mRNA_H-paniculata_contig33798.9035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33798.9035.1
Unique NamemRNA_H-paniculata_contig33798.9035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: UPI001E1BC9B8 (uncharacterized protein LOC116934501 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC9B8)

HSP 1 Score: 67.8 bits (164), Expect = 3.740e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
             AGD  +++STSGS+ FL+DG + ++S  Q TTA STTEAE IA+    K  ++L  +L +L  K+ RNV ++CDN+
Sbjct: 1202 FAGDIDDSKSTSGSIMFLNDGPVAWSSKKQPTTALSTTEAEYIAVCQGGKTAVWLGYLLEDLLGKDIRNVPMYCDNE 1278          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH)

HSP 1 Score: 67.8 bits (164), Expect = 3.740e-11
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   58 AGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
            AG  ++ +STSG ++ +  G   + SS QKT AQST EAE IA+ + A Q I+L  ++ E+G K  + +RIFCDNK
Sbjct: 1202 AGSVEDKKSTSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNK 1277          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A1J3G9F4_NOCCA (Copia protein n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G9F4_NOCCA)

HSP 1 Score: 64.3 bits (155), Expect = 5.070e-10
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   61 GDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
            G  ++ +STSG ++ +      + SS QKT AQST EAE IA+ + A Q I+L  ++ E+G K  + VRIFCDNK
Sbjct:  201 GSVEDKKSTSGYVFTIGSSAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGVRIFCDNK 275          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 8.980e-10
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
               +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:   36 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 111          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.860e-9
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
               +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  151 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 226          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.900e-9
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
               +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  588 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 663          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.940e-9
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
               +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  747 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 822          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.020e-9
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
               +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct: 1367 FGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 1442          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.240e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   55 MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 282
               +P N RST+G M+FL  G+I + +  Q   AQ+T EAEL A+   A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  448 FGANPDNGRSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDS 523          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6D2LD64_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LD64_9BRAS)

HSP 1 Score: 61.2 bits (147), Expect = 5.900e-9
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   61 GDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 285
            G  ++ +STSG ++ L  G+  + S+ Q+T AQST EAE IA+     Q I+L  +L ELG K+   V I+CDNK
Sbjct:  130 GSVEDKKSTSGYVFTLGSGMFSWQSNKQQTVAQSTAEAEYIAVCAATNQAIWLQRLLEELGFKSQHGVPIYCDNK 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BC9B83.740e-1146.75uncharacterized protein LOC116934501 n=1 Tax=Daphn... [more]
Q9LH44_ARATH3.740e-1146.05Copia-like retrotransposable element n=1 Tax=Arabi... [more]
A0A1J3G9F4_NOCCA5.070e-1045.33Copia protein n=1 Tax=Noccaea caerulescens TaxID=1... [more]
A0A6H5K4K1_9PHAE8.980e-1040.79Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC04_9PHAE2.860e-940.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE3.900e-940.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE3.940e-940.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHG5_9PHAE4.020e-940.79Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KY35_9PHAE5.240e-940.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6D2LD64_9BRAS5.900e-944.00Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33798contigH-paniculata_contig33798:228..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size287
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.3089986-UTR-H-paniculata_contig33798:227..2811622930042.3089986-UTR-H-paniculata_contig33798:227..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33798 228..281 +
1691481122.8454878-UTR-H-paniculata_contig33798:227..2811691481122.8454878-UTR-H-paniculata_contig33798:227..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33798 228..281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.3267903-CDS-H-paniculata_contig33798:281..5121622930042.3267903-CDS-H-paniculata_contig33798:281..512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33798 282..512 +
1691481122.8630238-CDS-H-paniculata_contig33798:281..5121691481122.8630238-CDS-H-paniculata_contig33798:281..512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33798 282..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33798.9035.1prot_H-paniculata_contig33798.9035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33798 282..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33798.9035.1

>prot_H-paniculata_contig33798.9035.1 ID=prot_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAK
QGIYLSGILGELGSKNFRNVRIFCDNK
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mRNA from alignment at H-paniculata_contig33798:228..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33798.9035.1 ID=mRNA_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig33798:228..512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCTACAGTCGTGACTCCAACTTCGAGCTAACCAGCTTCTGCGACGCC TCCTATGGCTGGCGACCCCCAAAACGCTAGGTCAACCTCAGGGAGCATGT ACTTTCTCTCCGATGGAGTTATTCATTTTACTTCGAGCCTTCAGAAAACT ACGGCTCAGTCAACCACGGAGGCGGAACTAATCGCCATGAGCACCTGCGC TAAACAAGGAATTTACCTCTCTGGCATCCTTGGAGAGCTTGGATCGAAGA ACTTCCGTAACGTCCGCATCTTCTGCGACAACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33798:228..512+

>mRNA_H-paniculata_contig33798.9035.1 ID=mRNA_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig33798:228..512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGCGACCCCCAAAACGCTAGGTCAACCTCAGGGAGCATGTACTT
TCTCTCCGATGGAGTTATTCATTTTACTTCGAGCCTTCAGAAAACTACGG
CTCAGTCAACCACGGAGGCGGAACTAATCGCCATGAGCACCTGCGCTAAA
CAAGGAATTTACCTCTCTGGCATCCTTGGAGAGCTTGGATCGAAGAACTT
CCGTAACGTCCGCATCTTCTGCGACAACAAGATGGCTGGCGACCCCCAAA
ACGCTAGGTCAACCTCAGGGAGCATGTACTTTCTCTCCGATGGAGTTATT
CATTTTACTTCGAGCCTTCAGAAAACTACGGCTCAGTCAACCACGGAGGC
GGAACTAATCGCCATGAGCACCTGCGCTAAACAAGGAATTTACCTCTCTG
GCATCCTTGGAGAGCTTGGATCGAAGAACTTCCGTAACGTCCGCATCTTC
TGCGACAACAAG
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