prot_H-paniculata_contig1140.903.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1140.903.1
Unique Nameprot_H-paniculata_contig1140.903.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length210
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1140.903.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.040e-7
Identity = 61/143 (42.66%), Postives = 69/143 (48.25%), Query Frame = 0 
Query:    9 SHDKSRENIGHPNSSTDSFKEDIQAIGRRVERLREGFAGGASSDASSKSKEQSPSGHDSLPWSRALSSSSLASEA--RFNRRSEPQVYAGVP------QPL-REWSAGRQRDANFAEEPLVERSTALRTSQSQGLLSLNELRS 142
            S D +    G  +   DSFK+DIQAIGR VERLR+GFAG  SS     S   +P GHDS  W   LSSS LAS       R S      G P      +PL RE    R   +    E   + S   RT  S G LSL ELRS
Sbjct:   10 SSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTDSS-----SPAPAP-GHDSAQWDGGLSSSMLASGPGDESGRPSSGDGVGGQPTLGNNSRPLVRELLPARAGVSGIFAEG--DTSVLERTRYSDGRLSLRELRS 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1140.903.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI3.040e-742.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1140contigH-paniculata_contig1140:21743..23704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1140.903.1mRNA_H-paniculata_contig1140.903.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1140 21274..23704 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1140.903.1 ID=prot_H-paniculata_contig1140.903.1|Name=mRNA_H-paniculata_contig1140.903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MAADGRSVSHDKSRENIGHPNSSTDSFKEDIQAIGRRVERLREGFAGGAS
SDASSKSKEQSPSGHDSLPWSRALSSSSLASEARFNRRSEPQVYAGVPQP
LREWSAGRQRDANFAEEPLVERSTALRTSQSQGLLSLNELRSESGVVRPH
IPTGEYQSRGDRVAVGPSRDDGRNPIPSATSQTAGGGRTIPWSINVSSLG
AGRWGGAAG*
back to top