S3_EMIHU8.590e-2258.62Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
B8C9R3_THAPS2.980e-2154.55Proton-translocating NAD(P)(+) transhydrogenase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33812contigH-paniculata_contig33812:481..1374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D8LSE0
KEGG rclassRC00001
KEGG koko:K00323
KEGG ReactionR00112
KEGG Pathwayko00760,ko01100,map00760,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transhydrogenase
EggNOG OGs2QQ0A@2759,COG1282@1
EC1.6.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.6811013-CDS-H-paniculata_contig33812:480..5701622930042.6811013-CDS-H-paniculata_contig33812:480..570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33812 481..570 -
1691481123.0599554-CDS-H-paniculata_contig33812:480..5701691481123.0599554-CDS-H-paniculata_contig33812:480..570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33812 481..570 -
1622930042.6948855-CDS-H-paniculata_contig33812:1194..13741622930042.6948855-CDS-H-paniculata_contig33812:1194..1374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33812 1195..1374 -
1691481123.0726852-CDS-H-paniculata_contig33812:1194..13741691481123.0726852-CDS-H-paniculata_contig33812:1194..1374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33812 1195..1374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33812.9037.1prot_H-paniculata_contig33812.9037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33812 481..1374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33812.9037.1

>prot_H-paniculata_contig33812.9037.1 ID=prot_H-paniculata_contig33812.9037.1|Name=mRNA_H-paniculata_contig33812.9037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
NLNRVGQSPDSVRMLVKEGFRIVVESGAGASASFTDAAYDDAGATVVEGV
EAWKSDIVVKVNPPTPEEAALVENRTLISLLFPAQNGELV
back to top

mRNA from alignment at H-paniculata_contig33812:481..1374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33812.9037.1 ID=mRNA_H-paniculata_contig33812.9037.1|Name=mRNA_H-paniculata_contig33812.9037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at H-paniculata_contig33812:481..1374- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTGAATAGAGTCGGACAGAGCCCGGATTCCGTGCGCATGCTGGTCAA GGAAGGCTTTCGAATCGTGGTAGAATCTGGAGCGGGTGCTAGCGCCAGTT TCACGGACGCCGCGTACGACGACGCGGGAGCGACGGTGGTTGAGGGAGTC GAAGCTTGGAAATCAGACATTGTGGTCAAGGTATGGTTGTGTAGGTGTCA TTCATTCTTCGGTGTGTATGTGTGTGTCTGTGTGTGTCTGTGTGTGTATA TAGGTGTTATTCTTCTTCAAGCCATTGAAAATGATATATCGTGGTGAAGG TATATATACGACAGTATGCATGTAAGTAACGCACACTTGTAATATTTTCC GTGTGTGGGTGTGTGCGTGCATTTCAAACCTTTTTTAATCAGATAGTGTG GTCAAGGCACAGACTTAATGTAGGTGATGGCGAGTTCAATTTGGCAGCTC GGTTTTTCCGAGAGTCGTTCGACTTGTATTGAGCTAGCGACGAACCGGAA ACTCCATTGTGGAGATCCTGCGTCGTGTAGGGCTTGTCTGCAGGCGCTTG CTTCATTTGATTTGAAGGGTTATGCCAAGGAAGTACTACTGTATGGCGCC CAGGAAGCACCACTTTTGGTGTAGCTGGGTATATATCTCCGAGTCTAGAT GGTGATATTTCATGTTTTCCCTGTGTGTATGTTTTCCTGCTTGTTGCCCT TCATTTCCGGCGTGTTGATACCTCGTGATGCATCCATCAATGCAGTCAGT CCCTGGCTTGCTCAAATCCTTCCAAAATAACACGGTGTTGTGGAACGCCA ACAGGTGAACCCCCCTACCCCGGAAGAGGCCGCTCTCGTGGAAAATCGTA CCCTCATCAGCCTGCTGTTCCCCGCTCAAAACGGCGAGCTGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig33812:481..1374-

>mRNA_H-paniculata_contig33812.9037.1 ID=mRNA_H-paniculata_contig33812.9037.1|Name=mRNA_H-paniculata_contig33812.9037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig33812:481..1374- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTGAATAGAGTCGGACAGAGCCCGGATTCCGTGCGCATGCTGGTCAA
GGAAGGCTTTCGAATCGTGGTAGAATCTGGAGCGGGTGCTAGCGCCAGTT
TCACGGACGCCGCGTACGACGACGCGGGAGCGACGGTGGTTGAGGGAGTC
GAAGCTTGGAAATCAGACATTGTGGTCAAGAATCTGAATAGAGTCGGACA
GAGCCCGGATTCCGTGCGCATGCTGGTCAAGGAAGGCTTTCGAATCGTGG
TAGAATCTGGAGCGGGTGCTAGCGCCAGTTTCACGGACGCCGCGTACGAC
GACGCGGGAGCGACGGTGGTTGAGGGAGTCGAAGCTTGGAAATCAGACAT
TGTGGTCAAGGTGAACCCCCCTACCCCGGAAGAGGCCGCTCTCGTGGAAA
ATCGTACCCTCATCAGCCTGCTGTTCCCCGCTCAAAACGGCGAGCTGGTG
GTGAACCCCCCTACCCCGGAAGAGGCCGCTCTCGTGGAAAATCGTACCCT
CATCAGCCTGCTGTTCCCCGCTCAAAACGGCGAGCTGGTG
back to top