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Homology
BLAST of mRNA_H-paniculata_contig1140.903.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 1.480e-6 Identity = 80/235 (34.04%), Postives = 95/235 (40.43%), Query Frame = 1
Query: 25 SHDKSRENIGHPNSSTDSFKEDIQAIGRRVERLREGFAGGASSDASSKSKEQSPSGHDSLPWSRALSSSSLASEA--RFNRRSEPQVYAGVP------QPL-REWSAGRQRDANFAEEPLVERSTALRTSQSQGLLSLNELRSESGVVRPHIPTGEYQSRGDRVAVGPSRDDGRNPIPSATSQTAGGGRTIPWSINVSSL-GAGRWGGAAG*GCAIVAHIDEK*GNKPEARSSIG 699
S D + G + DSFK+DIQAIGR VERLR+GFAG SS S +P GHDS W LSSS LAS R S G P +PL RE R + E + S RT S G LSL ELRS + R H + R D D G + + GGG VS G GG++G + N SS G
Sbjct: 10 SSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTDSS-----SPAPAP-GHDSAQWDGGLSSSMLASGPGDESGRPSSGDGVGGQPTLGNNSRPLVRELLPARAGVSGIFAEG--DTSVLERTRYSDGRLSLRELRS-ADKSRTHYSDERARPRPD--------DAGDQSTTAVAAAAEGGGEMAGTGTQVSDQEGLFNKGGSSG--STHSGSTSRRRANDVGGPSSPG 225
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1099 |
| Cds size | 630 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1140.903.1 >prot_H-paniculata_contig1140.903.1 ID=prot_H-paniculata_contig1140.903.1|Name=mRNA_H-paniculata_contig1140.903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MAADGRSVSHDKSRENIGHPNSSTDSFKEDIQAIGRRVERLREGFAGGAS
SDASSKSKEQSPSGHDSLPWSRALSSSSLASEARFNRRSEPQVYAGVPQP
LREWSAGRQRDANFAEEPLVERSTALRTSQSQGLLSLNELRSESGVVRPH
IPTGEYQSRGDRVAVGPSRDDGRNPIPSATSQTAGGGRTIPWSINVSSLG
AGRWGGAAG* back to topmRNA from alignment at H-paniculata_contig1140:21274..23704- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1140.903.1 ID=mRNA_H-paniculata_contig1140.903.1|Name=mRNA_H-paniculata_contig1140.903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-paniculata_contig1140:21274..23704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCAGACGGCCGCTCCGTCTCTCACGATAAATCAAGGGAAAATAT
TGGCCACCCTAACTCCTCAACGGATAGCTTCAAGGAGGATATACAGGTCA
GTCCGGATATGTGTTGTTGTCTATGTGCAGAAAAGGCTCGTCAAAAACGT
GAACCTGAAAAAATGGCGCGGATTGCTCAAACTCAACTACAGGGTGTTCG
AGGGTTCAGTTCTCAACAAACCCTCTACGATTGGCATAAGCCAAACATGG
ATCACGTATCATAGTATCTACCGGGCCTGGGATTCTGTTCAAAAATATCC
TACGTCAAGTATTCTATGACTTGGGTTCTCTCGATGACACGCCCTTGTTG
TTGTCGCTGTCGGTGTCCGTTTGTTTTTTATGACCCCGATCGTGTCTCAT
CTTGTCCCACGCTCTACCGTGTCAAATCACGGTATACCAACACAACCCAG
GCGATAGGAAGGAGAGTTGAACGGCTTAGAGAGGGGTTCGCGGGAGGGGC
CTCCTCCGACGCCTCGTCAAAGTCGAAAGAACAGGTACTCCAAATCATAC
GCTGGAGTTACATTAGCCACCGGGCGTTGTGTTATCCCCAGAAAAAATGG
CTATCGTGAGCAATTGATGAGAGAAAGTTTGTTTGTACGAACAAACCAGC
GGAAAGGCTCGTGAAGCGAAGATGCCCTCTTGACTATTTTCGCCAACACC
AATCCTCGTCAGATCGCTTGGCTTGAACCTCGGTCGATCAACTCCCATCC
GCTCCTCTCCCGCAGTCACCATCGGGCCACGACTCTTTGCCTTGGAGCCG
TGCGCTGTCGTCGTCTAGTCTGGCATCCGAGGCGAGATTCAATCGCCGTA
GCGAGCCCCAAGTTTATGCTGGTGTGCCGCAGCCTTTGAGGTGTGAATTC
CCTACTTCTTACTGGTCAAGCCTTGGTTGAACTGACTAATTGACTGTTAT
TCAGAAGAGACGAAGTTGGAGAAAGCCGACAAAGCCTTGAACGTTGAGAT
CTGAGGTCGAATGCTTTCCTAACCGTTGACAGACTGCAATATATCATGCA
TTTTCTAATAGTACACCACATGTCTTTCATAGTACAACACTAGGGACAAG
GGCAATGCTATCCGTTCTTCACCATCATCGTGCGCACAGAATTGCGACTT
CACCTGGCTGAAGAAAACACCTCCTCTTTACTTACTGTCTAAGTTTGGTA
TTATATCATCACTTTAACACGTCGCTTTGACGTTGGTAATGCATGCGTTA
CTCCTCTACCCGATGGTTATCAGGGAATGGTCGGCCGGACGACAGCGGGA
TGCTAACTTTGCGGAAGAGCCATTGGTTGAGCGATCAACAGCGTTAAGGG
TGGGTGATACACTGATTGGTCAAATGTCTGTCACCATCTTTTGGCTGATT
TGTGAATATGGTGGCAACGTGAGGGTGCCTCTCTCTCCAGACCCAATCCA
GGGGCTGCAGTACGTTACATTTTGCCGAATGAAAAAACGGAATGGCAACA
GTTTTCCATGCGTAACGACGAACAAAACTCCACCCCCTTTTTTTTGTCAA
TCTTCGCGGTTGCTGCTGCTCCGCATGGAGATTTGTTCTTTTCCTCTCTC
AACAATTCATTTTGATGATTGCTGCGCCTCCTCCTCGCTGTGCTTCGCCA
CATTGCCCCCGTGCGTACCTACCCTCATCGTGTACAGACGAGCCAATCAC
AAGGACTCCTGTCGTTGAACGAACTACGCTCGGAGAGTGGAGTCGTCCGC
CCTCATATCCCGACGGGAGAATATCAATCGCGTGGAGATAGGGTTGCGGT
CGGACCCAGTAGGGACGACGGCCGCAATCCAATACCTTCTGCTACATCCC
AGACTGCAGGTGGAGGAAGGACTATCCCTTGGTCGATCAACGTGAGTTCG
CTCGGAGCTGAGGGGACTGAAGCGCAACCTCCGCCGGGAGGTGGGGGGGG
GCTGCAGGGTGAGGCTGCGCGATTGTGGCCCACATTGACGAGAAGTGAGG
AAACAAACCGGAGGCGAGGAGCAGTATTGGAAGGTGGTGATGGTGGGTCC
GATGGTACCAATAGTAGCTCTGGTTCGCGGAAGCGCCATTCGAGAAGGAG
AGAAGAAGAAAAGACGCGCGGAAGTAGCAGGATTGGAACGGACAAAGCGG
AGAGTGATTCTCTGTTAGAGCTACGACACGCGCTGCGAGCGAGGGAGGAC
GAGCTTTTGCAGTTGAAGCGAGATGTAGCCGCTGCGGCGAGCACTTCCGG
GGGTTTTCCACGACTCTCTGCGTCCATCACTGGTGGCAATGATCTGAATG
GGACGTCTACAGGAGAGCCCAGCGTAGCAAGGCTGGGCCTGAGCGTAGGT
AGCAATCGCGGCGGTAACGGCGACAGTCAACCGCCCACGTATTCTACTAC
TTCTTCATCGTTGTTAAATGGCACGTCCCAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig1140:21274..23704- >mRNA_H-paniculata_contig1140.903.1 ID=mRNA_H-paniculata_contig1140.903.1|Name=mRNA_H-paniculata_contig1140.903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig1140:21274..23704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCAGACGGCCGCTCCGTCTCTCACGATAAATCAAGGGAAAATAT
TGGCCACCCTAACTCCTCAACGGATAGCTTCAAGGAGGATATACAGATGG
CGGCAGACGGCCGCTCCGTCTCTCACGATAAATCAAGGGAAAATATTGGC
CACCCTAACTCCTCAACGGATAGCTTCAAGGAGGATATACAGGCGATAGG
AAGGAGAGTTGAACGGCTTAGAGAGGGGTTCGCGGGAGGGGCCTCCTCCG
ACGCCTCGTCAAAGTCGAAAGAACAGGCGATAGGAAGGAGAGTTGAACGG
CTTAGAGAGGGGTTCGCGGGAGGGGCCTCCTCCGACGCCTCGTCAAAGTC
GAAAGAACAGTCACCATCGGGCCACGACTCTTTGCCTTGGAGCCGTGCGC
TGTCGTCGTCTAGTCTGGCATCCGAGGCGAGATTCAATCGCCGTAGCGAG
CCCCAAGTTTATGCTGGTGTGCCGCAGCCTTTGAGTCACCATCGGGCCAC
GACTCTTTGCCTTGGAGCCGTGCGCTGTCGTCGTCTAGTCTGGCATCCGA
GGCGAGATTCAATCGCCGTAGCGAGCCCCAAGTTTATGCTGGTGTGCCGC
AGCCTTTGAGGGAATGGTCGGCCGGACGACAGCGGGATGCTAACTTTGCG
GAAGAGCCATTGGTTGAGCGATCAACAGCGTTAAGGGGAATGGTCGGCCG
GACGACAGCGGGATGCTAACTTTGCGGAAGAGCCATTGGTTGAGCGATCA
ACAGCGTTAAGGACGAGCCAATCACAAGGACTCCTGTCGTTGAACGAACT
ACGCTCGGAGAGTGGAGTCGTCCGCCCTCATATCCCGACGGGAGAATATC
AATCGCGTGGAGATAGGGTTGCGGTCGGACCCAGTAGGGACGACGGCCGC
AATCCAATACCTTCTGCTACATCCCAGACTGCAGGTGGAGGAAGGACTAT
CCCTTGGTCGATCAACGTGAGTTCGCTCGGAGCACGAGCCAATCACAAGG
ACTCCTGTCGTTGAACGAACTACGCTCGGAGAGTGGAGTCGTCCGCCCTC
ATATCCCGACGGGAGAATATCAATCGCGTGGAGATAGGGTTGCGGTCGGA
CCCAGTAGGGACGACGGCCGCAATCCAATACCTTCTGCTACATCCCAGAC
TGCAGGTGGAGGAAGGACTATCCCTTGGTCGATCAACGTGAGTTCGCTCG
GAGCCGGGAGGTGGGGGGGGGCTGCAGGGTGACGGGAGGTGGGGGGGGGC
TGCAGGGTGA back to top
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