prot_H-paniculata_contig3318.8900.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3318.8900.1
Unique Nameprot_H-paniculata_contig3318.8900.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length616
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3318.8900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 474..485
score: 51.39
coord: 356..366
score: 35.23
coord: 528..538
score: 54.55
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 229..290
e-value: 14.0
score: 4.3
coord: 156..203
e-value: 2.3E-4
score: 30.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 94..207
e-value: 1.9E-6
score: 29.8
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 157..202
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 143..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3318contigH-paniculata_contig3318:13628..15475 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3318.8900.1mRNA_H-paniculata_contig3318.8900.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3318 11728..15475 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3318.8900.1 ID=prot_H-paniculata_contig3318.8900.1|Name=mRNA_H-paniculata_contig3318.8900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=616bp
MVMGDLVKAAMDLAVPETSFAAAAGAIRGENENNAGGVSAAAAASNGNEG
GRTWLNNSMDDDSSASDGEDAAQAAMHLTTLNRAPAAAALAAMEEDETFS
SHHTRARLSHTPGRRNDESYHQESDEDRADSPPSRSISIGQGADQGDGLF
TPPARHCDACKVGPKRTTVCCRKCYGEYHPGCVGFNPAGRLYPPPQWICP
HCDGGTRGMGKLHAYFQGKGTQVHGDQPWCPICFKDNRRELSKAEAKGGR
KWRACPGAAHCPGCNLITHPACVARLPRNSDGTWPCPECKLRQINRSIHS
TVRRGGCCGASPGSPGGAAESLSGTGGGGGGGNDPVEGAESRVSRVDEVQ
ITPPKKVEMGEPSKRESLSPQTLSPNTLLGTGVVGGGGGGGAGLGSAKSR
SISTPPPSFKKRLAAKARAGAISVSENTAIGSVGSAIMTDVGKSGSDART
TMVTANSNDSVPIVQQQHFVPLVEPKRGRGRPTLQASAAYRAYLESLRMS
PTPRGTMGKAVGNRLPARVVHPDQGEAPTKRGRGRPRRDSYPLDPPPISS
TKSSARARLSSGGGGGGGGGSTASRPSYSSFGNASSAKVAGLLAAASVIT
SSGRIPHRKGAAAAAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD