mRNA_H-paniculata_contig33798.9035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: UPI001E1BC9B8 (uncharacterized protein LOC116934501 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC9B8) HSP 1 Score: 67.8 bits (164), Expect = 3.740e-11 Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
AGD +++STSGS+ FL+DG + ++S Q TTA STTEAE IA+ K ++L +L +L K+ RNV ++CDN+
Sbjct: 1202 FAGDIDDSKSTSGSIMFLNDGPVAWSSKKQPTTALSTTEAEYIAVCQGGKTAVWLGYLLEDLLGKDIRNVPMYCDNE 1278
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH) HSP 1 Score: 67.8 bits (164), Expect = 3.740e-11 Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 58 AGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
AG ++ +STSG ++ + G + SS QKT AQST EAE IA+ + A Q I+L ++ E+G K + +RIFCDNK
Sbjct: 1202 AGSVEDKKSTSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNK 1277
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A1J3G9F4_NOCCA (Copia protein n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G9F4_NOCCA) HSP 1 Score: 64.3 bits (155), Expect = 5.070e-10 Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 61 GDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
G ++ +STSG ++ + + SS QKT AQST EAE IA+ + A Q I+L ++ E+G K + VRIFCDNK
Sbjct: 201 GSVEDKKSTSGYVFTIGSSAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGVRIFCDNK 275
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 8.980e-10 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
+P N RST+G ++FL G+I + + Q AQ+T EAEL A+S A++ +Y+S + E+G K FR+V I D+
Sbjct: 36 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 111
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 2.860e-9 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
+P N RST+G ++FL G+I + + Q AQ+T EAEL A+S A++ +Y+S + E+G K FR+V I D+
Sbjct: 151 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 226
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.900e-9 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
+P N RST+G ++FL G+I + + Q AQ+T EAEL A+S A++ +Y+S + E+G K FR+V I D+
Sbjct: 588 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 663
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.940e-9 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
+P N RST+G ++FL G+I + + Q AQ+T EAEL A+S A++ +Y+S + E+G K FR+V I D+
Sbjct: 747 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 822
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 4.020e-9 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
+P N RST+G ++FL G+I + + Q AQ+T EAEL A+S A++ +Y+S + E+G K FR+V I D+
Sbjct: 1367 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 1442
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 5.240e-9 Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
+P N RST+G M+FL G+I + + Q AQ+T EAEL A+ A++ +Y+S + E+G K FR+V I D+
Sbjct: 448 FGANPDNGRSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDS 523
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6D2LD64_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LD64_9BRAS) HSP 1 Score: 61.2 bits (147), Expect = 5.900e-9 Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 61 GDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
G ++ +STSG ++ L G+ + S+ Q+T AQST EAE IA+ Q I+L +L ELG K+ V I+CDNK
Sbjct: 130 GSVEDKKSTSGYVFTLGSGMFSWQSNKQQTVAQSTAEAEYIAVCAATNQAIWLQRLLEELGFKSQHGVPIYCDNK 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33798.9035.1 >prot_H-paniculata_contig33798.9035.1 ID=prot_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKback to top mRNA from alignment at H-paniculata_contig33798:228..512+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33798.9035.1 ID=mRNA_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig33798:228..512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33798:228..512+ >mRNA_H-paniculata_contig33798.9035.1 ID=mRNA_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig33798:228..512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |